Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016052

Physical Location & Seq

Genomic Coordinates Reverse (-)

21585381 .. 21588450

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGTTCAGCTGCAAAAGCTTATTGTCCAAAAGGACCAAAACCATAAAGAAAAAGAAGAAAAACAAGAGCAAAAACAAGATCAGAAGCAAAAATGTTCCCGCAAAACAAAACCCCATTTGCGAAAAATACCAAGAAGAAGAAGAAGAAGAGATAGAGGAAGAAGAAGATAGTGATGAAGTTGAAGAAGGCTTCAATCTTAAAGCCTCTGCTCCATCTCACACACATGGAGTCCAGCCACTGGGCAATCTCTACCTCAACCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAATCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGATTCTGGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCAACTGTGAGCAAATCATTTTATATCTTTGCAAATCATGAGCCCCTTTGGAGGAACCTTGTGTTGGAAAATCTCGGTGGTAGGCTTCTGTATAATGGCTCTTGGAAATCTACTTACACTGCTGCTCATTACCCTTCATTTGATGTGTCGAATATCAGTGTTTCCGGTTTGAGAGTGAGAGACTTTTATTCTGACTATCTCTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCCGAATGGCTTGAGAGAGATAATATAATCCGAAGAAGGGGCATTTCAGTTGAGGAATTCATTTCTGATTTTGAGGAACCGAATAAGCCTGTGCTGTTGGAAGGGTGTATGGACAATTGGGTTGCATCAGAGAAATGGGATAGAGATTATTTGGTTCAACTGTGCGGTGATGTACAGTTTGCAGCTGGGCCGGTGGACATGAAGCTTGGGGACTATTTTAGATATGCTGATCAGGTGAGGGAAGAGAGGCCATTGTACCTTTTTGACCCAAAATTTGGAGAAAAAGTTGCAAGATTGGGTTCGGAGTATGAAGTTCCTGTGTATTTTAGGGAGGACTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGGTATTGTTTCCTCCTGATGTTGTTCCTCCAGGGGTGCATCCCAGTCCAGATGGTGCTGAGGTGGCATGCCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGACTTGGAAAAGGAAACCTATCGAGTGCATTTGTAAAGCTGGGGAGGTGATTTTTGTACCTAATGGATGGTGGCATTTGGTGATCAACTTGGAAGAATCAATTGCCATTACACAGAATTACGCTAGCAGGAGTAATTTGTTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGAACAAGAGATCGGGTGAACTTGTATGAGAAGTTTAGAAATGCTATTGAGGCTTCTTTACCTGGAACTATTGATCATTTGTTGCAAAAAGCAGAAGAGAAGAAGGCCCAACAGACTAAACCCTCCTTCTGGGATACAGTTACAGATTCAAAGGCTGGTGCATTCAAGTTCTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0010029 GO:0010030 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0032259 GO:0034969 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0043985 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1900140 GO:1901363 GO:1901564 GO:1990837 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 F-box F-box-like

Protein Analysis

521

Amino Acids

59.24

Weight (kDa)

