Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016052

Physical Location & Seq

Genomic Coordinates Reverse (-)

14576892 .. 14580668

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGTTGAGCTTCAAAAGCTTATTGTCCAAAAGGACCAAAGCCATAACGAAAAAGAAGAAGAACAAGAGCAGAAACAAGATCAGAAGCAAAACTGTTCCCACAAAACAAAACCCCATTTGCGAAAAATGCCCCGACGAAGAAGAGATGGAGGAAGCAGAAGATGGCGATGAGGTTGAAGAAGGGTTCAATCTTAAAGCCTCTGCCCCATCACACACACATGGTGTCAAGCCACTGGGCAATCTCTACCTCAATCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAATCTCCAAACCCTTACAGATGAGCTTGTTCTTGAGATTCTAGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCGAGTGTGAGCAAGTCTTTTTATATCTTTGCAAATCATGAGCCCCTTTGGAGGAACCTTGTGTTGGAAAATCTGAATGGTAGGCTTTTGTATAATTGCACTTGGAAATCTACTTACATTGCTGCTCATTACCCTTCATTTGATGTGTCGAATGTCAGTGTTTCTGGTTTGAGAGTGAGAGACTTTTATTCGGATTATCTGTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCTGAATGGCTTGAGAGAGATAACATAATACGGAGAAGGGGCATTTCGGTTGAGGAGTTCATTTCCGATTTTGAGGAACCGAATAAGCCTGTGCTCTTGGAAGGGTGTATGGATAATTGGGTTGCATTAGAGAAATGGGATAGAGATTATTTGGTTAAACTGTGTGGTGATGTGCAATTTGCAGCTGGGCCAGTGGAGATGAATCTTGAGGATTATTTTAGATATGCTGATCAAGCGAGGGAAGAGAGGCCATTGTACGTTTTTGACCCAAAGTTTGGAGAAAAAGTTGCAAGGTTGGGTTCGGAGTATGAAGTTCCTGTGTACTTTAGGGAGGACTTGTTTAATGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGGTGCTGTTTCCTCCTGATGTTGTTCCTCCAGGGGTGCATCCCAGTCCAGATGGTGCTGAGGTGGCATGCCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCCACAAAGACTTGGAAAAGGAAACCTATCGAGTGCATTTGTAAGGCTGGGGAGGTTCTTTTTGTACCTAATGGATGGTGGCATTTGGTGTTCAACTTGGAGGAATCGATTGCCATTACGCAGAATTATGCTAGCAGGAGTAATTTGTTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGGACGAGAGATCGGGTGAACTTGTATGATAAGTTTAGAAAGGCTATTGAGACTTCTTTACCGGGAACAATTGATAAGTTGTTGCAGAAAGCAGAAGAGAAGAAGGCCCAACAGAGTAAACCCTCCTTCTGGGATACAGTGACAGATTCAAAAGCTGGTGCTTTCAAGTTCTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0010029 GO:0010030 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0032259 GO:0034969 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0043985 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1900140 GO:1901363 GO:1901564 GO:1990837 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 F-box F-box-like

Protein Analysis

520

Amino Acids

59.03

Weight (kDa)

