Trafficking protein particle complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16280 AT5G16280 |
| fragaria_vesca | FvH4_6g20450 FvH4_6g20450 FvH4_6g20450 FvH4_6g20450 |
| malus_domestica | MD12G1041600.v1.1 MD14G1040700.v1.1 |
| prunus_persica | Prupe.7G093600_v2.0.a1 |
| pyrus_communis | pycom12g03630 pycom14g03450 |
| rosa_chinensis | RchiOBHm_Chr3g0476301 |
| rosa_laevigata | RLG00000023780 |
| rosa_multiflora | Rmu_sc0000114.1_g000012 |
| rosa_roxburghii | Rroxscaffold_6G00405410 |
| rosa_rugosa | Rorug03G0153400 |
| rosa_samantha | Rh3AG204600 Rh3BG236000 Rh3CG230700 Rh3DG230500 |
| rosa_wichuraiana | Rw3G018590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1914 |
| AarI | CACCTGC | 1 cut(s) | 1276 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 38, 635, 4009 |
| Acc16I | TGCGCA | 1 cut(s) | 3266 |
| Acc36I | ACCTGC | 2 cut(s) | 1276, 3922 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3741 |
| AccI | GTMKAC | 3 cut(s) | 1385, 2252, 2713 |
| AccII | CGCG | 2 cut(s) | 64, 3252 |
| AccIII | TCCGGA | 2 cut(s) | 471, 1311 |
| AciI | CCGC | 4 cut(s) | 64, 2703, 3557, 3644 |
| AclI | AACGTT | 1 cut(s) | 1188 |
| AclWI | GGATC | 5 cut(s) | 284, 401, 414, 3359, 3671 |
| AcoI | YGGCCR | 1 cut(s) | 3200 |
| AcsI | RAATTY | 5 cut(s) | 2379, 2878, 2945, 3448, 3591 |
| AcuI | CTGAAG | 8 cut(s) | 584, 789, 1002, 1170, 2108, 3474, 3668, 3888 |
| AcvI | CACGTG | 1 cut(s) | 3007 |
| AcyI | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| AdeI | CACNNNGTG | 3 cut(s) | 1373, 1658, 2839 |
| AfaI | GTAC | 8 cut(s) | 21, 813, 1057, 1700, 2179, 3096, 3508, 3718 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 696, 697, 3484, 3485, 3741 |
| AflII | CTTAAG | 1 cut(s) | 3425 |
| AflIII | ACRYGT | 2 cut(s) | 1270, 3006 |
| AhlI | ACTAGT | 1 cut(s) | 2684 |
| AjiI | CACGTC | 3 cut(s) | 1357, 3610, 3921 |
| AjnI | CCWGG | 9 cut(s) | 174, 271, 690, 1508, 2723, 3097, 3192, 4004, 4212 |
| AleI | CACNNNNGTG | 1 cut(s) | 455 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 497, 529, 4084, 4116 |
| Alw21I | GWGCWC | 6 cut(s) | 336, 471, 725, 3728, 4000, 4242 |
| Alw26I | GTCTC | 6 cut(s) | 259, 2519, 3015, 3349, 3455, 3600 |
| AlwI | GGATC | 5 cut(s) | 284, 401, 414, 3359, 3671 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 767 |
| Ama87I | CYCGRG | 3 cut(s) | 54, 296, 327 |
| Aor13HI | TCCGGA | 2 cut(s) | 471, 1311 |
| AoxI | GGCC | 8 cut(s) | 508, 533, 693, 939, 1375, 2721, 3071, 3200 |
| ApeKI | GCWGC | 9 cut(s) | 1601, 1709, 1775, 2195, 2198, 3089, 3516, 3583, 3782 |
| ApoI | RAATTY | 5 cut(s) | 2379, 2878, 2945, 3448, 3591 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 284, 316, 4123, 4155 |