5.87

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	105 - 145	3.2e-06	F-box-like
Cupin_8	PF13621	275 - 441	4.1e-16	Cupin-like domain
JmjC	PF02373	328 - 438	2.6e-12	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06550
fragaria_vesca	FvH4_6g21050 FvH4_6g21050
malus_domestica	MD12G1046300.v1.1
prunus_persica	Prupe.7G089800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477431
rosa_laevigata	RLG00000023722
rosa_roxburghii	Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa	Rorug03G0160700
rosa_samantha	Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana	Rw3G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
AccB7I	CCANNNNNTGG	2 cut(s)	238, 881
AciI	CCGC	2 cut(s)	99, 771
AclWI	GGATC	2 cut(s)	1022, 1075
AcsI	RAATTY	2 cut(s)	662, 878
AfaI	GTAC	3 cut(s)	780, 863, 1254
AfiI	CCNNNNNNNGG	8 cut(s)	238, 360, 361, 420, 433, 643, 881, 1515
AflII	CTTAAG	1 cut(s)	1355
AjnI	CCWGG	3 cut(s)	259, 1108, 1447
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AleI	CACNNNNGTG	1 cut(s)	1379
AluBI	AGCT	8 cut(s)	9, 18, 319, 347, 791, 811, 1046, 1235
AluI	AGCT	8 cut(s)	9, 18, 319, 347, 791, 811, 1046, 1235
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	1022, 1075
AlwNI	CAGNNNCTG	2 cut(s)	238, 266
AoxI	GGCC	6 cut(s)	336, 794, 854, 968, 1361, 1491
ApeKI	GCWGC	3 cut(s)	9, 491, 788
ApoI	RAATTY	2 cut(s)	662, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AspS9I	GGNCC	5 cut(s)	33, 351, 794, 995, 1492
AsuC2I	CCSGG	1 cut(s)	1003
AsuHPI	GGTGA	5 cut(s)	785, 853, 1255, 1288, 1414
AsuNHI	GCTAGC	1 cut(s)	1319
AvaII	GGWCC	3 cut(s)	33, 351, 995
BanII	GRGCYC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	2 cut(s)	478, 800
BccI	CCATC	4 cut(s)	220, 975, 1124, 1257
BciT130I	CCWGG	3 cut(s)	261, 1110, 1449
BciVI	GTATCC	1 cut(s)	1513
BclI	TGATCA	4 cut(s)	835, 1059, 1278, 1459
BcnI	CCSGG	1 cut(s)	1003
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	2 cut(s)	1320, 1564
BfrI	CTTAAG	1 cut(s)	1355
BfuI	GTATCC	1 cut(s)	1513
BisI	GCNGC	3 cut(s)	10, 492, 789
BlsI	GCNGC	3 cut(s)	11, 493, 790
Bme1390I	CCNGG	4 cut(s)	261, 1003, 1110, 1449
Bme18I	GGWCC	3 cut(s)	33, 351, 995
BmgT120I	GGNCC	5 cut(s)	33, 351, 794, 995, 1492
BmiI	GGNNCC	5 cut(s)	352, 353, 425, 684, 1012
BmrFI	CCNGG	4 cut(s)	261, 1003, 1110, 1449
BmrI	ACTGGG	2 cut(s)	248, 1116
BmsI	GCATC	2 cut(s)	740, 1126
BmtI	GCTAGC	1 cut(s)	1323
BmuI	ACTGGG	2 cut(s)	248, 1116
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	289, 1137
BpuEI	CTTGAG	3 cut(s)	259, 347, 638
BpuMI	CCSGG	1 cut(s)	1003
BsaJI	CCNNGG	2 cut(s)	259, 1109
BsaWI	WCCGGW	1 cut(s)	533
BsaXI	ACNNNNNCTCC	4 cut(s)	876, 906, 929, 959
Bsc4I	CCNNNNNNNGG	8 cut(s)	238, 360, 361, 420, 433, 643, 881, 1515
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	3 cut(s)	243, 289, 1122
BseBI	CCWGG	3 cut(s)	261, 1110, 1449
BseDI	CCNNGG	2 cut(s)	259, 1109
BseGI	GGATG	2 cut(s)	1117, 1268
BseLI	CCNNNNNNNGG	8 cut(s)	238, 360, 361, 420, 433, 643, 881, 1515
BseMII	CTCAG	1 cut(s)	1128
BseNI	ACTGG	3 cut(s)	243, 289, 1122
BseXI	GCAGC	2 cut(s)	478, 800
BseYI	CCCAGC	3 cut(s)	347, 791, 1235
BshFI	GGCC	6 cut(s)	338, 796, 856, 970, 1363, 1493
BsiSI	CCGG	3 cut(s)	534, 797, 1002
BslFI	GGGAC	2 cut(s)	364, 830
BslI	CCNNNNNNNGG	8 cut(s)	238, 360, 361, 420, 433, 643, 881, 1515
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	2 cut(s)	364, 830
BsmI	GAATGC	2 cut(s)	1057, 1547