6.32

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	103 - 143	3.6e-06	F-box-like
Cupin_8	PF13621	219 - 439	4e-21	Cupin-like domain
JmjC	PF02373	326 - 436	1.2e-12	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06550
fragaria_vesca	FvH4_6g21050 FvH4_6g21050
malus_domestica	MD12G1046300.v1.1
prunus_persica	Prupe.7G089800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477431
rosa_laevigata	RLG00000023722
rosa_roxburghii	Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa	Rorug03G0160700
rosa_samantha	Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana	Rw3G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
AccB1I	GGYRCC	1 cut(s)	1181
AccB7I	CCANNNNNTGG	1 cut(s)	875
AclWI	GGATC	2 cut(s)	1016, 1069
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	857, 923, 1248
AfiI	CCNNNNNNNGG	6 cut(s)	354, 355, 414, 427, 875, 1509
AflII	CTTAAG	1 cut(s)	1349
AjnI	CCWGG	2 cut(s)	253, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	1373
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	7 cut(s)	9, 18, 313, 341, 785, 1040, 1535
AluI	AGCT	7 cut(s)	9, 18, 313, 341, 785, 1040, 1535
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	2 cut(s)	537, 1424
AlwI	GGATC	2 cut(s)	1016, 1069
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	5 cut(s)	788, 848, 962, 1355, 1485
ApeKI	GCWGC	2 cut(s)	485, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AspS9I	GGNCC	5 cut(s)	33, 345, 788, 989, 1486
AsuC2I	CCSGG	2 cut(s)	997, 1443
AsuHPI	GGTGA	2 cut(s)	779, 1408
AsuNHI	GCTAGC	1 cut(s)	1313
AvaII	GGWCC	3 cut(s)	33, 345, 989
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	1131
BbvI	GCAGC	2 cut(s)	472, 794
BccI	CCATC	6 cut(s)	139, 155, 214, 969, 1118, 1251
BciT130I	CCWGG	2 cut(s)	255, 1104
BciVI	GTATCC	1 cut(s)	1507
BclI	TGATCA	2 cut(s)	829, 1053
BcnI	CCSGG	2 cut(s)	997, 1443
BcoDI	GTCTC	2 cut(s)	537, 1424
BfaI	CTAG	2 cut(s)	329, 1314
BfrI	CTTAAG	1 cut(s)	1349
BfuI	GTATCC	1 cut(s)	1507
BisI	GCNGC	2 cut(s)	486, 783
BlsI	GCNGC	2 cut(s)	487, 784
Bme1390I	CCNGG	4 cut(s)	255, 997, 1104, 1443
Bme18I	GGWCC	3 cut(s)	33, 345, 989
BmgT120I	GGNCC	5 cut(s)	33, 345, 788, 989, 1486
BmiI	GGNNCC	6 cut(s)	346, 347, 419, 678, 1006, 1183
BmrFI	CCNGG	4 cut(s)	255, 997, 1104, 1443
BmrI	ACTGGG	2 cut(s)	242, 1110
BmsI	GCATC	1 cut(s)	1120
BmtI	GCTAGC	1 cut(s)	1317
BmuI	ACTGGG	2 cut(s)	242, 1110
BpmI	CTGGAG	1 cut(s)	1086
Bpu10I	CCTNAGC	2 cut(s)	283, 1131
BpuEI	CTTGAG	4 cut(s)	253, 341, 632, 827
BpuMI	CCSGG	2 cut(s)	997, 1443
Bsa29I	ATCGAT	1 cut(s)	1289
BsaJI	CCNNGG	1 cut(s)	1103
BsaXI	ACNNNNNCTCC	4 cut(s)	870, 900, 923, 953
Bsc4I	CCNNNNNNNGG	6 cut(s)	354, 355, 414, 427, 875, 1509
Bse1I	ACTGG	4 cut(s)	237, 283, 791, 1116
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	255, 1104
BseCI	ATCGAT	1 cut(s)	1289
BseDI	CCNNGG	1 cut(s)	1103
BseGI	GGATG	2 cut(s)	1111, 1262
BseLI	CCNNNNNNNGG	6 cut(s)	354, 355, 414, 427, 875, 1509
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	1122
BseNI	ACTGG	4 cut(s)	237, 283, 791, 1116
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	2 cut(s)	472, 794
BseYI	CCCAGC	3 cut(s)	341, 785, 1229
BshFI	GGCC	5 cut(s)	790, 850, 964, 1357, 1487
BshNI	GGYRCC	1 cut(s)	1181
BshVI	ATCGAT	1 cut(s)	1289
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	996, 1442
BslFI	GGGAC	2 cut(s)	358, 1396
BslI	CCNNNNNNNGG	6 cut(s)	354, 355, 414, 427, 875, 1509
BsmAI	GTCTC	2 cut(s)	537, 1424
BsmFI	GGGAC	2 cut(s)	358, 1396
