Rroxscaffold_6G00404160

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016052
Physical Location & Seq
Forward (+)
26648594 .. 26651354
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404160.1

Sequence Viewer

Length: 1377 bp
ATGTTCAGCTGCAAAAGCTTATTGTCCAAAAGGACCAAAACCATAAAGAAAAAGAAGAAAAACAAGAGCAAAAACAAGATCAGAAGCAAAAATGTTCCCACAAAACAAAACCCCATTTGCGAAAAATACCAAGAAGAAGAAGAAGAAGAAGATAGTGATGATGTTGAAGAAGGCTTCAATCTTAAAGCCTCTGCTCCGTCTCACACACATGGAGTCCAGCCACTGGGCAATCTCTACCTCAACCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAACCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGATTCTGGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCAACTGTGAGCAAATCATTTTATATCTTTGCAAATCATGAGCCACTTTGGAGGAACCTTGTGTTGGAAAATCTCAGTGATAGGCTTTTGTATAATGGCTCTTGGAAATCTACTTACATTGCTGCTCATTACACTTCATTTGATGTGTCGAATATCAGTGTTTCCAGTTTGAGAGTGAGAGACTTTTATTCGGACTATCTCTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCCGAATGGCTTGAGAGAGATAATATAATCCGAAGAAGGGGCATTTCAGTTGAGGAATTCATTTCCGATTTTGAGGAACCGAATAAGCCTGTGCTGTTGGAAGGGTGTATGGACAATTGGGTTGCATCAGAGAAATGGGATAGAGATTATTTGGTTCAACTGTGTGGTGATGTACAATTTGCAGCTGGGCCGGTGGACATGAAGCTTGAGGACTATTTTAGATATGCTGATCAGGTGAGGGAAGAGAGGCCATTGTACCTTTTTGACCCAAAATTTGGAGAAAAAGTTGCAAGATTGGGTTCAGAGTATGAAGTGCCTGTGTACTTTAGGGAGGACTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCTGTGATCAAGGGATCAAAGAAGTGGGTGTTGTTTCCTCCTGATGTCGTTCCTCCGGAGTGCATCCCAGCCCAGATGGTGCTGAGGTGGCATGCCCTGAGTAATTTGCTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGAACGAGAGATCGGGTGAACTTGTATGATAAGTTTAGAAATGCTATTGACGCTTCTTTACCTGGAACCATTGATCATTTGTTGCAGAAAGCTGAAGAGAAGAAGGCCCAACAGAGTAAACCCTCCTTCTGGGATACAGTTACAGATTCAAAGGCTGGTGCATTCAAGTTCTCTTTCTAG

Protein Analysis

458

Amino Acids

52.34

Weight (kDa)

