Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013993

Physical Location & Seq

Genomic Coordinates Reverse (-)

13845507 .. 13846492

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGATTCAATGTAGTTGTGGCAGTTAAGAAGCTATGGAGGCCAAGGACAGACATTGAAAATGGGGAGGACCTATTTGCTGAAGTGAATCTCCTAGGCAGGCTCCGACATAGGAACATTGTGCGGTTATTAGGATACCTCCACAATGAAACTGATGTCATTATGGTATACGAGTACATGCCAAATGGGAACTTAGGTACTGCATTACATGGAGATCAATCAGGAAAATTGCTGGTTGATTGGGTTTCAAGGTACAACATAGCAGTTGAGGTAGCACAAGGTCTAAATTATCTTCACCATGACTGTCAGCCACCAGTCACTCACCGAGATATCAAATCAAACAACATTCTGCTCGATAAGAATCTTGACGCCAGAATAGCAGATTTCGGGTTGGCAAGGATGATGATGCACAAGAATGAGACAGTTTCAATGGTGGCAGGGTCTTATGGATACATTGCACTTGAATATGGATGTGCCATGAAGGTTGATGAAAAGATTGATATCTATAGCTATGGTGTAGTTCTTTTAGAGCTTCTAACTGGAAAAATGCCGGTAGACCCTGCTTTCGAGGAATCTGTGGATGTTGTGGAGTTTGTTCGAAAGAAGATGAGAAACAAAAGAGCTTTAGAAGAAGCACTAGACTCCAGCATAGCCAGAGGGTGCAAGCATGTCCAGGAAGAAATGCTTCTTGTTCTCAGAATCGCGCTACTTTGTACGTCAAAGCTACTGAAAGACAGACCATCAATGAGAGATATAATCACAATGCTGGGAGAGGCAAAGCCAAGGAGGAAAAGCATTTCTGAGAATTGGGACAAAAAGACTCTAAAGGAGAAGCCGATCTTTAGCACCTCACCAGTTATAGGACTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

291

Amino Acids

33.04

Weight (kDa)

8.53

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 229	6.6e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 255	2.3e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08590
fragaria_vesca	FvH4_6g01540 FvH4_6g20240
malus_domestica	MD00G1149400.v1.1 MD04G1232500.v1.1
prunus_persica	Prupe.6G352100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449301
rosa_laevigata	RLG00000025841
rosa_multiflora	Rmu_sc0007719.1_g000004 Rmu_sc0018234.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427300
rosa_rugosa	Rorug02G0619500
rosa_samantha	Rh3AG017500 Rh3BG017600 Rh3CG016600 Rh3DG017900
rosa_wichuraiana	Rw3G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	168, 555
AccII	CGCG	1 cut(s)	704
AciI	CCGC	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	4 cut(s)	176, 199, 254, 715
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	5 cut(s)	10, 59, 249, 429, 464
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	5 cut(s)	34, 510, 532, 623, 724
AluI	AGCT	5 cut(s)	34, 510, 532, 623, 724
Alw26I	GTCTC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
Asp700I	GAANNNNTTC	1 cut(s)	684
AspA2I	CCTAGG	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	287, 314, 843
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	94
BccI	CCATC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	674
BciVI	GTATCC	2 cut(s)	128, 443
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	95, 638, 871
BfmI	CTRYAG	1 cut(s)	505
BfuI	GTATCC	2 cut(s)	128, 443
BlnI	CCTAGG	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	598
BsaBI	GATNNNNATC	2 cut(s)	360, 500
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	44, 94, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	3 cut(s)	314, 544, 854
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	2 cut(s)	360, 500
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	3 cut(s)	44, 94, 782
BseGI	GGATG	3 cut(s)	405, 476, 586
BseJI	GATNNNNATC	2 cut(s)	360, 500
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	709, 792
BseNI	ACTGG	3 cut(s)	314, 544, 854
BseYI	CCCAGC	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	704
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	214, 837
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	708, 793
BspFNI	CGCG	1 cut(s)	704
BspLI	GGNNCC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	314, 544, 854
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	44, 94, 782
BssMI	GATC	2 cut(s)	214, 837
BssNAI	GTATAC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	3 cut(s)	44, 94, 782
Bst1107I	GTATAC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	305, 424
BstACI	GRCGYC	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	101, 665
BstDEI	CTNAG	3 cut(s)	193, 695, 801
BstF5I	GGATG	3 cut(s)	405, 476, 586
BstFNI	CGCG	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	2 cut(s)	217, 840
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	214, 837
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 377
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	2 cut(s)	181, 671
BstSCI	CCNGG	1 cut(s)	672
BstSFI	CTRYAG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	704
BstZ17I	GTATAC	1 cut(s)	169
BsuI	GTATCC	2 cut(s)	128, 443
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	405, 476, 586
Cac8I	GCNNGC	2 cut(s)	101, 665
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	175, 198, 253, 714
CviAII	CATG	5 cut(s)	178, 209, 299, 478, 668
CviQI	GTAC	4 cut(s)	175, 198, 253, 714
DdeI	CTNAG	3 cut(s)	193, 695, 801
DpnI	GATC	2 cut(s)	216, 839
DpnII	GATC	2 cut(s)	214, 837
Eco130I	CCWWGG	3 cut(s)	44, 94, 782
Eco32I	GATATC	2 cut(s)	331, 502
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	672
EcoRV	GATATC	2 cut(s)	331, 502
EcoT14I	CCWWGG	3 cut(s)	44, 94, 782
ErhI	CCWWGG	3 cut(s)	44, 94, 782
FaeI	CATG	5 cut(s)	181, 212, 302, 481, 671
FalI	AAGNNNNNCTT	4 cut(s)	669, 701, 824, 856
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	5 cut(s)	177, 208, 298, 477, 667
FblI	GTMKAC	2 cut(s)	168, 555
FokI	GGATG	3 cut(s)	412, 483, 593
FspBI	CTAG	3 cut(s)	95, 638, 871
GlaI	GCGC	1 cut(s)	705
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	628
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	706
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	181, 212, 302, 481, 671
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HinfI	GANTC	7 cut(s)	6, 88, 361, 572, 641, 699, 820
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	3 cut(s)	287, 314, 843
Hpy166II	GTNNAC	2 cut(s)	169, 556
Hpy188I	TCNGA	3 cut(s)	107, 698, 802
Hpy188III	TCNNGA	2 cut(s)	222, 365
Hpy8I	GTNNAC	2 cut(s)	169, 556
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	2 cut(s)	305, 424
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	4 cut(s)	203, 409, 458, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 377
HpyF3I	CTNAG	3 cut(s)	193, 695, 801
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	5 cut(s)	181, 212, 302, 481, 671
HspAI	GCGC	1 cut(s)	704
Kzo9I	GATC	2 cut(s)	214, 837
LmnI	GCTCC	1 cut(s)	108
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	3 cut(s)	95, 638, 871
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	216, 839
MboI	GATC	2 cut(s)	214, 837
MboII	GAAGA	4 cut(s)	284, 616, 641, 689
MluCI	AATT	3 cut(s)	227, 286, 805
MlyI	GAGTC	2 cut(s)	635, 814
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	33, 61, 149, 262, 562, 650, 766, 780, 859
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	2 cut(s)	40, 377
NdeII	GATC	2 cut(s)	214, 837
NlaIII	CATG	5 cut(s)	181, 212, 302, 481, 671
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	2 cut(s)	181, 671
NspV	TTCGAA	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	6, 88, 361, 572, 699
PfoI	TCCNGGA	1 cut(s)	672
PleI	GAGTC	2 cut(s)	635, 814
PpsI	GAGTC	2 cut(s)	635, 814
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
RsaI	GTAC	4 cut(s)	176, 199, 254, 715
RsaNI	GTAC	4 cut(s)	175, 198, 253, 714
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	214, 837
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	635, 814
ScrFI	CCNGG	1 cut(s)	674
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	505
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	3 cut(s)	227, 286, 805
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	3 cut(s)	95, 638, 871
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	3 cut(s)	44, 94, 782
TaaI	ACNGT	2 cut(s)	305, 424
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	354, 567, 598
TasI	AATT	3 cut(s)	227, 286, 805
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	5 cut(s)	6, 88, 361, 572, 699
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	162, 494, 504
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	2 cut(s)	181, 671
XmaJI	CCTAGG	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	168, 555
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	3 cut(s)	95, 638, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.