| AseI | ATTAAT | 3 cut(s) | 741, 2481, 2742 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2085, 2244 |
| AspLEI | GCGC | 4 cut(s) | 618, 1529, 3252, 3267 |
| AspS9I | GGNCC | 8 cut(s) | 534, 940, 964, 1564, 3524, 3755, 4002, 4047 |
| AsuC2I | CCSGG | 5 cut(s) | 55, 56, 697, 4051, 4128 |
| AsuHPI | GGTGA | 9 cut(s) | 70, 79, 350, 472, 1359, 1436, 1856, 2582, 4196 |
| AsuNHI | GCTAGC | 1 cut(s) | 3542 |
| AvaI | CYCGRG | 3 cut(s) | 54, 296, 327 |
| AvaII | GGWCC | 6 cut(s) | 964, 1564, 3524, 3755, 4002, 4047 |
| AxyI | CCTNAGG | 1 cut(s) | 2066 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 36, 3700, 3733 |
| BalI | TGGCCA | 1 cut(s) | 3202 |
| BamHI | GGATCC | 1 cut(s) | 406 |
| BanII | GRGCYC | 3 cut(s) | 336, 2493, 4000 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1078, 1110 |
| BbrPI | CACGTG | 1 cut(s) | 3007 |
| BbsI | GAAGAC | 5 cut(s) | 398, 538, 1017, 1359, 3915 |
| Bbv12I | GWGCWC | 6 cut(s) | 336, 471, 725, 3728, 4000, 4242 |
| BbvCI | CCTCAGC | 1 cut(s) | 1737 |
| BbvI | GCAGC | 9 cut(s) | 1588, 1696, 1787, 2185, 2207, 3101, 3528, 3595, 3794 |
| BceAI | ACGGC | 3 cut(s) | 339, 523, 2846 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 916, 950, 2566, 2600 |
| BciT130I | CCWGG | 9 cut(s) | 176, 273, 692, 1510, 2725, 3099, 3194, 4006, 4214 |
| BciVI | GTATCC | 2 cut(s) | 225, 4230 |
| BclI | TGATCA | 4 cut(s) | 583, 847, 889, 1864 |
| BcnI | CCSGG | 5 cut(s) | 55, 56, 697, 4051, 4128 |
| BcoDI | GTCTC | 6 cut(s) | 259, 2519, 3015, 3349, 3455, 3600 |
| BcuI | ACTAGT | 1 cut(s) | 2684 |
| BfaI | CTAG | 7 cut(s) | 1161, 1299, 1635, 2685, 3543, 3746, 3927 |
| BfmI | CTRYAG | 5 cut(s) | 919, 2029, 2193, 3581, 3712 |
| BfrI | CTTAAG | 1 cut(s) | 3425 |
| BfuAI | ACCTGC | 2 cut(s) | 1276, 3922 |
| BfuI | GTATCC | 2 cut(s) | 225, 4230 |
| BglII | AGATCT | 2 cut(s) | 706, 1213 |
| BisI | GCNGC | 9 cut(s) | 1602, 1710, 1776, 2196, 2199, 3090, 3517, 3584, 3783 |
| BlsI | GCNGC | 9 cut(s) | 1603, 1711, 1777, 2197, 2200, 3091, 3518, 3585, 3784 |
| Bme18I | GGWCC | 6 cut(s) | 964, 1564, 3524, 3755, 4002, 4047 |
| BmeT110I | CYCGRG | 3 cut(s) | 54, 296, 327 |
| BmgBI | CACGTC | 3 cut(s) | 1357, 3610, 3921 |
| BmgT120I | GGNCC | 8 cut(s) | 534, 940, 964, 1564, 3524, 3755, 4002, 4047 |
| BmiI | GGNNCC | 7 cut(s) | 408, 966, 1743, 1931, 2247, 4080, 4166 |
| BmrI | ACTGGG | 1 cut(s) | 1365 |
| BmsI | GCATC | 4 cut(s) | 1588, 2044, 2195, 3854 |
| BmtI | GCTAGC | 1 cut(s) | 3546 |
| BmuI | ACTGGG | 1 cut(s) | 1365 |
| BoxI | GACNNNNGTC | 2 cut(s) | 189, 2685 |
| BpiI | GAAGAC | 5 cut(s) | 398, 538, 1017, 1359, 3915 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 707, 739, 3452, 3484 |
