Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016052

Physical Location & Seq

Genomic Coordinates Reverse (-)

22803450 .. 22806480

Gene Structure 3031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGTTCAGCTGCAAAAGCTTGTTGTCCAAAAGGACCAAAACCATAAAGAAAAAGAAGAAAAACAAGAGCAAAAACAAGATCAGAAGCAAAAATGTTCCCGCAAAACAAAACCCCATTTGCGAAAAATACCAAGAAGAAGAAGAAGAAGAAGAAGAGATAGAGGAAGAAGAAGATAGTGATGAAGTTGAAGAAGGCTTCAATCTTAAAGCCTCTGCTCCATCTCAGACACATGGAGTCCAGCCACTGGGCAATCTCTACCTCAACCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAATCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGATTCTGGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCAACTGTGAGCAAATCATTTTATATCTTTGCAAATCATGAGCCCCTTTGGAGGAACCTTGTGTTGGAAAATCTCGGTGGTAGGCTTTTGTATAATGGCTCTTGGAAATCTACTTACATTGCTGCTCATTACCCTTCATTTGATGTGTCGAATATCAGTGTTTCCGGTTTGAGAGTGAGAGACTTTTATTCTGACTATCTCTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCCGAATGGCTTGAGAGAGATAATATAATCCGAAGAAGGGGCATTTCAGTTGAGGAATTCATTTCCGATTTTGAGGAACCGAATAAGCCTGTGCTGTTGGAAGGGTGTATGGACAATTGGGTTGCATCAGAGAAATGGGATAGAGATTATTTGGTTCAACTGTGTGGTGATGTACAATTTGCAGCTGGGCCGGTGGACATGAAGCTTGAGGACTATTTTAGATATGCTGATCAGGTGAGGGAAGAGAGGCCATTGTACCTTTTTGACCCAAAATTTGGAGAAAAAGTAGCAAGATTGGGTTCGGAGTATGAAGTTCCTGTGTACTTTAGGGAGGACTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGGTATTGTTTCCTCCTGATGTTGTTCCTCCGGGGGTGCATCCCAGTCCAGATGGTGCTGAGGTGGCATGCCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGACTTGGAAAAGGAAACCTATCGAGTGCATTTGTAAGGCTGGGGAGGTGATTTTTGTACCTAATGGTTGGTGGCATTTGGTGATCAACTTGGAGGAATCAATTGCCATTACGCAGAATTATGCTAGCAGGAGTAATTTGTTGAATGTCTTGGAATTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGAACGAGAGATCGGGTGAACTTGTATGAGAAGTTTAGAAATGCTATTGAGGCTTCTTTACCTGGAACTATTGATCATTTGTTGCAAAAAGCAGAAGAGAAGAAGGCCCAACAGAGTAAACCCTCATTCTGGGATACAGTTACAGATTCAAAGGCTGGTGCATTCAAGTTCTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0010029 GO:0010030 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0032259 GO:0034969 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0043985 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1900140 GO:1901363 GO:1901564 GO:1990837 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 F-box F-box-like

Protein Analysis

523

Amino Acids

59.57

Weight (kDa)