BsnI	GGCC	6 cut(s)	338, 796, 856, 970, 1363, 1493
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
BspACI	CCGC	2 cut(s)	99, 771
BspANI	GGCC	6 cut(s)	338, 796, 856, 970, 1363, 1493
BspCNI	CTCAG	1 cut(s)	1129
BspHI	TCATGA	2 cut(s)	406, 1173
BspLI	GGNNCC	5 cut(s)	352, 353, 425, 684, 1012
BspOI	GCTAGC	1 cut(s)	1323
BspPI	GGATC	2 cut(s)	1022, 1075
BspTI	CTTAAG	1 cut(s)	1355
BsrFI	RCCGGY	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	243, 289, 1122
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	2 cut(s)	259, 1109
BssMI	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
Bst2UI	CCWGG	3 cut(s)	261, 1110, 1449
Bst4CI	ACNGT	4 cut(s)	376, 768, 783, 1525
Bst6I	CTCTTC	4 cut(s)	141, 575, 843, 1476
BstAFI	CTTAAG	1 cut(s)	1355
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	3 cut(s)	1147, 1321, 1372
BstDEI	CTNAG	2 cut(s)	289, 1137
BstF5I	GGATG	2 cut(s)	1117, 1268
BstKTI	GATC	8 cut(s)	81, 838, 1030, 1062, 1070, 1281, 1399, 1462
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 344, 1052, 1142, 1436
BstNI	CCWGG	3 cut(s)	261, 1110, 1449
BstNSI	RCATGY	1 cut(s)	1149
BstSCI	CCNGG	4 cut(s)	259, 1001, 1108, 1447
BstV1I	GCAGC	2 cut(s)	478, 800
BstXI	CCANNNNNNTGG	1 cut(s)	1378
BsuI	GTATCC	1 cut(s)	1513
BsuRI	GGCC	6 cut(s)	338, 796, 856, 970, 1363, 1493
BtsCI	GGATG	2 cut(s)	1117, 1268
BtsI	GCAGTG	2 cut(s)	486, 1062
BtsIMutI	CAGTG	5 cut(s)	236, 282, 486, 532, 1062
Cac8I	GCNNGC	3 cut(s)	1147, 1321, 1372
CaiI	CAGNNNCTG	2 cut(s)	238, 266
CciI	TCATGA	2 cut(s)	406, 1173
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	5 cut(s)	33, 351, 794, 995, 1492
Csp6I	GTAC	3 cut(s)	779, 862, 1253
CviAII	CATG	5 cut(s)	224, 407, 805, 1146, 1174
CviQI	GTAC	3 cut(s)	779, 862, 1253
DdeI	CTNAG	2 cut(s)	289, 1137
DpnI	GATC	8 cut(s)	80, 837, 1029, 1061, 1069, 1280, 1398, 1461
DpnII	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
Eam1104I	CTCTTC	4 cut(s)	141, 575, 843, 1476
EarI	CTCTTC	4 cut(s)	141, 575, 843, 1476
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	3 cut(s)	33, 351, 995
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	3 cut(s)	259, 1108, 1447
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	5 cut(s)	227, 410, 808, 1149, 1177
FaqI	GGGAC	2 cut(s)	364, 830
FatI	CATG	5 cut(s)	223, 406, 804, 1145, 1173
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	4 cut(s)	835, 1059, 1278, 1459
Fnu4HI	GCNGC	3 cut(s)	10, 492, 789
FokI	GGATG	2 cut(s)	1104, 1275
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	10, 492, 789
FspBI	CTAG	2 cut(s)	1320, 1564
GluI	GCNGC	3 cut(s)	10, 492, 789
GsaI	CCCAGC	3 cut(s)	351, 795, 1239
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	6 cut(s)	338, 796, 856, 970, 1363, 1493
HapII	CCGG	3 cut(s)	534, 797, 1002
Hin1II	CATG	5 cut(s)	227, 410, 808, 1149, 1177
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	16, 809
HinfI	GANTC	4 cut(s)	228, 331, 1292, 1532
HpaII	CCGG	3 cut(s)	534, 797, 1002
HphI	GGTGA	5 cut(s)	785, 853, 1255, 1288, 1414
Hpy166II	GTNNAC	3 cut(s)	271, 802, 1405
Hpy188I	TCNGA	6 cut(s)	83, 562, 638, 673, 736, 910
Hpy188III	TCNNGA	9 cut(s)	276, 326, 407, 574, 596, 1094, 1127, 1174, 1386
Hpy8I	GTNNAC	3 cut(s)	271, 802, 1405
HpyAV	CCTTC	6 cut(s)	179, 513, 636, 701, 1483, 1522
HpyCH4III	ACNGT	4 cut(s)	376, 768, 783, 1525
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 344, 1052, 1142, 1436
HpyF3I	CTNAG	2 cut(s)	289, 1137