| BpmI | CTGGAG | 4 cut(s) | 301, 2300, 4097, 4226 |
| Bpu10I | CCTNAGC | 2 cut(s) | 530, 1737 |
| BpuEI | CTTGAG | 2 cut(s) | 1083, 1787 |
| BpuMI | CCSGG | 5 cut(s) | 55, 56, 697, 4051, 4128 |
| Bsa29I | ATCGAT | 1 cut(s) | 3534 |
| BsaAI | YACGTR | 3 cut(s) | 1271, 1890, 3007 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2354 |
| BsaHI | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| BsaI | GGTCTC | 2 cut(s) | 2519, 3349 |
| BsaWI | WCCGGW | 3 cut(s) | 454, 471, 1311 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 497, 527, 2328, 2358, 2584, 2614, 3454, 3484 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 696, 697, 3484, 3485, 3741 |
| Bse118I | RCCGGY | 2 cut(s) | 594, 937 |
| Bse1I | ACTGG | 8 cut(s) | 996, 1371, 1567, 2266, 2342, 3558, 4080, 4243 |
| Bse21I | CCTNAGG | 1 cut(s) | 2066 |
| Bse3DI | GCAATG | 4 cut(s) | 45, 966, 3062, 3840 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2354 |
| BseAI | TCCGGA | 2 cut(s) | 471, 1311 |
| BseBI | CCWGG | 9 cut(s) | 176, 273, 692, 1510, 2725, 3099, 3194, 4006, 4214 |
| BseCI | ATCGAT | 1 cut(s) | 3534 |
| BseGI | GGATG | 9 cut(s) | 850, 892, 1603, 2899, 3217, 3277, 3464, 3757, 3947 |
| BseJI | GATNNNNATC | 1 cut(s) | 2354 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 696, 697, 3484, 3485, 3741 |
| BseMI | GCAATG | 4 cut(s) | 45, 966, 3062, 3840 |
| BseNI | ACTGG | 8 cut(s) | 996, 1371, 1567, 2266, 2342, 3558, 4080, 4243 |
| BseRI | GAGGAG | 7 cut(s) | 85, 458, 1066, 1754, 2249, 2378, 2580 |
| BseXI | GCAGC | 9 cut(s) | 1588, 1696, 1787, 2185, 2207, 3101, 3528, 3595, 3794 |
| Bsh1236I | CGCG | 2 cut(s) | 64, 3252 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3644 |
| BshFI | GGCC | 8 cut(s) | 510, 535, 695, 941, 1377, 2723, 3073, 3202 |
| BshVI | ATCGAT | 1 cut(s) | 3534 |
| BsiEI | CGRYCG | 1 cut(s) | 3644 |
| BsiHKAI | GWGCWC | 6 cut(s) | 336, 471, 725, 3728, 4000, 4242 |
| BsiHKCI | CYCGRG | 3 cut(s) | 54, 296, 327 |
| BslFI | GGGAC | 6 cut(s) | 2084, 2485, 2673, 3116, 3717, 4144 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 696, 697, 3484, 3485, 3741 |
| BsmAI | GTCTC | 6 cut(s) | 259, 2519, 3015, 3349, 3455, 3600 |
| BsmBI | CGTCTC | 1 cut(s) | 3600 |
| BsmFI | GGGAC | 6 cut(s) | 2084, 2485, 2673, 3116, 3717, 4144 |
| BsmI | GAATGC | 2 cut(s) | 1651, 2980 |
| BsnI | GGCC | 8 cut(s) | 510, 535, 695, 941, 1377, 2723, 3073, 3202 |
| Bso31I | GGTCTC | 2 cut(s) | 2519, 3349 |
| BsoBI | CYCGRG | 3 cut(s) | 54, 296, 327 |
| Bsp1286I | GDGCHC | 7 cut(s) | 336, 471, 725, 2493, 3728, 4000, 4242 |
| Bsp13I | TCCGGA | 2 cut(s) | 471, 1311 |
| Bsp1407I | TGTACA | 1 cut(s) | 811 |
