Rorug03G0153400

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010066
Physical Location & Seq
Forward (+)
12598297 .. 12608693
10397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0153400.1

Sequence Viewer

Length: 4080 bp
ATGGCAGAGTTCTTTACTTTCGTTCCCCAGGAAATGCTCACGAAACTGGCTTCACTAGCCGGAAAAGAACTCAGACTTCAATGGGGATTCAATGAAGAATTAACAAAGCTGTGTGAAACACTATTCATGCTTGAAGCTTTGCTACGTGATGCCGACCATCCGCGACACAATCAGGGTGAGGCGGTGCAGCGGTGGGTGGCGAAGCTTGAACACATAGCTCATGATGCTGATGATGTATTGGATGAGTGCAAATATGAAGAGCTCCGGCGTCAAGTAGAGGCGCGGACCCGAATCGACAGAATTCTCAAGTCCCTTCCACTCTCCAAGCCCAGATTTCGTCGGAAAATAGCACGGAAGATTCAGAAAATCACTGAATCTCTGGAGAATCTGAACAAAGTTGCTCCTAGTTATGGGTTACTTCGTACGCCATTGCCATCTGCAGATGCAACAACCTCTCATAAAAGGGAAACTTACTCCTTCTTTGATCAAGATGAAAACAAAATCATTGGCAGAGAGGAGGTAGTGTCTGATATAGTGACAAACTTGATAAACTCAAATAGTGGTCAAGCAAATCACCTTTCCGGTTTTGCTATTGTGGGTATGGGAGGCCTCGGGAAGACAACTGTGGCTAAAAAAGTATGTCATGATCCTAAGATAGAAGAGCACTTCGATCGAAAGATATGGATATGTGTATCTACTGATTTCCAAGTCGTGATGATATTAAGGAGGATCTGGCAATCTTTTAAACACAGAGCTGCAGTAGAAGGCAAGGATGAACTTTGTAAAACCCTCCAACAAGAGTTGAAAGGGAAAAGATATCTTCTCATACTCGATGATGTTTGGTGCCTTGAATCTGAAAAATGGGAAGAGTTGATCAATTGCTTGTTAAATGTTACTGATAGGGTGGGGTGCAACATCATTGTCACCACCCGCAACATGAGGGTTGCATCAACCATTGAATCAATTGTGCAAGCATTTTCTATATGTGAAATGGACAAGCTATCAGACGACCAATGTTGGCAGATATTGAAGAACAGAGCATTTTCAGATGGAGGTGCTCATATAAATAGAGATCAAGAAATCACTGGAAAGGAGATTGCTAGAAGGTGTGCAGGTTTACCACTAGTGGCGAAGGTTTTGGGAAACATGATGCTCTCCAAAATGAGTGATGGATGGGGGTCAATCCTAGAAAGCAGTATATGGGATTTGCCCGAAGGAGAAGAGAAAATCTTGTCGATTTTAAAGTTGAGTTTTGACGAACTAAAGTCACCATCTTTAAAACAATGTTTTGCATACTGCTCTAACTACATCAAAGATTTTGTATTCGAAAGGGAGGACTTAATCCAGCATTGGATGGCTCAAGGATGGCTACATCCTTCCAAGGAAAGAGAGATGGAAGATATAGGTGAAGAATATTTTAATATCCTACTGGAAAATTCTTTTTTTCAAGATGTTACAAGAGACTACTATGGAAATATCATCTATTGCAAGATGCACGATCTTGTGCATGATGTTGCAGAACGTGTATCAAAGTCTTGGCAGGAAAGAGGTCGCTCATTTGTTGGCGATCAAGTCTTTCTACCAAGCTTTCAAACTTTGCGAGTCTTAGGATTATACGGGCCAAATATCAAGGAGTTGCCAGTTTCAATTGGAAAAATGAAACACTTGAGGTATCTGGATATTTCTGATACAAGGATTACAACACTCCCCAAATCTATTGGCAAGCTTTATAACCTACAGACTTTGAAAATGGAAGGTCTCCGCTTGAAAGAGCTTCCAAAGGAATTGCTCAATTTGATCAATTTGAGACATATTTGTCCCATTAGATCAAGCGTATATCTTTCACAGCAGTTTCCATGGCCAGCTGGGATGGGGCGATTGACTAACCTTCAATCATTACCTTATTTTACGGTGCGTAAGGAGATAGGTTGGGGAATCGAGGAACTGGGCGGCTTGAAACAATTGAAAGGTGGACTAACTATTTATCATCTGGAACATGTGAGAGATAGAGAAGCAGCTAAGAAAGCAAATCTAGTGGGGAAGCGTATACGTGATTTAAGCTTTAGTTGGTCAAGTAACGAACACCGGGCAAGCAGCAGCAGCAACATTGATGAGGATGTACTGGAAGCACTTCAACCACACCCTACTTTGGAATTCTTAAAGATTGAAAACTTCATGGGTGATAAATTTCCTTCATGGATGATGAGCAAGTTGTCTCTACCCAGAAATTTGGAAGAGATCACATTTGGGGGCTGCAACAAATGTGAAGGAGTCCCAAAACTTGGCCATCTGCCTAATCTTAGATCTCTTCTCATGGACTACATGTCAAACCTGAAATGTCTAGGATCTGACTTTTACGGTTACGATCCCCATGAGGCTACGACAGGTTCTCAGACGAAGGCTCTGTTTCCTGCATTGAAGAGTTTGCATATTAAAAACGCCAAGAAGCTAATCGAATGGAGTGAACCACAAGTATTGTTGCCAACAGAGGTGTTTCCACGTCTTGAGGAGCTTATTCTGTGGGATTGTCACAAGTTAACAAGTGCTCCCACTTATTTTCCATCTCTTCAGAAGCTGAGTGTGATTAGAATGGATAGCGGTGTACCGGTAACAAGTATTCTTAGCAAACTGACCACTCTCACTTATCTCGATCTAGAATGGGCGGGAGGAGTTAACTGCCTGCCGGACGGGATGTTAAGGAACAACAAGAATCTTGAACTTTTGGGGCTACATCGTTGTTTGGAGTTAACTTGTATTGCTCCCCATGGATTTGGTTGTTGCACTTCTCTTCAGACACTGCATATTTCATACTGTCCTAAACTGAGGTATTTACCTGAGGGAATACTAGCACCATCTCTAAAGAGGTTGGTTATAACGGCCTGCGACAGTCTGGAGTCCATCCCATTTACGGAGGGGATAGAATACAGCAGTCTCGAAACCTTGACAATCAGGGAATGCAACATAACGTCCATTCCAATTTCACAGGGCTTGCCATCCCTTCGTGTACTAAAGATTGTGCGTTGTCCTAAACTGAGGTATTTACCTGAGGGGCTACTAGCACCGTCTCTAAAGAAGTTGGATATAACGGCCTGCGACAGTCTGGAGTCCATCCCATTTACGGAGGGGATAGAATACAGCAGTCTTGAAACCTTGACAATCAGGGAATGCAACATAACGTCCATTCCAATTTCACAGGGCTTGCCATCCCTTCGTGTACTAGAGATTTTGCATTGTCCTAAACTATCGAGCCTCCCAAGTGGACTAAACTGCTGCACCTCTCTTGAGAAGTTGGAGATAATAAACTGCCCCAGTCTGGAGACAATTCCATATTTAGCATCCCTCACCAGCTTGAAGATATTGAACATCGGTGCCTTCTGCGAGCTCGATTCATTCCCTGCTATACCGGTCATGCCACAACTTGAGGAACTAAGGCTGGAAGGCTGGCCTAAGCTCAACTCTCTGCCTGAACAGATTCAACACTTCACTTCTCTCACATCTTTGACTATATGCTCCTTCGACCATGTGGAGGAAATTCCAGACTGGTTTGGAAACTTCTCGTCTCTTGACTGCCTCACCATAGAGAGTTGCCAAAATCTAAAGAAACTTCCTTCACTCCAAGCTATGCAATGCCTCACAAAATTAAGGTTCCTGTTCATCTATGCCTCTCCTATAATTGAAAGATGCAGGAAGGGTGGCCCAGAGTGGCCCAAGATTTCTCATATTCCAGATGTCCGTCTAGAAATGCATATGTATGAAGCTATGTATCGAGGCAAGGCAAACTTTTCAAAAATGTTTTCACCATTGTTTGTTGTGTCTTTGACGTCATCCTCCACATCAAGTGTTCTCATTCTGATTCAATTTCTCATGCAGCAAGGTGACGAAATTATTGTTGCAGTTCCTGGTAGTAGTAACATCTTGTATATTCACAAGGAGGCTTTCAGTCAACTGTTCTGTAATAGATGCAAAACAGTTTCCTGGTACTTCAGCTACCTTTCCCCTGAAGATAATACAGGGTCTATCAACACCTTTCTAATATTTGGTTTGGCTGTTCGCAAGTTATTCGAGGAGCACTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPPC-Trs85 TRAPPC9-Trs120

Protein Analysis

1359

Amino Acids

154.53

Weight (kDa)

6.48

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 97 2.6e-19 Rx N-terminal domain
NB-ARC PF00931 175 - 349 8.7e-34 NB-ARC domain
