Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016052

Physical Location & Seq

Genomic Coordinates Reverse (-)

12346319 .. 12349004

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGCTTAGCTGCAAAACCTTATTGTCCAGAAGGACCAAAATCATAAGGAAAAATAAGAAAAAGAAAAGCAAAAACAACAAAAGAAGCATCAGTTTTTCTACAAAACAAAACCCCATTTCCGAAAAATACCAGCAAGAAGAAGATATAGAGGAAGAGGAAGAAGAAGATGGTGATGATGTTGAGGAAGGTTTTAATCTTAAAGCCTCGGCCCCATCACAATCACATGGGGTTCAACCACTGGGCAATCTCTACCTCAGCCCAGGCTCTGTCAACTCAAGGAACACTGGCTTAGGTAATCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGGTTTTGGGGTTTTTGGGTGGGGCCCATTTGGGGTTTTTGGCCTCTGTGAGCAAATCTTTCTATGTCTTTGCAAACCATGAGCCCCTTTGGAGGAACCTTGTGTTGGATAATCTAGAGGGTAGGCTTTTGTATAATGGCTCTTGGAAATCTACTTATATTGCTGCTCATTACCCTTCATTTGATTCGTCTAATATCTGTGTTTCGGGTTTGAGAGTGAGAGACTTTTATTCTGACTATCTCTTTCAGAGTTGGCTCTGTGCCAATCTCGAAATGAAACCTGAATGGCTTCAAAGAGATAATATAATCCGAAGAAGGGGCATTTCGGTTGAGGAATTCATTTCTGATTTTGAGGAACCAAATAAGCCGGTGCTGTTGGAAGGGTGTATGGATAATTGGGTTGCATTGGAGAAGTGGGATAGAGATTATTTGGTTCAGGTGTGTGGTGATGTACAATTTTCAGTTGGGCCGGTGGAGATGAAACTTGGGGAGTATTTTAGGTATGCTGATCAGGCGAGGGAAGAGAGGCCGCTGTATCTATTTGACCCAAAATTTGGAGAAAAAGTTGCAATATTGGGTTCAGAGTATGAAGTTCCAGTGTATTTTAGGGAGGACTTATTTGGTGTGTTGGGAAGTGAGAGGCCAGATTACAGATGGATTATAATTGGACCAGCTGGATCAGGTTCCTCGTTCCACATTGATCCTAATTCGACTTCAGCTTGGAATGCGGTGATCAAGGGGTCAAAGAAGTGGGTATTGTTTCCTCCTGATGTGGTTCCTCCAGGGGTGCATCCCAGTCCAGATGGTGCCGAGGTGGCATGTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGACTTGGAAAAGGAAGCCTATCGAGTGCATTTGTAAGGCGGGGGAGGTGATTTTTGTACCTCAGGGATGGTGGCATTTGGTGATCAACTTGGAGGAATCAGTTGCCATTACACAGAATTATGTTAGCAGGAGAAATTTGTTGAATGTCATGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTTGTATCTGGAACGAGAGATCGGGTGAATTTGTATGATAAGTTTAAAAGTGCTATTGAGGCTTCTTTTCCTGGTACTATTGATCATCTTACGCAGAAGGCAGAAGAGAAGAAGGCCCAACAGAAAAAACCCTCCTTCTGGGATTCAGTTACAGATTCGAAGGCCGGTGCTTTCAAGTTCTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0010029 GO:0010030 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0032259 GO:0034969 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0043985 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1900140 GO:1901363 GO:1901564 GO:1990837 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 F-box F-box-like

Protein Analysis

522

Amino Acids

59.25

Weight (kDa)