| Bsp19I | CCATGG | 1 cut(s) | 399 |
| BspACI | CCGC | 4 cut(s) | 64, 2703, 3557, 3644 |
| BspANI | GGCC | 8 cut(s) | 510, 535, 695, 941, 1377, 2723, 3073, 3202 |
| BspDI | ATCGAT | 1 cut(s) | 3534 |
| BspEI | TCCGGA | 2 cut(s) | 471, 1311 |
| BspFNI | CGCG | 2 cut(s) | 64, 3252 |
| BspLI | GGNNCC | 7 cut(s) | 408, 966, 1743, 1931, 2247, 4080, 4166 |
| BspMAI | CTGCAG | 3 cut(s) | 2197, 3585, 3716 |
| BspMI | ACCTGC | 2 cut(s) | 1276, 3922 |
| BspOI | GCTAGC | 1 cut(s) | 3546 |
| BspPI | GGATC | 5 cut(s) | 284, 401, 414, 3359, 3671 |
| BspQI | GCTCTTC | 1 cut(s) | 1983 |
| BspTI | CTTAAG | 1 cut(s) | 3425 |
| BspTNI | GGTCTC | 2 cut(s) | 2519, 3349 |
| BsrDI | GCAATG | 4 cut(s) | 45, 966, 3062, 3840 |
| BsrFI | RCCGGY | 2 cut(s) | 594, 937 |
| BsrGI | TGTACA | 1 cut(s) | 811 |
| BsrI | ACTGG | 8 cut(s) | 996, 1371, 1567, 2266, 2342, 3558, 4080, 4243 |
| BssAI | RCCGGY | 2 cut(s) | 594, 937 |
| BssNAI | GTATAC | 1 cut(s) | 1386 |
| BssNI | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| BssT1I | CCWWGG | 3 cut(s) | 399, 1130, 3991 |
| Bst1107I | GTATAC | 1 cut(s) | 1386 |
| Bst2UI | CCWGG | 9 cut(s) | 176, 273, 692, 1510, 2725, 3099, 3194, 4006, 4214 |
| Bst4CI | ACNGT | 8 cut(s) | 753, 820, 1717, 1968, 2596, 3569, 3619, 4237 |
| Bst6I | CTCTTC | 3 cut(s) | 1021, 1176, 1983 |
| BstACI | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| BstAFI | CTTAAG | 1 cut(s) | 3425 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2192 |
| BstAUI | TGTACA | 1 cut(s) | 811 |
| BstBAI | YACGTR | 3 cut(s) | 1271, 1890, 3007 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 9 cut(s) | 850, 892, 1603, 2899, 3217, 3277, 3464, 3757, 3947 |
| BstFNI | CGCG | 2 cut(s) | 64, 3252 |
| BstHHI | GCGC | 4 cut(s) | 618, 1529, 3252, 3267 |
| BstMAI | GTCTC | 6 cut(s) | 259, 2519, 3015, 3349, 3455, 3600 |
| BstMCI | CGRYCG | 1 cut(s) | 3644 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 331, 475, 943, 1282, 1524, 2128, 2192, 3174, 3401 |
| BstNI | CCWGG | 9 cut(s) | 176, 273, 692, 1510, 2725, 3099, 3194, 4006, 4214 |
| BstNSI | RCATGY | 5 cut(s) | 864, 1880, 3181, 3708, 4212 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 189, 2685 |
| BstSFI | CTRYAG | 5 cut(s) | 919, 2029, 2193, 3581, 3712 |
| BstUI | CGCG | 2 cut(s) | 64, 3252 |
| BstV1I | GCAGC | 9 cut(s) | 1588, 1696, 1787, 2185, 2207, 3101, 3528, 3595, 3794 |
| BstV2I | GAAGAC | 5 cut(s) | 398, 538, 1017, 1359, 3915 |
| BstX2I | RGATCY | 4 cut(s) | 276, 406, 706, 1213 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3069, 4044 |
| BstYI | RGATCY | 4 cut(s) | 276, 406, 706, 1213 |
| BstZ17I | GTATAC | 1 cut(s) | 1386 |