WHD_DRP PF23559 438 - 506 3e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 526 - 840 2e-29 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 646 - 773 6e-33 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 925 - 1057 3.8e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 980 - 1124 3.6e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 1053 - 1174 5.6e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_R13L1-DRL21 PF25019 1156 - 1216 4.5e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16280 AT5G16280
fragaria_vesca FvH4_6g20450 FvH4_6g20450 FvH4_6g20450 FvH4_6g20450
malus_domestica MD12G1041600.v1.1 MD14G1040700.v1.1
prunus_persica Prupe.7G093600_v2.0.a1
pyrus_communis pycom12g03630 pycom14g03450
rosa_chinensis RchiOBHm_Chr3g0476301
rosa_laevigata RLG00000023780
rosa_multiflora Rmu_sc0000114.1_g000012
rosa_roxburghii Rroxscaffold_6G00405410
rosa_rugosa Rorug03G0153400
rosa_samantha Rh3AG204600 Rh3BG236000 Rh3CG230700 Rh3DG230500
rosa_wichuraiana Rw3G018590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1731, 2873
AasI GACNNNNNNGTC 1 cut(s) 1815
AatII GACGTC 1 cut(s) 3824
Acc36I ACCTGC 1 cut(s) 1103
AccB1I GGYRCC 2 cut(s) 843, 3368
AccB7I CCANNNNNTGG 1 cut(s) 2282
AccI GTMKAC 1 cut(s) 2047
AccII CGCG 2 cut(s) 163, 283
AciI CCGC 9 cut(s) 161, 182, 190, 283, 931, 1762, 1950, 2598, 2663
AclWI GGATC 4 cut(s) 641, 737, 2353, 2360
AcoI YGGCCR 2 cut(s) 1859, 2284
AcsI RAATTY 6 cut(s) 300, 1435, 2153, 2186, 2227, 3531
AcuI CTGAAG 4 cut(s) 2552, 2774, 3967, 4020
AcyI GRCGYC 2 cut(s) 268, 3821
AfaI GTAC 6 cut(s) 424, 2121, 2604, 3006, 3216, 3980
AfiI CCNNNNNNNGG 7 cut(s) 410, 2149, 2282, 2908, 3118, 3313, 3526
AflIII ACRYGT 3 cut(s) 1522, 1996, 2322
AgeI ACCGGT 2 cut(s) 2605, 3403
AhdI GACNNNNNGTC 1 cut(s) 2323
AhlI ACTAGT 1 cut(s) 1123
AjiI CACGTC 1 cut(s) 2501
AjnI CCWGG 3 cut(s) 27, 3898, 3974
Alw21I GWGCWC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
Alw26I GTCTC 8 cut(s) 1455, 1763, 1801, 2220, 2936, 3069, 3311, 3564
AlwI GGATC 4 cut(s) 641, 737, 2353, 2360
AlwNI CAGNNNCTG 3 cut(s) 2575, 2797, 3899
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 9 cut(s) 607, 1619, 1859, 2284, 2877, 3087, 3443, 3694, 3704
ApeKI GCWGC 9 cut(s) 187, 755, 2015, 2094, 2097, 2100, 2253, 3270, 3868
ApoI RAATTY 6 cut(s) 300, 1435, 2153, 2186, 2227, 3531
AsiGI ACCGGT 2 cut(s) 2605, 3403
Asp700I GAANNNNTTC 2 cut(s) 2130, 3471
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 285, 1619, 3695, 3705
AsuC2I CCSGG 1 cut(s) 2087
AsuII TTCGAA 1 cut(s) 1326
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 285
AxyI CCTNAGG 2 cut(s) 2835, 3045