5.91

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06550
fragaria_vesca	FvH4_6g21050 FvH4_6g21050
malus_domestica	MD12G1046300.v1.1
prunus_persica	Prupe.7G089800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477431
rosa_laevigata	RLG00000023722
rosa_roxburghii	Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa	Rorug03G0160700
rosa_samantha	Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana	Rw3G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	1133
AccB7I	CCANNNNNTGG	1 cut(s)	881
AciI	CCGC	3 cut(s)	857, 1055, 1235
AclWI	GGATC	2 cut(s)	1012, 1022
AcsI	RAATTY	4 cut(s)	662, 878, 1330, 1405
AcuI	CTGAAG	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	780, 1254, 1453
AfiI	CCNNNNNNNGG	6 cut(s)	360, 420, 433, 643, 881, 1515
AflII	CTTAAG	1 cut(s)	1355
AgsI	TTSAA	6 cut(s)	233, 620, 1158, 1166, 1339, 1552
AjnI	CCWGG	3 cut(s)	259, 1108, 1447
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	4 cut(s)	9, 319, 1001, 1046
AluI	AGCT	4 cut(s)	9, 319, 1001, 1046
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	1012, 1022
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	9 cut(s)	207, 351, 369, 794, 854, 968, 1361, 1491, 1539
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	9, 491
ApoI	RAATTY	4 cut(s)	662, 878, 1330, 1405
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	7 cut(s)	33, 208, 351, 352, 794, 995, 1492
AsuHPI	GGTGA	6 cut(s)	182, 785, 1069, 1255, 1288, 1414
AsuII	TTCGAA	1 cut(s)	1535
AvaII	GGWCC	2 cut(s)	33, 995
AxyI	CCTNAGG	1 cut(s)	1257
BaeGI	GKGCMC	1 cut(s)	355
BaeI	ACNNNNGTAYC	2 cut(s)	1365, 1398
BanI	GGYRCC	1 cut(s)	1133
BanII	GRGCYC	2 cut(s)	355, 414
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	5 cut(s)	161, 220, 975, 1124, 1257
BciT130I	CCWGG	3 cut(s)	261, 1110, 1449
BclI	TGATCA	4 cut(s)	835, 1059, 1278, 1459
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	2 cut(s)	443, 1564
BfrI	CTTAAG	1 cut(s)	1355
BglI	GCCNNNNNGGC	1 cut(s)	1142
BisI	GCNGC	3 cut(s)	10, 492, 857
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	3 cut(s)	11, 493, 858
Bme1390I	CCNGG	3 cut(s)	261, 1110, 1449
Bme18I	GGWCC	2 cut(s)	33, 995
BmgT120I	GGNCC	7 cut(s)	33, 208, 351, 352, 794, 995, 1492
BmiI	GGNNCC	8 cut(s)	210, 352, 353, 425, 684, 1012, 1104, 1135
BmrFI	CCNGG	3 cut(s)	261, 1110, 1449
BmrI	ACTGGG	2 cut(s)	248, 1116
BmsI	GCATC	2 cut(s)	96, 1126
BmuI	ACTGGG	2 cut(s)	248, 1116
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	254, 289
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	1535
BpuEI	CTTGAG	2 cut(s)	259, 347
BsaJI	CCNNGG	4 cut(s)	204, 259, 1109, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	6 cut(s)	360, 420, 433, 643, 881, 1515
Bse118I	RCCGGY	3 cut(s)	694, 796, 1541
Bse1I	ACTGG	4 cut(s)	243, 289, 923, 1122
Bse21I	CCTNAGG	1 cut(s)	1257
BseBI	CCWGG	3 cut(s)	261, 1110, 1449
BseDI	CCNNGG	4 cut(s)	204, 259, 1109, 1137
BseGI	GGATG	2 cut(s)	1117, 1268
BseLI	CCNNNNNNNGG	6 cut(s)	360, 420, 433, 643, 881, 1515
BseMII	CTCAG	2 cut(s)	268, 1271
BseNI	ACTGG	4 cut(s)	243, 289, 923, 1122
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	478
BshFI	GGCC	9 cut(s)	209, 353, 371, 796, 856, 970, 1363, 1493, 1541
BshNI	GGYRCC	1 cut(s)	1133
BsiSI	CCGG	3 cut(s)	695, 797, 1542
BslI	CCNNNNNNNGG	6 cut(s)	360, 420, 433, 643, 881, 1515