| Bsu15I | ATCGAT | 1 cut(s) | 3534 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2066 |
| BsuI | GTATCC | 2 cut(s) | 225, 4230 |
| BsuRI | GGCC | 8 cut(s) | 510, 535, 695, 941, 1377, 2723, 3073, 3202 |
| BsuTUI | ATCGAT | 1 cut(s) | 3534 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtgZI | GCGATG | 1 cut(s) | 2526 |
| BtrI | CACGTC | 3 cut(s) | 1357, 3610, 3921 |
| BtsCI | GGATG | 9 cut(s) | 850, 892, 1603, 2899, 3217, 3277, 3464, 3757, 3947 |
| BtsI | GCAGTG | 1 cut(s) | 2763 |
| BtsIMutI | CAGTG | 8 cut(s) | 302, 749, 1378, 1973, 2763, 3551, 3565, 4026 |
| BveI | ACCTGC | 2 cut(s) | 1276, 3922 |
| CaiI | CAGNNNCTG | 1 cut(s) | 767 |
| CfoI | GCGC | 4 cut(s) | 618, 1529, 3252, 3267 |
| Cfr10I | RCCGGY | 2 cut(s) | 594, 937 |
| Cfr13I | GGNCC | 8 cut(s) | 534, 940, 964, 1564, 3524, 3755, 4002, 4047 |
| Cfr9I | CCCGGG | 1 cut(s) | 54 |
| ClaI | ATCGAT | 1 cut(s) | 3534 |
| CseI | GACGC | 5 cut(s) | 70, 277, 484, 532, 2717 |
| Csp6I | GTAC | 8 cut(s) | 20, 812, 1056, 1699, 2178, 3095, 3507, 3717 |
| CviQI | GTAC | 8 cut(s) | 20, 812, 1056, 1699, 2178, 3095, 3507, 3717 |
| DraI | TTTAAA | 3 cut(s) | 1620, 2748, 2883 |
| DraIII | CACNNNGTG | 3 cut(s) | 1373, 1658, 2839 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 38, 635, 4009 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 38, 635, 4009 |
| EaeI | YGGCCR | 1 cut(s) | 3200 |
| Eam1104I | CTCTTC | 3 cut(s) | 1021, 1176, 1983 |
| EarI | CTCTTC | 3 cut(s) | 1021, 1176, 1983 |
| EciI | GGCGGA | 1 cut(s) | 3572 |
| Ecl136II | GAGCTC | 2 cut(s) | 334, 3998 |
| Eco130I | CCWWGG | 3 cut(s) | 399, 1130, 3991 |
| Eco24I | GRGCYC | 3 cut(s) | 336, 2493, 4000 |
| Eco31I | GGTCTC | 2 cut(s) | 2519, 3349 |
| Eco32I | GATATC | 2 cut(s) | 2356, 3636 |
| Eco47I | GGWCC | 6 cut(s) | 964, 1564, 3524, 3755, 4002, 4047 |
| Eco53kI | GAGCTC | 2 cut(s) | 334, 3998 |
| Eco57I | CTGAAG | 8 cut(s) | 584, 789, 1002, 1170, 2108, 3474, 3668, 3888 |
| Eco72I | CACGTG | 1 cut(s) | 3007 |
| Eco81I | CCTNAGG | 1 cut(s) | 2066 |
| Eco88I | CYCGRG | 3 cut(s) | 54, 296, 327 |
| EcoICRI | GAGCTC | 2 cut(s) | 334, 3998 |
| EcoO109I | RGGNCCY | 1 cut(s) | 534 |
| EcoRII | CCWGG | 9 cut(s) | 174, 271, 690, 1508, 2723, 3097, 3192, 4004, 4212 |
| EcoRV | GATATC | 2 cut(s) | 2356, 3636 |
| EcoT14I | CCWWGG | 3 cut(s) | 399, 1130, 3991 |
| EcoT22I | ATGCAT | 5 cut(s) | 1630, 2188, 3183, 3706, 3857 |
| EcoT38I | GRGCYC | 3 cut(s) | 336, 2493, 4000 |
| ErhI | CCWWGG | 3 cut(s) | 399, 1130, 3991 |
| Esp3I | CGTCTC | 1 cut(s) | 3600 |
| FaqI | GGGAC | 6 cut(s) | 2084, 2485, 2673, 3116, 3717, 4144 |
| FauI | CCCGC | 2 cut(s) | 57, 2696 |
| FauNDI | CATATG | 1 cut(s) | 2010 |