BalI TGGCCA 2 cut(s) 1861, 2286
BanI GGYRCC 2 cut(s) 843, 3368
BanII GRGCYC 2 cut(s) 264, 3384
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
BbvI GCAGC 9 cut(s) 199, 742, 2027, 2106, 2109, 2112, 2240, 3257, 3880
BceAI ACGGC 2 cut(s) 2892, 3102
BcgI CGANNNNNNTGC 4 cut(s) 653, 687, 4042, 4076
BciT130I CCWGG 3 cut(s) 29, 3900, 3976
BclI TGATCA 3 cut(s) 484, 873, 1797
BcnI CCSGG 1 cut(s) 2087
BcoDI GTCTC 8 cut(s) 1455, 1763, 1801, 2220, 2936, 3069, 3311, 3564
BcuI ACTAGT 1 cut(s) 1123
BfmI CTRYAG 3 cut(s) 438, 756, 1736
BfuAI ACCTGC 1 cut(s) 1103
BglII AGATCT 1 cut(s) 2303
Bme1390I CCNGG 4 cut(s) 29, 2087, 3900, 3976
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 2323
BmeT110I CYCGRG 1 cut(s) 611
BmgBI CACGTC 1 cut(s) 2501
BmgT120I GGNCC 4 cut(s) 285, 1619, 3695, 3705
BmiI GGNNCC 4 cut(s) 287, 845, 3370, 3647
BmrFI CCNGG 4 cut(s) 29, 2087, 3900, 3976
BmrI ACTGGG 2 cut(s) 1955, 3303
BmsI GCATC 9 cut(s) 139, 214, 433, 956, 1140, 1482, 3344, 3671, 3950
BmuI ACTGGG 2 cut(s) 1955, 3303
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 4 cut(s) 401, 2912, 3122, 3335
Bpu10I CCTNAGC 1 cut(s) 3447
Bpu14I TTCGAA 1 cut(s) 1326
BpuEI CTTGAG 6 cut(s) 290, 1344, 1687, 2525, 3302, 3440
BpuMI CCSGG 1 cut(s) 2087
BsaAI YACGTR 2 cut(s) 146, 2051
BsaHI GRCGYC 2 cut(s) 268, 3821
BsaI GGTCTC 1 cut(s) 1763
BsaJI CCNNGG 5 cut(s) 27, 610, 1380, 1856, 2764
BsaWI WCCGGW 3 cut(s) 581, 2605, 3403
BsaXI ACNNNNNCTCC 4 cut(s) 509, 539, 2530, 2560
Bsc4I CCNNNNNNNGG 7 cut(s) 410, 2149, 2282, 2908, 3118, 3313, 3526
Bse118I RCCGGY 2 cut(s) 2605, 3403
Bse1I ACTGG 8 cut(s) 51, 1090, 1434, 1640, 1950, 2127, 3309, 3545
Bse21I CCTNAGG 2 cut(s) 2835, 3045
Bse3DI GCAATG 2 cut(s) 428, 3632
BseBI CCWGG 3 cut(s) 29, 3900, 3976
BseDI CCNNGG 5 cut(s) 27, 610, 1380, 1856, 2764
BseLI CCNNNNNNNGG 7 cut(s) 410, 2149, 2282, 2908, 3118, 3313, 3526
BseMI GCAATG 2 cut(s) 428, 3632
BseMII CTCAG 7 cut(s) 85, 2405, 2567, 2813, 2826, 3023, 3036
BseNI ACTGG 8 cut(s) 51, 1090, 1434, 1640, 1950, 2127, 3309, 3545
BseRI GAGGAG 4 cut(s) 530, 2522, 2682, 4079
BseXI GCAGC 9 cut(s) 199, 742, 2027, 2106, 2109, 2112, 2240, 3257, 3880
BseYI CCCAGC 1 cut(s) 1865
BsgI GTGCAG 3 cut(s) 206, 1131, 3256
Bsh1236I CGCG 2 cut(s) 163, 283
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 9 cut(s) 609, 1621, 1861, 2286, 2879, 3089, 3445, 3696, 3706
BshNI GGYRCC 2 cut(s) 843, 3368
BshTI ACCGGT 2 cut(s) 2605, 3403