BsmAI	GTCTC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	9 cut(s)	209, 353, 371, 796, 856, 970, 1363, 1493, 1541
Bsp119I	TTCGAA	1 cut(s)	1535
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	355, 414
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	857, 1055, 1235
BspANI	GGCC	9 cut(s)	209, 353, 371, 796, 856, 970, 1363, 1493, 1541
BspCNI	CTCAG	2 cut(s)	267, 1270
BspHI	TCATGA	1 cut(s)	1173
BspLI	GGNNCC	8 cut(s)	210, 352, 353, 425, 684, 1012, 1104, 1135
BspPI	GGATC	2 cut(s)	1012, 1022
BspT104I	TTCGAA	1 cut(s)	1535
BspT107I	GGYRCC	1 cut(s)	1133
BspTI	CTTAAG	1 cut(s)	1355
BsrFI	RCCGGY	3 cut(s)	694, 796, 1541
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	4 cut(s)	243, 289, 923, 1122
BssAI	RCCGGY	3 cut(s)	694, 796, 1541
BssECI	CCNNGG	4 cut(s)	204, 259, 1109, 1137
BssMI	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
Bst2UI	CCWGG	3 cut(s)	261, 1110, 1449
Bst6I	CTCTTC	3 cut(s)	147, 843, 1476
BstAFI	CTTAAG	1 cut(s)	1355
BstAUI	TGTACA	1 cut(s)	778
BstBI	TTCGAA	1 cut(s)	1535
BstC8I	GCNNGC	1 cut(s)	1372
BstDEI	CTNAG	4 cut(s)	5, 254, 289, 1257
BstF5I	GGATG	2 cut(s)	1117, 1268
BstKTI	GATC	7 cut(s)	838, 1007, 1030, 1062, 1281, 1399, 1462
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
BstMWI	GCNNNNNNNGC	4 cut(s)	839, 1052, 1142, 1436
BstNI	CCWGG	3 cut(s)	261, 1110, 1449
BstNSI	RCATGY	1 cut(s)	1149
BstSCI	CCNGG	3 cut(s)	259, 1108, 1447
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	1257
BsuRI	GGCC	9 cut(s)	209, 353, 371, 796, 856, 970, 1363, 1493, 1541
BtsCI	GGATG	2 cut(s)	1117, 1268
BtsIMutI	CAGTG	3 cut(s)	236, 282, 930
Cac8I	GCNNGC	1 cut(s)	1372
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	1173
Cfr10I	RCCGGY	3 cut(s)	694, 796, 1541
Cfr13I	GGNCC	7 cut(s)	33, 208, 351, 352, 794, 995, 1492
Csp6I	GTAC	3 cut(s)	779, 1253, 1452
CviAII	CATG	5 cut(s)	224, 407, 1146, 1174, 1345
CviQI	GTAC	3 cut(s)	779, 1253, 1452
DdeI	CTNAG	4 cut(s)	5, 254, 289, 1257
DpnI	GATC	7 cut(s)	837, 1006, 1029, 1061, 1280, 1398, 1461
DpnII	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
DraI	TTTAAA	1 cut(s)	1423
Eam1104I	CTCTTC	3 cut(s)	147, 843, 1476
EarI	CTCTTC	3 cut(s)	147, 843, 1476
Eco24I	GRGCYC	2 cut(s)	355, 414
Eco47I	GGWCC	2 cut(s)	33, 995
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	1 cut(s)	1257
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	3 cut(s)	259, 1108, 1447
EcoT38I	GRGCYC	2 cut(s)	355, 414
FaeI	CATG	5 cut(s)	227, 410, 1149, 1177, 1348
FatI	CATG	5 cut(s)	223, 406, 1145, 1173, 1344
FauI	CCCGC	1 cut(s)	1228
FbaI	TGATCA	4 cut(s)	835, 1059, 1278, 1459
Fnu4HI	GCNGC	3 cut(s)	10, 492, 857
FokI	GGATG	2 cut(s)	1104, 1275
FriOI	GRGCYC	2 cut(s)	355, 414
Fsp4HI	GCNGC	3 cut(s)	10, 492, 857
FspBI	CTAG	2 cut(s)	443, 1564
GluI	GCNGC	3 cut(s)	10, 492, 857
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	9 cut(s)	209, 353, 371, 796, 856, 970, 1363, 1493, 1541
HapII	CCGG	3 cut(s)	695, 797, 1542
Hin1II	CATG	5 cut(s)	227, 410, 1149, 1177, 1348
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	512, 1292, 1520, 1532
HpaII	CCGG	3 cut(s)	695, 797, 1542
HphI	GGTGA	6 cut(s)	182, 785, 1069, 1255, 1288, 1414
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	6 cut(s)	121, 562, 576, 638, 673, 910