5.56

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	107 - 147	3.2e-06	F-box-like
Cupin_8	PF13621	275 - 443	4e-16	Cupin-like domain
JmjC	PF02373	330 - 440	2.6e-12	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06550
fragaria_vesca	FvH4_6g21050 FvH4_6g21050
malus_domestica	MD12G1046300.v1.1
prunus_persica	Prupe.7G089800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477431
rosa_laevigata	RLG00000023722
rosa_roxburghii	Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa	Rorug03G0160700
rosa_samantha	Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana	Rw3G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	995
AccB7I	CCANNNNNTGG	2 cut(s)	244, 887
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	1028, 1081
AcsI	RAATTY	3 cut(s)	668, 884, 1355
AfaI	GTAC	4 cut(s)	786, 869, 935, 1260
AfiI	CCNNNNNNNGG	8 cut(s)	244, 366, 367, 426, 439, 649, 887, 1521
AflII	CTTAAG	1 cut(s)	1361
AjnI	CCWGG	2 cut(s)	265, 1453
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	1385
AluBI	AGCT	7 cut(s)	9, 18, 325, 353, 797, 817, 1052
AluI	AGCT	7 cut(s)	9, 18, 325, 353, 797, 817, 1052
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	1028, 1081
AlwNI	CAGNNNCTG	2 cut(s)	244, 272
AoxI	GGCC	6 cut(s)	342, 800, 860, 974, 1367, 1497
ApeKI	GCWGC	3 cut(s)	9, 497, 794
ApoI	RAATTY	3 cut(s)	668, 884, 1355
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
AspS9I	GGNCC	5 cut(s)	33, 357, 800, 1001, 1498
AsuC2I	CCSGG	2 cut(s)	1009, 1116
AsuHPI	GGTGA	5 cut(s)	791, 859, 1261, 1294, 1420
AsuNHI	GCTAGC	1 cut(s)	1325
AvaII	GGWCC	3 cut(s)	33, 357, 1001
BanII	GRGCYC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	2 cut(s)	484, 806
BccI	CCATC	3 cut(s)	226, 981, 1130
BciT130I	CCWGG	2 cut(s)	267, 1455
BciVI	GTATCC	1 cut(s)	1519
BclI	TGATCA	4 cut(s)	841, 1065, 1284, 1465
BcnI	CCSGG	2 cut(s)	1009, 1116
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	1326, 1570
BfrI	CTTAAG	1 cut(s)	1361
BfuI	GTATCC	1 cut(s)	1519
BisI	GCNGC	3 cut(s)	10, 498, 795
BlsI	GCNGC	3 cut(s)	11, 499, 796
Bme1390I	CCNGG	4 cut(s)	267, 1009, 1116, 1455
Bme18I	GGWCC	3 cut(s)	33, 357, 1001
BmgT120I	GGNCC	5 cut(s)	33, 357, 800, 1001, 1498
BmiI	GGNNCC	5 cut(s)	358, 359, 431, 690, 1018
BmrFI	CCNGG	4 cut(s)	267, 1009, 1116, 1455
BmrI	ACTGGG	2 cut(s)	254, 1122
BmsI	GCATC	2 cut(s)	746, 1132
BmtI	GCTAGC	1 cut(s)	1329
BmuI	ACTGGG	2 cut(s)	254, 1122
Bpu10I	CCTNAGC	2 cut(s)	295, 1143
BpuEI	CTTGAG	4 cut(s)	265, 353, 644, 839
BpuMI	CCSGG	2 cut(s)	1009, 1116
BsaJI	CCNNGG	2 cut(s)	265, 1115
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	4 cut(s)	882, 912, 935, 965
Bsc4I	CCNNNNNNNGG	8 cut(s)	244, 366, 367, 426, 439, 649, 887, 1521
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	3 cut(s)	249, 295, 1128
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	267, 1455
BseDI	CCNNGG	2 cut(s)	265, 1115
BseGI	GGATG	1 cut(s)	1123
BseLI	CCNNNNNNNGG	8 cut(s)	244, 366, 367, 426, 439, 649, 887, 1521
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	236, 1134
BseNI	ACTGG	3 cut(s)	249, 295, 1128
BseXI	GCAGC	2 cut(s)	484, 806
BseYI	CCCAGC	3 cut(s)	353, 797, 1241
BshFI	GGCC	6 cut(s)	344, 802, 862, 976, 1369, 1499
BsiSI	CCGG	4 cut(s)	540, 803, 1008, 1115
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	8 cut(s)	244, 366, 367, 426, 439, 649, 887, 1521