| FbaI | TGATCA | 4 cut(s) | 583, 847, 889, 1864 |
| FblI | GTMKAC | 3 cut(s) | 1385, 2252, 2713 |
| Fnu4HI | GCNGC | 9 cut(s) | 1602, 1710, 1776, 2196, 2199, 3090, 3517, 3584, 3783 |
| FokI | GGATG | 9 cut(s) | 837, 899, 1610, 2886, 3224, 3284, 3451, 3764, 3954 |
| FriOI | GRGCYC | 3 cut(s) | 336, 2493, 4000 |
| Fsp4HI | GCNGC | 9 cut(s) | 1602, 1710, 1776, 2196, 2199, 3090, 3517, 3584, 3783 |
| FspAI | RTGCGCAY | 1 cut(s) | 3266 |
| FspBI | CTAG | 7 cut(s) | 1161, 1299, 1635, 2685, 3543, 3746, 3927 |
| FspI | TGCGCA | 1 cut(s) | 3266 |
| GlaI | GCGC | 4 cut(s) | 617, 1528, 3251, 3266 |
| GluI | GCNGC | 9 cut(s) | 1602, 1710, 1776, 2196, 2199, 3090, 3517, 3584, 3783 |
| GsuI | CTGGAG | 4 cut(s) | 301, 2300, 4097, 4226 |
| HaeIII | GGCC | 8 cut(s) | 510, 535, 695, 941, 1377, 2723, 3073, 3202 |
| HgaI | GACGC | 5 cut(s) | 70, 277, 484, 532, 2717 |
| HhaI | GCGC | 4 cut(s) | 618, 1529, 3252, 3267 |
| Hin1I | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| Hin6I | GCGC | 4 cut(s) | 616, 1527, 3250, 3265 |
| HinP1I | GCGC | 4 cut(s) | 616, 1527, 3250, 3265 |
| HincII | GTYRAC | 3 cut(s) | 1166, 2259, 3622 |
| HindII | GTYRAC | 3 cut(s) | 1166, 2259, 3622 |
| HindIII | AAGCTT | 5 cut(s) | 840, 1496, 2120, 2294, 2777 |
| HphI | GGTGA | 9 cut(s) | 70, 79, 350, 472, 1359, 1436, 1856, 2582, 4196 |
| Hpy99I | CGWCG | 7 cut(s) | 44, 342, 345, 348, 351, 354, 563 |
| HpyCH4III | ACNGT | 8 cut(s) | 753, 820, 1717, 1968, 2596, 3569, 3619, 4237 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 331, 475, 943, 1282, 1524, 2128, 2192, 3174, 3401 |
| Hsp92I | GRCGYC | 3 cut(s) | 269, 476, 2728 |
| HspAI | GCGC | 4 cut(s) | 616, 1527, 3250, 3265 |
| Kpn2I | TCCGGA | 2 cut(s) | 471, 1311 |
| KroI | GCCGGC | 1 cut(s) | 937 |
| KroNI | GCCGGC | 1 cut(s) | 939 |
| Ksp22I | TGATCA | 4 cut(s) | 583, 847, 889, 1864 |
| LguI | GCTCTTC | 1 cut(s) | 1983 |
| Lsp1109I | GCAGC | 9 cut(s) | 1588, 1696, 1787, 2185, 2207, 3101, 3528, 3595, 3794 |
| LweI | GCATC | 4 cut(s) | 1588, 2044, 2195, 3854 |
| MaeI | CTAG | 7 cut(s) | 1161, 1299, 1635, 2685, 3543, 3746, 3927 |
| MflI | RGATCY | 4 cut(s) | 276, 406, 706, 1213 |
| MhlI | GDGCHC | 7 cut(s) | 336, 471, 725, 2493, 3728, 4000, 4242 |
| MlsI | TGGCCA | 1 cut(s) | 3202 |
| MluNI | TGGCCA | 1 cut(s) | 3202 |
| MlyI | GAGTC | 8 cut(s) | 308, 316, 623, 1007, 2467, 2513, 2572, 3863 |
| MmeI | TCCRAC | 2 cut(s) | 1542, 1995 |
| Mox20I | TGGCCA | 1 cut(s) | 3202 |
| Mph1103I | ATGCAT | 5 cut(s) | 1630, 2188, 3183, 3706, 3857 |
| MroI | TCCGGA | 2 cut(s) | 471, 1311 |
| MroNI | GCCGGC | 1 cut(s) | 937 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2085, 2244 |
| MscI | TGGCCA | 1 cut(s) | 3202 |