BsmI	GAATGC	1 cut(s)	1051
BsnI	GGCC	5 cut(s)	790, 850, 964, 1357, 1487
Bsp1286I	GDGCHC	2 cut(s)	408, 696
Bsp143I	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
BspANI	GGCC	5 cut(s)	790, 850, 964, 1357, 1487
BspCNI	CTCAG	1 cut(s)	1123
BspDI	ATCGAT	1 cut(s)	1289
BspHI	TCATGA	2 cut(s)	400, 1167
BspLI	GGNNCC	6 cut(s)	346, 347, 419, 678, 1006, 1183
BspOI	GCTAGC	1 cut(s)	1317
BspPI	GGATC	2 cut(s)	1016, 1069
BspT107I	GGYRCC	1 cut(s)	1181
BspTI	CTTAAG	1 cut(s)	1349
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	4 cut(s)	237, 283, 791, 1116
BssECI	CCNNGG	1 cut(s)	1103
BssMI	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
Bst2UI	CCWGG	2 cut(s)	255, 1104
Bst4CI	ACNGT	3 cut(s)	94, 762, 1519
Bst6I	CTCTTC	3 cut(s)	135, 837, 1470
BstAFI	CTTAAG	1 cut(s)	1349
BstC8I	GCNNGC	3 cut(s)	1141, 1315, 1366
BstDEI	CTNAG	2 cut(s)	283, 1131
BstF5I	GGATG	2 cut(s)	1111, 1262
BstKTI	GATC	6 cut(s)	81, 832, 1024, 1056, 1064, 1393
BstMAI	GTCTC	2 cut(s)	537, 1424
BstMBI	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 126, 338, 833, 1046, 1136
BstNI	CCWGG	2 cut(s)	255, 1104
BstNSI	RCATGY	1 cut(s)	1143
BstSCI	CCNGG	4 cut(s)	253, 995, 1102, 1441
BstV1I	GCAGC	2 cut(s)	472, 794
BstXI	CCANNNNNNTGG	1 cut(s)	1372
Bsu15I	ATCGAT	1 cut(s)	1289
BsuI	GTATCC	1 cut(s)	1507
BsuRI	GGCC	5 cut(s)	790, 850, 964, 1357, 1487
BsuTUI	ATCGAT	1 cut(s)	1289
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	1111, 1262
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	6 cut(s)	230, 276, 526, 798, 1056, 1524
Cac8I	GCNNGC	3 cut(s)	1141, 1315, 1366
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	2 cut(s)	400, 1167
Cfr13I	GGNCC	5 cut(s)	33, 345, 788, 989, 1486
ClaI	ATCGAT	1 cut(s)	1289
Csp6I	GTAC	3 cut(s)	856, 922, 1247
CviAII	CATG	4 cut(s)	218, 401, 1140, 1168
CviQI	GTAC	3 cut(s)	856, 922, 1247
DdeI	CTNAG	2 cut(s)	283, 1131
DpnI	GATC	6 cut(s)	80, 831, 1023, 1055, 1063, 1392
DpnII	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	135, 837, 1470
EarI	CTCTTC	3 cut(s)	135, 837, 1470
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	3 cut(s)	33, 345, 989
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	253, 1102
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	4 cut(s)	221, 404, 1143, 1171
FaqI	GGGAC	2 cut(s)	358, 1396
FatI	CATG	4 cut(s)	217, 400, 1139, 1167
FbaI	TGATCA	2 cut(s)	829, 1053
Fnu4HI	GCNGC	2 cut(s)	486, 783
FokI	GGATG	2 cut(s)	1098, 1269
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	486, 783
FspBI	CTAG	2 cut(s)	329, 1314
GluI	GCNGC	2 cut(s)	486, 783
GsaI	CCCAGC	3 cut(s)	345, 789, 1233
GsuI	CTGGAG	1 cut(s)	1086
HaeIII	GGCC	5 cut(s)	790, 850, 964, 1357, 1487
HapII	CCGG	2 cut(s)	996, 1442
Hin1II	CATG	4 cut(s)	221, 404, 1143, 1171
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	4 cut(s)	325, 802, 1286, 1526
HpaII	CCGG	2 cut(s)	996, 1442
HphI	GGTGA	2 cut(s)	779, 1408
Hpy166II	GTNNAC	4 cut(s)	265, 922, 1399, 1499
Hpy188I	TCNGA	5 cut(s)	83, 438, 556, 667, 904
Hpy188III	TCNNGA	9 cut(s)	270, 320, 401, 568, 590, 806, 1088, 1121, 1168
Hpy8I	GTNNAC	4 cut(s)	265, 922, 1399, 1499
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	6 cut(s)	173, 507, 630, 695, 1477, 1516
HpyCH4III	ACNGT	3 cut(s)	94, 762, 1519
HpyCH4IV	ACGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 126, 338, 833, 1046, 1136
HpyF3I	CTNAG	2 cut(s)	283, 1131
HpySE526I	ACGT	1 cut(s)	858
Hsp92II	CATG	4 cut(s)	221, 404, 1143, 1171