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 7 cut(s) 60, 265, 582, 2086, 2606, 2684, 3404
BsiWI CGTACG 1 cut(s) 422
BslFI GGGAC 3 cut(s) 295, 1803, 2258
BslI CCNNNNNNNGG 7 cut(s) 410, 2149, 2282, 2908, 3118, 3313, 3526
BsmAI GTCTC 8 cut(s) 1455, 1763, 1801, 2220, 2936, 3069, 3311, 3564
BsmBI CGTCTC 2 cut(s) 3069, 3564
BsmFI GGGAC 3 cut(s) 295, 1803, 2258
BsmI GAATGC 2 cut(s) 2960, 3170
BsnI GGCC 9 cut(s) 609, 1621, 1861, 2286, 2879, 3089, 3445, 3696, 3706
Bso31I GGTCTC 1 cut(s) 1763
BsoBI CYCGRG 1 cut(s) 611
Bsp119I TTCGAA 1 cut(s) 1326
Bsp1286I GDGCHC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
Bsp19I CCATGG 2 cut(s) 1856, 2764
BspACI CCGC 9 cut(s) 161, 182, 190, 283, 931, 1762, 1950, 2598, 2663
BspANI GGCC 9 cut(s) 609, 1621, 1861, 2286, 2879, 3089, 3445, 3696, 3706
BspCNI CTCAG 7 cut(s) 84, 2404, 2568, 2814, 2827, 3024, 3037
BspFNI CGCG 2 cut(s) 163, 283
BspHI TCATGA 2 cut(s) 220, 643
BspLI GGNNCC 4 cut(s) 287, 845, 3370, 3647
BspMAI CTGCAG 2 cut(s) 442, 760
BspMI ACCTGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 641, 737, 2353, 2360
BspQI GCTCTTC 2 cut(s) 252, 654
BspT104I TTCGAA 1 cut(s) 1326
BspT107I GGYRCC 2 cut(s) 843, 3368
BspTNI GGTCTC 1 cut(s) 1763
BsrDI GCAATG 2 cut(s) 428, 3632
BsrFI RCCGGY 2 cut(s) 2605, 3403
BsrI ACTGG 8 cut(s) 51, 1090, 1434, 1640, 1950, 2127, 3309, 3545
BssAI RCCGGY 2 cut(s) 2605, 3403
BssECI CCNNGG 5 cut(s) 27, 610, 1380, 1856, 2764
BssNAI GTATAC 1 cut(s) 2048
BssNI GRCGYC 2 cut(s) 268, 3821
BssT1I CCWWGG 3 cut(s) 1380, 1856, 2764
Bst1107I GTATAC 1 cut(s) 2048
Bst2UI CCWGG 3 cut(s) 29, 3900, 3976
Bst4CI ACNGT 9 cut(s) 625, 1912, 2360, 2813, 2888, 3063, 3098, 3948, 3970
Bst6I CTCTTC 9 cut(s) 252, 654, 861, 1215, 2229, 2313, 2414, 2571, 2793
BstACI GRCGYC 2 cut(s) 268, 3821
BstBAI YACGTR 2 cut(s) 146, 2051
BstBI TTCGAA 1 cut(s) 1326
BstDSI CCRYGG 2 cut(s) 1856, 2764
BstFNI CGCG 2 cut(s) 163, 283
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 8 cut(s) 1455, 1763, 1801, 2220, 2936, 3069, 3311, 3564
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 4 cut(s) 56, 224, 2024, 2100
BstNI CCWGG 3 cut(s) 29, 3900, 3976
BstNSI RCATGY 2 cut(s) 2000, 2326
BstSCI CCNGG 4 cut(s) 27, 2085, 3898, 3974
BstSFI CTRYAG 3 cut(s) 438, 756, 1736
BstUI CGCG 2 cut(s) 163, 283
BstV1I GCAGC 9 cut(s) 199, 742, 2027, 2106, 2109, 2112, 2240, 3257, 3880
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 3 cut(s) 729, 2303, 2345