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	1063, 1553
BsnI	GGCC	6 cut(s)	344, 802, 862, 976, 1369, 1499
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	784
Bsp143I	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	6 cut(s)	344, 802, 862, 976, 1369, 1499
BspCNI	CTCAG	2 cut(s)	235, 1135
BspHI	TCATGA	2 cut(s)	412, 1179
BspLI	GGNNCC	5 cut(s)	358, 359, 431, 690, 1018
BspOI	GCTAGC	1 cut(s)	1329
BspPI	GGATC	2 cut(s)	1028, 1081
BspTI	CTTAAG	1 cut(s)	1361
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	802
BsrGI	TGTACA	1 cut(s)	784
BsrI	ACTGG	3 cut(s)	249, 295, 1128
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	2 cut(s)	265, 1115
BssMI	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
Bst2UI	CCWGG	2 cut(s)	267, 1455
Bst4CI	ACNGT	3 cut(s)	382, 774, 1531
Bst6I	CTCTTC	4 cut(s)	147, 581, 849, 1482
BstAFI	CTTAAG	1 cut(s)	1361
BstAUI	TGTACA	1 cut(s)	784
BstC8I	GCNNGC	3 cut(s)	1153, 1327, 1378
BstDEI	CTNAG	3 cut(s)	222, 295, 1143
BstF5I	GGATG	1 cut(s)	1123
BstKTI	GATC	8 cut(s)	81, 844, 1036, 1068, 1076, 1287, 1405, 1468
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 350, 1058, 1148, 1442
BstNI	CCWGG	2 cut(s)	267, 1455
BstNSI	RCATGY	1 cut(s)	1155
BstSCI	CCNGG	4 cut(s)	265, 1007, 1114, 1453
BstV1I	GCAGC	2 cut(s)	484, 806
BstXI	CCANNNNNNTGG	1 cut(s)	1384
BsuI	GTATCC	1 cut(s)	1519
BsuRI	GGCC	6 cut(s)	344, 802, 862, 976, 1369, 1499
BtsCI	GGATG	1 cut(s)	1123
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	4 cut(s)	242, 288, 538, 1068
Cac8I	GCNNGC	3 cut(s)	1153, 1327, 1378
CaiI	CAGNNNCTG	2 cut(s)	244, 272
CciI	TCATGA	2 cut(s)	412, 1179
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	5 cut(s)	33, 357, 800, 1001, 1498
Csp6I	GTAC	4 cut(s)	785, 868, 934, 1259
CviAII	CATG	5 cut(s)	230, 413, 811, 1152, 1180
CviQI	GTAC	4 cut(s)	785, 868, 934, 1259
DdeI	CTNAG	3 cut(s)	222, 295, 1143
DpnI	GATC	8 cut(s)	80, 843, 1035, 1067, 1075, 1286, 1404, 1467
DpnII	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
Eam1104I	CTCTTC	4 cut(s)	147, 581, 849, 1482
EarI	CTCTTC	4 cut(s)	147, 581, 849, 1482
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	3 cut(s)	33, 357, 1001
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	265, 1453
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	5 cut(s)	233, 416, 814, 1155, 1183
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	229, 412, 810, 1151, 1179
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	4 cut(s)	841, 1065, 1284, 1465
Fnu4HI	GCNGC	3 cut(s)	10, 498, 795
FokI	GGATG	1 cut(s)	1110
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	3 cut(s)	10, 498, 795
FspBI	CTAG	2 cut(s)	1326, 1570
GluI	GCNGC	3 cut(s)	10, 498, 795
GsaI	CCCAGC	3 cut(s)	357, 801, 1245
HaeIII	GGCC	6 cut(s)	344, 802, 862, 976, 1369, 1499
HapII	CCGG	4 cut(s)	540, 803, 1008, 1115
Hin1II	CATG	5 cut(s)	233, 416, 814, 1155, 1183
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	16, 815
HinfI	GANTC	4 cut(s)	234, 337, 1298, 1538
HpaII	CCGG	4 cut(s)	540, 803, 1008, 1115
HphI	GGTGA	5 cut(s)	791, 859, 1261, 1294, 1420
Hpy166II	GTNNAC	5 cut(s)	277, 808, 934, 1411, 1511
Hpy188I	TCNGA	7 cut(s)	83, 225, 568, 644, 679, 742, 916
Hpy188III	TCNNGA	9 cut(s)	282, 332, 413, 580, 602, 1100, 1133, 1180, 1392
Hpy8I	GTNNAC	5 cut(s)	277, 808, 934, 1411, 1511
HpyAV	CCTTC	5 cut(s)	185, 519, 642, 707, 1489