KflI	GGGWCCC	1 cut(s)	345
Ksp22I	TGATCA	2 cut(s)	829, 1053
Kzo9I	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
Lsp1109I	GCAGC	2 cut(s)	472, 794
LweI	GCATC	1 cut(s)	1120
MaeI	CTAG	2 cut(s)	329, 1314
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	1 cut(s)	1519
MalI	GATC	6 cut(s)	80, 831, 1023, 1055, 1063, 1392
MboI	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
MboII	GAAGA	9 cut(s)	67, 70, 149, 152, 170, 188, 854, 1487, 1492
MfeI	CAATTG	1 cut(s)	1449
MhlI	GDGCHC	2 cut(s)	408, 696
MluCI	AATT	9 cut(s)	457, 715, 776, 984, 1027, 1155, 1306, 1324, 1449
MmeI	TCCRAC	1 cut(s)	408
MseI	TTAA	4 cut(s)	192, 756, 942, 1350
MslI	CAYNNNNRTG	2 cut(s)	216, 1373
MspA1I	CMGCKG	1 cut(s)	785
MspCI	CTTAAG	1 cut(s)	1349
MspI	CCGG	2 cut(s)	996, 1442
MspR9I	CCNGG	4 cut(s)	255, 997, 1104, 1443
MunI	CAATTG	1 cut(s)	1449
Mva1269I	GAATGC	1 cut(s)	1051
MvaI	CCWGG	2 cut(s)	255, 1104
MwoI	GCNNNNNNNGC	6 cut(s)	15, 126, 338, 833, 1046, 1136
NciI	CCSGG	2 cut(s)	997, 1443
NdeII	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
NheI	GCTAGC	1 cut(s)	1313
NlaIII	CATG	4 cut(s)	221, 404, 1143, 1171
NlaIV	GGNNCC	6 cut(s)	346, 347, 419, 678, 1006, 1183
NmuCI	GTSAC	1 cut(s)	1519
NspI	RCATGY	1 cut(s)	1143
OliI	CACNNNNGTG	1 cut(s)	1373
PaeI	GCATGC	1 cut(s)	1143
PagI	TCATGA	2 cut(s)	400, 1167
PctI	GAATGC	1 cut(s)	1051
PfeI	GAWTC	4 cut(s)	325, 802, 1286, 1526
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	2 cut(s)	487, 784
PpuMI	RGGWCCY	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	983
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	253, 1102
PspFI	CCCAGC	3 cut(s)	341, 785, 1229
PspGI	CCWGG	2 cut(s)	253, 1102
PspN4I	GGNNCC	6 cut(s)	346, 347, 419, 678, 1006, 1183
PspPI	GGNCC	5 cut(s)	33, 345, 788, 989, 1486
PspPPI	RGGWCCY	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	3 cut(s)	857, 923, 1248
RsaNI	GTAC	3 cut(s)	856, 922, 1247
RseI	CAYNNNNRTG	2 cut(s)	216, 1373
SaqAI	TTAA	4 cut(s)	192, 756, 942, 1350
SatI	GCNGC	2 cut(s)	486, 783
Sau3AI	GATC	6 cut(s)	78, 829, 1021, 1053, 1061, 1390
Sau96I	GGNCC	5 cut(s)	33, 345, 788, 989, 1486
ScrFI	CCNGG	4 cut(s)	255, 997, 1104, 1443
SduI	GDGCHC	2 cut(s)	408, 696
SfaNI	GCATC	1 cut(s)	1120
SinI	GGWCC	3 cut(s)	33, 345, 989
SmiMI	CAYNNNNRTG	2 cut(s)	216, 1373
SmlI	CTYRAG	5 cut(s)	268, 320, 611, 806, 1349
SmoI	CTYRAG	5 cut(s)	268, 320, 611, 806, 1349
SphI	GCATGC	1 cut(s)	1143
Sse9I	AATT	9 cut(s)	457, 715, 776, 984, 1027, 1155, 1306, 1324, 1449
SspMI	CTAG	2 cut(s)	329, 1314
StyD4I	CCNGG	4 cut(s)	253, 995, 1102, 1441
TaaI	ACNGT	3 cut(s)	94, 762, 1519
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	3 cut(s)	512, 1212, 1289
TasI	AATT	9 cut(s)	457, 715, 776, 984, 1027, 1155, 1306, 1324, 1449
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	4 cut(s)	325, 802, 1286, 1526
Tru1I	TTAA	4 cut(s)	192, 756, 942, 1350
Tru9I	TTAA	4 cut(s)	192, 756, 942, 1350
TscAI	CASTG	6 cut(s)	237, 283, 526, 798, 1056, 1524
TseFI	GTSAC	1 cut(s)	1519
TseI	GCWGC	2 cut(s)	485, 782
Tsp45I	GTSAC	1 cut(s)	1519
TspDTI	ATGAA	7 cut(s)	489, 611, 649, 815, 924, 1156, 1184
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	6 cut(s)	237, 283, 526, 798, 1056, 1524
Van91I	CCANNNNNTGG	1 cut(s)	875
Vha464I	CTTAAG	1 cut(s)	1349
VpaK11BI	GGWCC	3 cut(s)	33, 345, 989
XceI	RCATGY	1 cut(s)	1143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	972
XspI	CTAG	2 cut(s)	329, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.