Hsp92II	CATG	5 cut(s)	227, 410, 808, 1149, 1177
KflI	GGGWCCC	1 cut(s)	351
Ksp22I	TGATCA	4 cut(s)	835, 1059, 1278, 1459
Kzo9I	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	2 cut(s)	478, 800
LweI	GCATC	2 cut(s)	740, 1126
MaeI	CTAG	2 cut(s)	1320, 1564
MaeIII	GTNAC	1 cut(s)	1525
MalI	GATC	8 cut(s)	80, 837, 1029, 1061, 1069, 1280, 1398, 1461
MboI	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
MfeI	CAATTG	2 cut(s)	721, 1296
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	9 cut(s)	662, 721, 878, 990, 1033, 1161, 1296, 1312, 1330
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	414, 684
MseI	TTAA	2 cut(s)	198, 1356
MslI	CAYNNNNRTG	2 cut(s)	222, 1379
MspA1I	CMGCKG	2 cut(s)	9, 791
MspCI	CTTAAG	1 cut(s)	1355
MspI	CCGG	3 cut(s)	534, 797, 1002
MspR9I	CCNGG	4 cut(s)	261, 1003, 1110, 1449
MunI	CAATTG	2 cut(s)	721, 1296
Mva1269I	GAATGC	2 cut(s)	1057, 1547
MvaI	CCWGG	3 cut(s)	261, 1110, 1449
MwoI	GCNNNNNNNGC	5 cut(s)	15, 344, 1052, 1142, 1436
NciI	CCSGG	1 cut(s)	1003
NdeII	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
NheI	GCTAGC	1 cut(s)	1319
NlaIII	CATG	5 cut(s)	227, 410, 808, 1149, 1177
NlaIV	GGNNCC	5 cut(s)	352, 353, 425, 684, 1012
NspI	RCATGY	1 cut(s)	1149
OliI	CACNNNNGTG	1 cut(s)	1379
PaeI	GCATGC	1 cut(s)	1149
PagI	TCATGA	2 cut(s)	406, 1173
PctI	GAATGC	2 cut(s)	1057, 1547
PfeI	GAWTC	3 cut(s)	331, 1292, 1532
PflMI	CCANNNNNTGG	2 cut(s)	238, 881
PkrI	GCNGC	3 cut(s)	11, 493, 790
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	989
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	3 cut(s)	259, 1108, 1447
PspFI	CCCAGC	3 cut(s)	347, 791, 1235
PspGI	CCWGG	3 cut(s)	259, 1108, 1447
PspN4I	GGNNCC	5 cut(s)	352, 353, 425, 684, 1012
PspPI	GGNCC	5 cut(s)	33, 351, 794, 995, 1492
PspPPI	RGGWCCY	1 cut(s)	351
PstNI	CAGNNNCTG	2 cut(s)	238, 266
PvuII	CAGCTG	2 cut(s)	9, 791
RsaI	GTAC	3 cut(s)	780, 863, 1254
RsaNI	GTAC	3 cut(s)	779, 862, 1253
RseI	CAYNNNNRTG	2 cut(s)	222, 1379
SaqAI	TTAA	2 cut(s)	198, 1356
SatI	GCNGC	3 cut(s)	10, 492, 789
Sau3AI	GATC	8 cut(s)	78, 835, 1027, 1059, 1067, 1278, 1396, 1459
Sau96I	GGNCC	5 cut(s)	33, 351, 794, 995, 1492
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	4 cut(s)	261, 1003, 1110, 1449
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	740, 1126
SinI	GGWCC	3 cut(s)	33, 351, 995
SmiMI	CAYNNNNRTG	2 cut(s)	222, 1379
SmlI	CTYRAG	4 cut(s)	274, 326, 617, 1355
SmoI	CTYRAG	4 cut(s)	274, 326, 617, 1355
SphI	GCATGC	1 cut(s)	1149
Sse9I	AATT	9 cut(s)	662, 721, 878, 990, 1033, 1161, 1296, 1312, 1330
SsiI	CCGC	2 cut(s)	99, 771
SspMI	CTAG	2 cut(s)	1320, 1564
StyD4I	CCNGG	4 cut(s)	259, 1001, 1108, 1447
TaaI	ACNGT	4 cut(s)	376, 768, 783, 1525
TaqI	TCGA	2 cut(s)	518, 1218
TasI	AATT	9 cut(s)	662, 721, 878, 990, 1033, 1161, 1296, 1312, 1330
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	3 cut(s)	331, 1292, 1532
Tru1I	TTAA	2 cut(s)	198, 1356
Tru9I	TTAA	2 cut(s)	198, 1356
TscAI	CASTG	5 cut(s)	243, 289, 493, 532, 1062
TseI	GCWGC	3 cut(s)	9, 491, 788
TspDTI	ATGAA	8 cut(s)	189, 495, 617, 655, 821, 930, 1162, 1190
TspRI	CASTG	5 cut(s)	243, 289, 493, 532, 1062
Van91I	CCANNNNNTGG	2 cut(s)	238, 881
Vha464I	CTTAAG	1 cut(s)	1355
VpaK11BI	GGWCC	3 cut(s)	33, 351, 995
XapI	RAATTY	2 cut(s)	662, 878
XceI	RCATGY	1 cut(s)	1149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	978
XspI	CTAG	2 cut(s)	1320, 1564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.