HpyCH4III	ACNGT	3 cut(s)	382, 774, 1531
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 350, 1058, 1148, 1442
HpyF3I	CTNAG	3 cut(s)	222, 295, 1143
Hsp92II	CATG	5 cut(s)	233, 416, 814, 1155, 1183
KflI	GGGWCCC	1 cut(s)	357
Ksp22I	TGATCA	4 cut(s)	841, 1065, 1284, 1465
Kzo9I	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	484, 806
LweI	GCATC	2 cut(s)	746, 1132
MaeI	CTAG	2 cut(s)	1326, 1570
MaeIII	GTNAC	1 cut(s)	1531
MalI	GATC	8 cut(s)	80, 843, 1035, 1067, 1075, 1286, 1404, 1467
MboI	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
MfeI	CAATTG	2 cut(s)	727, 1302
MhlI	GDGCHC	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	2 cut(s)	420, 690
MseI	TTAA	2 cut(s)	204, 1362
MslI	CAYNNNNRTG	1 cut(s)	1385
MspA1I	CMGCKG	2 cut(s)	9, 797
MspCI	CTTAAG	1 cut(s)	1361
MspI	CCGG	4 cut(s)	540, 803, 1008, 1115
MspR9I	CCNGG	4 cut(s)	267, 1009, 1116, 1455
MunI	CAATTG	2 cut(s)	727, 1302
Mva1269I	GAATGC	2 cut(s)	1063, 1553
MvaI	CCWGG	2 cut(s)	267, 1455
MwoI	GCNNNNNNNGC	5 cut(s)	15, 350, 1058, 1148, 1442
NciI	CCSGG	2 cut(s)	1009, 1116
NdeII	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
NheI	GCTAGC	1 cut(s)	1325
NlaIII	CATG	5 cut(s)	233, 416, 814, 1155, 1183
NlaIV	GGNNCC	5 cut(s)	358, 359, 431, 690, 1018
NspI	RCATGY	1 cut(s)	1155
OliI	CACNNNNGTG	1 cut(s)	1385
PaeI	GCATGC	1 cut(s)	1155
PagI	TCATGA	2 cut(s)	412, 1179
PctI	GAATGC	2 cut(s)	1063, 1553
PfeI	GAWTC	3 cut(s)	337, 1298, 1538
PflMI	CCANNNNNTGG	2 cut(s)	244, 887
PkrI	GCNGC	3 cut(s)	11, 499, 796
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	995
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	265, 1453
PspFI	CCCAGC	3 cut(s)	353, 797, 1241
PspGI	CCWGG	2 cut(s)	265, 1453
PspN4I	GGNNCC	5 cut(s)	358, 359, 431, 690, 1018
PspPI	GGNCC	5 cut(s)	33, 357, 800, 1001, 1498
PspPPI	RGGWCCY	1 cut(s)	357
PstNI	CAGNNNCTG	2 cut(s)	244, 272
PvuII	CAGCTG	2 cut(s)	9, 797
RsaI	GTAC	4 cut(s)	786, 869, 935, 1260
RsaNI	GTAC	4 cut(s)	785, 868, 934, 1259
RseI	CAYNNNNRTG	1 cut(s)	1385
SaqAI	TTAA	2 cut(s)	204, 1362
SatI	GCNGC	3 cut(s)	10, 498, 795
Sau3AI	GATC	8 cut(s)	78, 841, 1033, 1065, 1073, 1284, 1402, 1465
Sau96I	GGNCC	5 cut(s)	33, 357, 800, 1001, 1498
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	267, 1009, 1116, 1455
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	746, 1132
SinI	GGWCC	3 cut(s)	33, 357, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	1385
SmlI	CTYRAG	5 cut(s)	280, 332, 623, 818, 1361
SmoI	CTYRAG	5 cut(s)	280, 332, 623, 818, 1361
SphI	GCATGC	1 cut(s)	1155
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	1326, 1570
StyD4I	CCNGG	4 cut(s)	265, 1007, 1114, 1453
TaaI	ACNGT	3 cut(s)	382, 774, 1531
TaqI	TCGA	2 cut(s)	524, 1224
TatI	WGTACW	2 cut(s)	784, 933
TfiI	GAWTC	3 cut(s)	337, 1298, 1538
Tru1I	TTAA	2 cut(s)	204, 1362
Tru9I	TTAA	2 cut(s)	204, 1362
TscAI	CASTG	4 cut(s)	249, 295, 538, 1068
TseI	GCWGC	3 cut(s)	9, 497, 794
TspDTI	ATGAA	8 cut(s)	195, 501, 623, 661, 827, 936, 1168, 1196
TspRI	CASTG	4 cut(s)	249, 295, 538, 1068
Van91I	CCANNNNNTGG	2 cut(s)	244, 887
Vha464I	CTTAAG	1 cut(s)	1361
VpaK11BI	GGWCC	3 cut(s)	33, 357, 1001
XapI	RAATTY	3 cut(s)	668, 884, 1355
XceI	RCATGY	1 cut(s)	1155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	984
XspI	CTAG	2 cut(s)	1326, 1570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.