6.14

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 100 - 140 2.7e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06550
fragaria_vesca FvH4_6g21050 FvH4_6g21050
malus_domestica MD12G1046300.v1.1
prunus_persica Prupe.7G089800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0477431
rosa_laevigata RLG00000023722
rosa_roxburghii Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa Rorug03G0160700
rosa_samantha Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana Rw3G019120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AccB7I CCANNNNNTGG 2 cut(s) 223, 866
AccIII TCCGGA 1 cut(s) 1093
AclWI GGATC 2 cut(s) 1007, 1060
AcsI RAATTY 2 cut(s) 647, 863
AcuI CTGAAG 1 cut(s) 1311
AfaI GTAC 3 cut(s) 765, 848, 914
AfiI CCNNNNNNNGG 7 cut(s) 223, 345, 346, 418, 628, 866, 1326
AflII CTTAAG 1 cut(s) 1166
AgsI TTSAA 7 cut(s) 167, 178, 584, 749, 1023, 1347, 1363
AjnI CCWGG 2 cut(s) 244, 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AleI CACNNNNGTG 1 cut(s) 1190
AluBI AGCT 8 cut(s) 9, 18, 304, 332, 776, 796, 1031, 1289
AluI AGCT 8 cut(s) 9, 18, 304, 332, 776, 796, 1031, 1289
Alw26I GTCTC 2 cut(s) 204, 528
AlwI GGATC 2 cut(s) 1007, 1060
AlwNI CAGNNNCTG 2 cut(s) 223, 251
Aor13HI TCCGGA 1 cut(s) 1093
AoxI GGCC 6 cut(s) 321, 779, 839, 953, 1172, 1302
ApeKI GCWGC 3 cut(s) 9, 476, 773
ApoI RAATTY 2 cut(s) 647, 863
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
AspS9I GGNCC 5 cut(s) 33, 336, 779, 980, 1303
AsuC2I CCSGG 1 cut(s) 988
AsuHPI GGTGA 3 cut(s) 770, 838, 1225
AvaII GGWCC 3 cut(s) 33, 336, 980
BbvCI CCTCAGC 1 cut(s) 1121
BbvI GCAGC 2 cut(s) 463, 785
BccI CCATC 2 cut(s) 960, 1108
BciT130I CCWGG 2 cut(s) 246, 1260
BciVI GTATCC 1 cut(s) 1324
BclI TGATCA 3 cut(s) 820, 1044, 1270
BcnI CCSGG 1 cut(s) 988
BcoDI GTCTC 2 cut(s) 204, 528
BfaI CTAG 1 cut(s) 1375
BfrI CTTAAG 1 cut(s) 1166
BfuI GTATCC 1 cut(s) 1324
BisI GCNGC 3 cut(s) 10, 477, 774
BlsI GCNGC 3 cut(s) 11, 478, 775
Bme1390I CCNGG 3 cut(s) 246, 988, 1260
Bme18I GGWCC 3 cut(s) 33, 336, 980
BmgT120I GGNCC 5 cut(s) 33, 336, 779, 980, 1303
BmiI GGNNCC 6 cut(s) 337, 338, 410, 669, 997, 1264
BmrFI CCNGG 3 cut(s) 246, 988, 1260
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 725, 1110
BmuI ACTGGG 1 cut(s) 233
Bpu10I CCTNAGC 2 cut(s) 274, 1121
BpuEI CTTGAG 4 cut(s) 244, 332, 623, 818
BpuMI CCSGG 1 cut(s) 988
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 1093
BsaXI ACNNNNNCTCC 4 cut(s) 861, 891, 914, 944
Bsc4I CCNNNNNNNGG 7 cut(s) 223, 345, 346, 418, 628, 866, 1326
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 3 cut(s) 228, 274, 519
Bse3DI GCAATG 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 1093
BseBI CCWGG 2 cut(s) 246, 1260
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 1101
BseLI CCNNNNNNNGG 7 cut(s) 223, 345, 346, 418, 628, 866, 1326
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 442, 1112, 1127
BseNI ACTGG 3 cut(s) 228, 274, 519
BseXI GCAGC 2 cut(s) 463, 785
BseYI CCCAGC 3 cut(s) 332, 776, 1105