| MslI | CAYNNNNRTG | 7 cut(s) | 455, 1818, 2511, 3067, 3409, 3570, 3850 |
| Msp20I | TGGCCA | 1 cut(s) | 3202 |
| MspA1I | CMGCKG | 3 cut(s) | 2198, 3092, 3646 |
| MspCI | CTTAAG | 1 cut(s) | 3425 |
| Mva1269I | GAATGC | 2 cut(s) | 1651, 2980 |
| MvaI | CCWGG | 9 cut(s) | 176, 273, 692, 1510, 2725, 3099, 3194, 4006, 4214 |
| MvnI | CGCG | 2 cut(s) | 64, 3252 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 331, 475, 943, 1282, 1524, 2128, 2192, 3174, 3401 |
| NaeI | GCCGGC | 1 cut(s) | 939 |
| NciI | CCSGG | 5 cut(s) | 55, 56, 697, 4051, 4128 |
| NcoI | CCATGG | 1 cut(s) | 399 |
| NdeI | CATATG | 1 cut(s) | 2010 |
| NgoMIV | GCCGGC | 1 cut(s) | 937 |
| NheI | GCTAGC | 1 cut(s) | 3542 |
| NlaIV | GGNNCC | 7 cut(s) | 408, 966, 1743, 1931, 2247, 4080, 4166 |
| NmuCI | GTSAC | 4 cut(s) | 58, 300, 356, 3976 |
| NsbI | TGCGCA | 1 cut(s) | 3266 |
| NsiI | ATGCAT | 5 cut(s) | 1630, 2188, 3183, 3706, 3857 |
| NspI | RCATGY | 5 cut(s) | 864, 1880, 3181, 3708, 4212 |
| OliI | CACNNNNGTG | 1 cut(s) | 455 |
| PaeI | GCATGC | 2 cut(s) | 3181, 4212 |
| PaeR7I | CTCGAG | 1 cut(s) | 327 |
| PaqCI | CACCTGC | 1 cut(s) | 1276 |
| PciSI | GCTCTTC | 1 cut(s) | 1983 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 334, 346, 352, 392 |
| PctI | GAATGC | 2 cut(s) | 1651, 2980 |
| PdiI | GCCGGC | 1 cut(s) | 939 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2085, 2244 |
| PfeI | GAWTC | 9 cut(s) | 764, 1279, 1315, 1364, 1403, 2315, 2907, 3896, 4099 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3741 |
| PkrI | GCNGC | 9 cut(s) | 1603, 1711, 1777, 2197, 2200, 3091, 3518, 3585, 3784 |
| PleI | GAGTC | 8 cut(s) | 307, 315, 623, 1007, 2467, 2513, 2572, 3863 |
| PmaCI | CACGTG | 1 cut(s) | 3007 |
| PmlI | CACGTG | 1 cut(s) | 3007 |
| PpsI | GAGTC | 8 cut(s) | 307, 315, 623, 1007, 2467, 2513, 2572, 3863 |
| Ppu21I | YACGTR | 3 cut(s) | 1271, 1890, 3007 |
| PshAI | GACNNNNGTC | 2 cut(s) | 189, 2685 |
| PshBI | ATTAAT | 3 cut(s) | 741, 2481, 2742 |
| PsiI | TTATAA | 1 cut(s) | 1914 |
| Psp124BI | GAGCTC | 2 cut(s) | 336, 4000 |
| Psp1406I | AACGTT | 1 cut(s) | 1188 |
| Psp6I | CCWGG | 9 cut(s) | 174, 271, 690, 1508, 2723, 3097, 3192, 4004, 4212 |
| PspCI | CACGTG | 1 cut(s) | 3007 |
| PspGI | CCWGG | 9 cut(s) | 174, 271, 690, 1508, 2723, 3097, 3192, 4004, 4212 |
| PspN4I | GGNNCC | 7 cut(s) | 408, 966, 1743, 1931, 2247, 4080, 4166 |
| PspPI | GGNCC | 8 cut(s) | 534, 940, 964, 1564, 3524, 3755, 4002, 4047 |
| PstI | CTGCAG | 3 cut(s) | 2197, 3585, 3716 |
| PstNI | CAGNNNCTG | 1 cut(s) | 767 |
| PsuI | RGATCY | 4 cut(s) | 276, 406, 706, 1213 |
| PvuII | CAGCTG | 2 cut(s) | 2198, 3092 |