Hpy188III	TCNNGA	8 cut(s)	27, 326, 443, 596, 1094, 1127, 1174, 1386
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	9 cut(s)	24, 179, 513, 636, 701, 1468, 1483, 1522, 1531
HpyCH4V	TGCA	7 cut(s)	12, 401, 731, 896, 1117, 1190, 1224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	839, 1052, 1142, 1436
HpyF3I	CTNAG	4 cut(s)	5, 254, 289, 1257
Hsp92II	CATG	5 cut(s)	227, 410, 1149, 1177, 1348
Ksp22I	TGATCA	4 cut(s)	835, 1059, 1278, 1459
Kzo9I	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	96, 1126
MaeI	CTAG	2 cut(s)	443, 1564
MaeIII	GTNAC	1 cut(s)	1525
MalI	GATC	7 cut(s)	837, 1006, 1029, 1061, 1280, 1398, 1461
MboI	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
MhlI	GDGCHC	2 cut(s)	355, 414
MmeI	TCCRAC	2 cut(s)	414, 684
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	4 cut(s)	192, 198, 1356, 1422
MspA1I	CMGCKG	2 cut(s)	859, 1001
MspCI	CTTAAG	1 cut(s)	1355
MspI	CCGG	3 cut(s)	695, 797, 1542
MspR9I	CCNGG	3 cut(s)	261, 1110, 1449
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	3 cut(s)	261, 1110, 1449
MwoI	GCNNNNNNNGC	4 cut(s)	839, 1052, 1142, 1436
NdeII	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
NlaIII	CATG	5 cut(s)	227, 410, 1149, 1177, 1348
NlaIV	GGNNCC	8 cut(s)	210, 352, 353, 425, 684, 1012, 1104, 1135
NmeAIII	GCCGAG	2 cut(s)	185, 1162
NspI	RCATGY	1 cut(s)	1149
NspV	TTCGAA	1 cut(s)	1535
PagI	TCATGA	1 cut(s)	1173
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	512, 1292, 1520, 1532
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	3 cut(s)	11, 493, 858
PsiI	TTATAA	1 cut(s)	989
Psp6I	CCWGG	3 cut(s)	259, 1108, 1447
PspGI	CCWGG	3 cut(s)	259, 1108, 1447
PspN4I	GGNNCC	8 cut(s)	210, 352, 353, 425, 684, 1012, 1104, 1135
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	7 cut(s)	33, 208, 351, 352, 794, 995, 1492
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	3 cut(s)	780, 1254, 1453
RsaNI	GTAC	3 cut(s)	779, 1253, 1452
SaqAI	TTAA	4 cut(s)	192, 198, 1356, 1422
SatI	GCNGC	3 cut(s)	10, 492, 857
Sau3AI	GATC	7 cut(s)	835, 1004, 1027, 1059, 1278, 1396, 1459
Sau96I	GGNCC	7 cut(s)	33, 208, 351, 352, 794, 995, 1492
ScrFI	CCNGG	3 cut(s)	261, 1110, 1449
SduI	GDGCHC	2 cut(s)	355, 414
SfaNI	GCATC	2 cut(s)	96, 1126
SfuI	TTCGAA	1 cut(s)	1535
SinI	GGWCC	2 cut(s)	33, 995
SmlI	CTYRAG	3 cut(s)	274, 326, 1355
SmoI	CTYRAG	3 cut(s)	274, 326, 1355
SsiI	CCGC	3 cut(s)	857, 1055, 1235
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	2 cut(s)	443, 1564
StyD4I	CCNGG	3 cut(s)	259, 1108, 1447
TaqI	TCGA	4 cut(s)	597, 1037, 1218, 1535
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	4 cut(s)	512, 1292, 1520, 1532
Tru1I	TTAA	4 cut(s)	192, 198, 1356, 1422
Tru9I	TTAA	4 cut(s)	192, 198, 1356, 1422
TscAI	CASTG	3 cut(s)	243, 289, 930
TseI	GCWGC	2 cut(s)	9, 491
TspDTI	ATGAA	7 cut(s)	495, 617, 655, 821, 930, 1162, 1190
TspRI	CASTG	3 cut(s)	243, 289, 930
Van91I	CCANNNNNTGG	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	1355
VpaK11BI	GGWCC	2 cut(s)	33, 995
XapI	RAATTY	4 cut(s)	662, 878, 1330, 1405
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	1149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	978
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	443, 1564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.