BshFI GGCC 6 cut(s) 323, 781, 841, 955, 1174, 1304
BsiSI CCGG 3 cut(s) 782, 987, 1094
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 7 cut(s) 223, 345, 346, 418, 628, 866, 1326
BsmAI GTCTC 2 cut(s) 204, 528
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 2 cut(s) 1042, 1358
BsnI GGCC 6 cut(s) 323, 781, 841, 955, 1174, 1304
Bsp13I TCCGGA 1 cut(s) 1093
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
BspANI GGCC 6 cut(s) 323, 781, 841, 955, 1174, 1304
BspCNI CTCAG 3 cut(s) 441, 1113, 1128
BspEI TCCGGA 1 cut(s) 1093
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 6 cut(s) 337, 338, 410, 669, 997, 1264
BspPI GGATC 2 cut(s) 1007, 1060
BspTI CTTAAG 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 763
BsrI ACTGG 3 cut(s) 228, 274, 519
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
Bst2UI CCWGG 2 cut(s) 246, 1260
Bst4CI ACNGT 3 cut(s) 361, 753, 1336
Bst6I CTCTTC 3 cut(s) 560, 828, 1287
BstAFI CTTAAG 1 cut(s) 1166
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 1131, 1183
BstDEI CTNAG 4 cut(s) 274, 428, 1121, 1136
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 1 cut(s) 1101
BstKTI GATC 7 cut(s) 81, 823, 1015, 1047, 1055, 1210, 1273
BstMAI GTCTC 2 cut(s) 204, 528
BstMBI GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
BstMWI GCNNNNNNNGC 5 cut(s) 15, 329, 1037, 1126, 1247
BstNI CCWGG 2 cut(s) 246, 1260
BstNSI RCATGY 1 cut(s) 1133
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 244, 986, 1258
BstV1I GCAGC 2 cut(s) 463, 785
BstXI CCANNNNNNTGG 1 cut(s) 1189
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 6 cut(s) 323, 781, 841, 955, 1174, 1304
BtsCI GGATG 1 cut(s) 1101
BtsIMutI CAGTG 4 cut(s) 221, 267, 436, 517
Cac8I GCNNGC 2 cut(s) 1131, 1183
CaiI CAGNNNCTG 2 cut(s) 223, 251
CciI TCATGA 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 5 cut(s) 33, 336, 779, 980, 1303
CseI GACGC 1 cut(s) 1256
Csp6I GTAC 3 cut(s) 764, 847, 913
CviAII CATG 4 cut(s) 209, 392, 790, 1130
CviQI GTAC 3 cut(s) 764, 847, 913
DdeI CTNAG 4 cut(s) 274, 428, 1121, 1136
DpnI GATC 7 cut(s) 80, 822, 1014, 1046, 1054, 1209, 1272
DpnII GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
Eam1104I CTCTTC 3 cut(s) 560, 828, 1287
EarI CTCTTC 3 cut(s) 560, 828, 1287
Eco47I GGWCC 3 cut(s) 33, 336, 980
Eco57I CTGAAG 1 cut(s) 1311
Eco91I GGTNACC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 244, 1258
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 4 cut(s) 212, 395, 793, 1133
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 208, 391, 789, 1129
FbaI TGATCA 3 cut(s) 820, 1044, 1270
Fnu4HI GCNGC 3 cut(s) 10, 477, 774
FokI GGATG 1 cut(s) 1088
Fsp4HI GCNGC 3 cut(s) 10, 477, 774
FspBI CTAG 1 cut(s) 1375
GluI GCNGC 3 cut(s) 10, 477, 774
GsaI CCCAGC 3 cut(s) 336, 780, 1109
HaeIII GGCC 6 cut(s) 323, 781, 841, 955, 1174, 1304
HapII CCGG 3 cut(s) 782, 987, 1094
HgaI GACGC 1 cut(s) 1256
Hin1II CATG 4 cut(s) 212, 395, 793, 1133
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 16, 794