BstXI CCANNNNNNTGG 2 cut(s) 2230, 2771
BstYI RGATCY 3 cut(s) 729, 2303, 2345
BstZ17I GTATAC 1 cut(s) 2048
Bsu36I CCTNAGG 2 cut(s) 2835, 3045
BsuRI GGCC 9 cut(s) 609, 1621, 1861, 2286, 2879, 3089, 3445, 3696, 3706
BtgI CCRYGG 2 cut(s) 1856, 2764
BtrI CACGTC 1 cut(s) 2501
BtsI GCAGTG 2 cut(s) 2795, 4069
BtsIMutI CAGTG 4 cut(s) 369, 1083, 2795, 4069
BveI ACCTGC 1 cut(s) 1103
CaiI CAGNNNCTG 3 cut(s) 2575, 2797, 3899
CciI TCATGA 2 cut(s) 220, 643
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 2 cut(s) 2605, 3403
Cfr13I GGNCC 4 cut(s) 285, 1619, 3695, 3705
CseI GACGC 1 cut(s) 257
Csp6I GTAC 6 cut(s) 423, 2120, 2603, 3005, 3215, 3979
CspAI ACCGGT 2 cut(s) 2605, 3403
CspCI CAANNNNNGTGG 4 cut(s) 2016, 2051, 2457, 2492
CviQI GTAC 6 cut(s) 423, 2120, 2603, 3005, 3215, 3979
DraI TTTAAA 3 cut(s) 745, 1242, 1278
DrdI GACNNNNNNGTC 1 cut(s) 1815
DriI GACNNNNNGTC 1 cut(s) 2323
DseDI GACNNNNNNGTC 1 cut(s) 1815
EaeI YGGCCR 2 cut(s) 1859, 2284
Eam1104I CTCTTC 9 cut(s) 252, 654, 861, 1215, 2229, 2313, 2414, 2571, 2793
Eam1105I GACNNNNNGTC 1 cut(s) 2323
EarI CTCTTC 9 cut(s) 252, 654, 861, 1215, 2229, 2313, 2414, 2571, 2793
Ecl136II GAGCTC 2 cut(s) 262, 3382
Eco130I CCWWGG 3 cut(s) 1380, 1856, 2764
Eco147I AGGCCT 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 264, 3384
Eco31I GGTCTC 1 cut(s) 1763
Eco32I GATATC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 2 cut(s) 262, 3382
Eco57I CTGAAG 4 cut(s) 2552, 2774, 3967, 4020
Eco81I CCTNAGG 2 cut(s) 2835, 3045
Eco88I CYCGRG 1 cut(s) 611
EcoICRI GAGCTC 2 cut(s) 262, 3382
EcoRI GAATTC 2 cut(s) 300, 2153
EcoRII CCWGG 3 cut(s) 27, 3898, 3974
EcoRV GATATC 1 cut(s) 818
EcoT14I CCWWGG 3 cut(s) 1380, 1856, 2764
EcoT22I ATGCAT 1 cut(s) 3747
EcoT38I GRGCYC 2 cut(s) 264, 3384
ErhI CCWWGG 3 cut(s) 1380, 1856, 2764
Esp3I CGTCTC 2 cut(s) 3069, 3564
FalI AAGNNNNNCTT 4 cut(s) 454, 486, 3764, 3796
FaqI GGGAC 3 cut(s) 295, 1803, 2258
FauI CCCGC 2 cut(s) 938, 2656
FauNDI CATATG 1 cut(s) 3747
FbaI TGATCA 3 cut(s) 484, 873, 1797
FblI GTMKAC 1 cut(s) 2047
FriOI GRGCYC 2 cut(s) 264, 3384
GlaI GCGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 1869
GsuI CTGGAG 4 cut(s) 401, 2912, 3122, 3335
HaeIII GGCC 9 cut(s) 609, 1621, 1861, 2286, 2879, 3089, 3445, 3696, 3706
HapII CCGG 7 cut(s) 60, 265, 582, 2086, 2606, 2684, 3404
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 2 cut(s) 268, 3821