| RsaI | GTAC | 8 cut(s) | 21, 813, 1057, 1700, 2179, 3096, 3508, 3718 |
| RsaNI | GTAC | 8 cut(s) | 20, 812, 1056, 1699, 2178, 3095, 3507, 3717 |
| RseI | CAYNNNNRTG | 7 cut(s) | 455, 1818, 2511, 3067, 3409, 3570, 3850 |
| SacI | GAGCTC | 2 cut(s) | 336, 4000 |
| SapI | GCTCTTC | 1 cut(s) | 1983 |
| SatI | GCNGC | 9 cut(s) | 1602, 1710, 1776, 2196, 2199, 3090, 3517, 3584, 3783 |
| Sau96I | GGNCC | 8 cut(s) | 534, 940, 964, 1564, 3524, 3755, 4002, 4047 |
| SchI | GAGTC | 8 cut(s) | 308, 316, 623, 1007, 2467, 2513, 2572, 3863 |
| SduI | GDGCHC | 7 cut(s) | 336, 471, 725, 2493, 3728, 4000, 4242 |
| SfaNI | GCATC | 4 cut(s) | 1588, 2044, 2195, 3854 |
| SfcI | CTRYAG | 5 cut(s) | 919, 2029, 2193, 3581, 3712 |
| Sfr274I | CTCGAG | 1 cut(s) | 327 |
| SinI | GGWCC | 6 cut(s) | 964, 1564, 3524, 3755, 4002, 4047 |
| SlaI | CTCGAG | 1 cut(s) | 327 |
| SmaI | CCCGGG | 1 cut(s) | 56 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 455, 1818, 2511, 3067, 3409, 3570, 3850 |
| SmlI | CTYRAG | 4 cut(s) | 327, 1098, 1766, 3425 |
| SmoI | CTYRAG | 4 cut(s) | 327, 1098, 1766, 3425 |
| SpeI | ACTAGT | 1 cut(s) | 2684 |
| SphI | GCATGC | 2 cut(s) | 3181, 4212 |
| SsiI | CCGC | 4 cut(s) | 64, 2703, 3557, 3644 |
| SspI | AATATT | 1 cut(s) | 2143 |
| SspMI | CTAG | 7 cut(s) | 1161, 1299, 1635, 2685, 3543, 3746, 3927 |
| SstI | GAGCTC | 2 cut(s) | 336, 4000 |
| StyI | CCWWGG | 3 cut(s) | 399, 1130, 3991 |
| TaaI | ACNGT | 8 cut(s) | 753, 820, 1717, 1968, 2596, 3569, 3619, 4237 |
| TatI | WGTACW | 2 cut(s) | 811, 1698 |
| TfiI | GAWTC | 9 cut(s) | 764, 1279, 1315, 1364, 1403, 2315, 2907, 3896, 4099 |
| TscAI | CASTG | 8 cut(s) | 309, 756, 1378, 1973, 2763, 3558, 3572, 4026 |
| TseFI | GTSAC | 4 cut(s) | 58, 300, 356, 3976 |
| TseI | GCWGC | 9 cut(s) | 1601, 1709, 1775, 2195, 2198, 3089, 3516, 3583, 3782 |
| Tsp45I | GTSAC | 4 cut(s) | 58, 300, 356, 3976 |
| TspGWI | ACGGA | 4 cut(s) | 126, 326, 685, 2238 |
| TspMI | CCCGGG | 1 cut(s) | 54 |
| TspRI | CASTG | 8 cut(s) | 309, 756, 1378, 1973, 2763, 3558, 3572, 4026 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3741 |
| Vha464I | CTTAAG | 1 cut(s) | 3425 |
| VpaK11BI | GGWCC | 6 cut(s) | 964, 1564, 3524, 3755, 4002, 4047 |
| VspI | ATTAAT | 3 cut(s) | 741, 2481, 2742 |
| XapI | RAATTY | 5 cut(s) | 2379, 2878, 2945, 3448, 3591 |
| XceI | RCATGY | 5 cut(s) | 864, 1880, 3181, 3708, 4212 |
| XhoI | CTCGAG | 1 cut(s) | 327 |
| XmaI | CCCGGG | 1 cut(s) | 54 |
| XmiI | GTMKAC | 3 cut(s) | 1385, 2252, 2713 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2085, 2244 |
| XspI | CTAG | 7 cut(s) | 1161, 1299, 1635, 2685, 3543, 3746, 3927 |
| Zsp2I | ATGCAT | 5 cut(s) | 1630, 2188, 3183, 3706, 3857 |