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 4 cut(s) 2538, 2674, 2748, 3944
HindII GTYRAC 4 cut(s) 2538, 2674, 2748, 3944
HindIII AAGCTT 5 cut(s) 135, 203, 1585, 1724, 2059
HpaI GTTAAC 3 cut(s) 2538, 2674, 2748
HpaII CCGG 7 cut(s) 60, 265, 582, 2086, 2606, 2684, 3404
Hpy99I CGWCG 1 cut(s) 342
HpyCH4III ACNGT 9 cut(s) 625, 1912, 2360, 2813, 2888, 3063, 3098, 3948, 3970
HpyCH4IV ACGT 7 cut(s) 145, 1522, 2050, 2500, 2966, 3176, 3821
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 224, 2024, 2100
HpySE526I ACGT 7 cut(s) 145, 1522, 2050, 2500, 2966, 3176, 3821
Hsp92I GRCGYC 2 cut(s) 268, 3821
HspAI GCGC 1 cut(s) 281
Ksp22I TGATCA 3 cut(s) 484, 873, 1797
KspAI GTTAAC 3 cut(s) 2538, 2674, 2748
LguI GCTCTTC 2 cut(s) 252, 654
LmnI GCTCC 7 cut(s) 267, 406, 2509, 2551, 2764, 3515, 4066
Lsp1109I GCAGC 9 cut(s) 199, 742, 2027, 2106, 2109, 2112, 2240, 3257, 3880
LweI GCATC 9 cut(s) 139, 214, 433, 956, 1140, 1482, 3344, 3671, 3950
MaeII ACGT 7 cut(s) 145, 1522, 2050, 2500, 2966, 3176, 3821
MfeI CAATTG 5 cut(s) 877, 963, 1647, 1961, 4075
MflI RGATCY 3 cut(s) 729, 2303, 2345
MhlI GDGCHC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
MlsI TGGCCA 2 cut(s) 1861, 2286
MluNI TGGCCA 2 cut(s) 1861, 2286
MlyI GAGTC 4 cut(s) 1611, 2280, 2903, 3113
MmeI TCCRAC 4 cut(s) 320, 817, 3057, 3270
Mox20I TGGCCA 2 cut(s) 1861, 2286
Mph1103I ATGCAT 1 cut(s) 3747
MroXI GAANNNNTTC 2 cut(s) 2130, 3471
MscI TGGCCA 2 cut(s) 1861, 2286
MslI CAYNNNNRTG 1 cut(s) 3750
Msp20I TGGCCA 2 cut(s) 1861, 2286
MspA1I CMGCKG 2 cut(s) 190, 1865
MspI CCGG 7 cut(s) 60, 265, 582, 2086, 2606, 2684, 3404
MspR9I CCNGG 4 cut(s) 29, 2087, 3900, 3976
MunI CAATTG 5 cut(s) 877, 963, 1647, 1961, 4075
Mva1269I GAATGC 2 cut(s) 2960, 3170
MvaI CCWGG 3 cut(s) 29, 3900, 3976
MvnI CGCG 2 cut(s) 163, 283
MwoI GCNNNNNNNGC 4 cut(s) 56, 224, 2024, 2100
NciI CCSGG 1 cut(s) 2087
NcoI CCATGG 2 cut(s) 1856, 2764
NdeI CATATG 1 cut(s) 3747
NlaIV GGNNCC 4 cut(s) 287, 845, 3370, 3647
NmuCI GTSAC 5 cut(s) 535, 922, 1266, 2528, 3875
NsiI ATGCAT 1 cut(s) 3747
NspI RCATGY 2 cut(s) 2000, 2326
NspV TTCGAA 1 cut(s) 1326
PagI TCATGA 2 cut(s) 220, 643
PceI AGGCCT 1 cut(s) 609
PciI ACATGT 2 cut(s) 1996, 2322
PciSI GCTCTTC 2 cut(s) 252, 654
PctI GAATGC 2 cut(s) 2960, 3170
PdmI GAANNNNTTC 2 cut(s) 2130, 3471
Pfl23II CGTACG 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 2282
PinAI ACCGGT 2 cut(s) 2605, 3403
Ple19I CGATCG 1 cut(s) 673
PleI GAGTC 4 cut(s) 1610, 2279, 2902, 3112
PpsI GAGTC 4 cut(s) 1610, 2279, 2902, 3112
Ppu21I YACGTR 2 cut(s) 146, 2051
PscI ACATGT 2 cut(s) 1996, 2322
PsiI TTATAA 2 cut(s) 1731, 2873
Psp124BI GAGCTC 2 cut(s) 264, 3384
Psp6I CCWGG 3 cut(s) 27, 3898, 3974
PspFI CCCAGC 1 cut(s) 1865
PspGI CCWGG 3 cut(s) 27, 3898, 3974
PspLI CGTACG 1 cut(s) 422
PspN4I GGNNCC 4 cut(s) 287, 845, 3370, 3647
PspPI GGNCC 4 cut(s) 285, 1619, 3695, 3705
PstI CTGCAG 2 cut(s) 442, 760
PstNI CAGNNNCTG 3 cut(s) 2575, 2797, 3899
PsuI RGATCY 3 cut(s) 729, 2303, 2345
PvuI CGATCG 1 cut(s) 673
PvuII CAGCTG 1 cut(s) 1865
RsaI GTAC 6 cut(s) 424, 2121, 2604, 3006, 3216, 3980
RsaNI GTAC 6 cut(s) 423, 2120, 2603, 3005, 3215, 3979
RseI CAYNNNNRTG 1 cut(s) 3750
SacI GAGCTC 2 cut(s) 264, 3384
SapI GCTCTTC 2 cut(s) 252, 654
Sau96I GGNCC 4 cut(s) 285, 1619, 3695, 3705
SchI GAGTC 4 cut(s) 1611, 2280, 2903, 3113
ScrFI CCNGG 4 cut(s) 29, 2087, 3900, 3976
SduI GDGCHC 6 cut(s) 264, 666, 1060, 2548, 3384, 4071
SfaNI GCATC 9 cut(s) 139, 214, 433, 956, 1140, 1482, 3344, 3671, 3950
SfcI CTRYAG 3 cut(s) 438, 756, 1736
SfuI TTCGAA 1 cut(s) 1326
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 3750
SmlI CTYRAG 6 cut(s) 305, 1359, 1666, 2504, 3281, 3419
SmoI CTYRAG 6 cut(s) 305, 1359, 1666, 2504, 3281, 3419
SpeI ACTAGT 1 cut(s) 1123
SseBI AGGCCT 1 cut(s) 609
SsiI CCGC 9 cut(s) 161, 182, 190, 283, 931, 1762, 1950, 2598, 2663
SspI AATATT 2 cut(s) 1415, 4035
SstI GAGCTC 2 cut(s) 264, 3384
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 4 cut(s) 27, 2085, 3898, 3974
StyI CCWWGG 3 cut(s) 1380, 1856, 2764
TaaI ACNGT 9 cut(s) 625, 1912, 2360, 2813, 2888, 3063, 3098, 3948, 3970
TaiI ACGT 7 cut(s) 148, 1525, 2053, 2503, 2969, 3179, 3824
TatI WGTACW 3 cut(s) 2119, 3004, 3214
TauI GCSGC 1 cut(s) 1953
TscAI CASTG 4 cut(s) 376, 1090, 2802, 4076
TseFI GTSAC 5 cut(s) 535, 922, 1266, 2528, 3875
TseI GCWGC 9 cut(s) 187, 755, 2015, 2094, 2097, 2100, 2253, 3270, 3868
Tsp45I GTSAC 5 cut(s) 535, 922, 1266, 2528, 3875
TspGWI ACGGA 4 cut(s) 367, 2924, 3134, 3722
TspRI CASTG 4 cut(s) 376, 1090, 2802, 4076
Van91I CCANNNNNTGG 1 cut(s) 2282
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 6 cut(s) 300, 1435, 2153, 2186, 2227, 3531
XbaI TCTAGA 2 cut(s) 2653, 3736
XceI RCATGY 2 cut(s) 2000, 2326
XmiI GTMKAC 1 cut(s) 2047
XmnI GAANNNNTTC 2 cut(s) 2130, 3471
ZraI GACGTC 1 cut(s) 3822
Zsp2I ATGCAT 1 cut(s) 3747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.