HinfI GANTC 3 cut(s) 213, 316, 1343
HpaII CCGG 3 cut(s) 782, 987, 1094
HphI GGTGA 3 cut(s) 770, 838, 1225
Hpy166II GTNNAC 5 cut(s) 256, 787, 913, 1216, 1316
Hpy188I TCNGA 6 cut(s) 83, 547, 623, 658, 721, 895
Hpy188III TCNNGA 8 cut(s) 261, 311, 392, 559, 581, 1079, 1094, 1197
Hpy8I GTNNAC 5 cut(s) 256, 787, 913, 1216, 1316
HpyAV CCTTC 5 cut(s) 164, 621, 686, 1294, 1333
HpyCH4III ACNGT 3 cut(s) 361, 753, 1336
HpyCH4V TGCA 8 cut(s) 12, 386, 716, 773, 881, 1101, 1282, 1358
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 329, 1037, 1126, 1247
HpyF3I CTNAG 4 cut(s) 274, 428, 1121, 1136
Hsp92II CATG 4 cut(s) 212, 395, 793, 1133
KflI GGGWCCC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 1093
Ksp22I TGATCA 3 cut(s) 820, 1044, 1270
Kzo9I GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 463, 785
LweI GCATC 2 cut(s) 725, 1110
MaeI CTAG 1 cut(s) 1375
MaeIII GTNAC 2 cut(s) 278, 1336
MalI GATC 7 cut(s) 80, 822, 1014, 1046, 1054, 1209, 1272
MboI GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
MfeI CAATTG 1 cut(s) 706
MluCI AATT 7 cut(s) 647, 706, 767, 863, 975, 1018, 1141
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 399, 669
MroI TCCGGA 1 cut(s) 1093
MseI TTAA 2 cut(s) 183, 1167
MslI CAYNNNNRTG 2 cut(s) 207, 1190
MspA1I CMGCKG 2 cut(s) 9, 776
MspCI CTTAAG 1 cut(s) 1166
MspI CCGG 3 cut(s) 782, 987, 1094
MspR9I CCNGG 3 cut(s) 246, 988, 1260
MunI CAATTG 1 cut(s) 706
Mva1269I GAATGC 2 cut(s) 1042, 1358
MvaI CCWGG 2 cut(s) 246, 1260
MwoI GCNNNNNNNGC 5 cut(s) 15, 329, 1037, 1126, 1247
NciI CCSGG 1 cut(s) 988
NdeII GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
NlaIII CATG 4 cut(s) 212, 395, 793, 1133
NlaIV GGNNCC 6 cut(s) 337, 338, 410, 669, 997, 1264
NspI RCATGY 1 cut(s) 1133
OliI CACNNNNGTG 1 cut(s) 1190
PaeI GCATGC 1 cut(s) 1133
PagI TCATGA 1 cut(s) 391
PctI GAATGC 2 cut(s) 1042, 1358
PfeI GAWTC 2 cut(s) 316, 1343
PflMI CCANNNNNTGG 2 cut(s) 223, 866
PkrI GCNGC 3 cut(s) 11, 478, 775
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 336
PsiI TTATAA 1 cut(s) 974
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 244, 1258
PspEI GGTNACC 1 cut(s) 278
PspFI CCCAGC 3 cut(s) 332, 776, 1105
PspGI CCWGG 2 cut(s) 244, 1258
PspN4I GGNNCC 6 cut(s) 337, 338, 410, 669, 997, 1264
PspPI GGNCC 5 cut(s) 33, 336, 779, 980, 1303
PspPPI RGGWCCY 1 cut(s) 336
PstNI CAGNNNCTG 2 cut(s) 223, 251
PvuII CAGCTG 2 cut(s) 9, 776
RsaI GTAC 3 cut(s) 765, 848, 914
RsaNI GTAC 3 cut(s) 764, 847, 913
RseI CAYNNNNRTG 2 cut(s) 207, 1190
SaqAI TTAA 2 cut(s) 183, 1167
SatI GCNGC 3 cut(s) 10, 477, 774
Sau3AI GATC 7 cut(s) 78, 820, 1012, 1044, 1052, 1207, 1270
Sau96I GGNCC 5 cut(s) 33, 336, 779, 980, 1303
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 246, 988, 1260
SfaNI GCATC 2 cut(s) 725, 1110
SinI GGWCC 3 cut(s) 33, 336, 980
SmiMI CAYNNNNRTG 2 cut(s) 207, 1190
SmlI CTYRAG 5 cut(s) 259, 311, 602, 797, 1166
SmoI CTYRAG 5 cut(s) 259, 311, 602, 797, 1166
SphI GCATGC 1 cut(s) 1133
Sse9I AATT 7 cut(s) 647, 706, 767, 863, 975, 1018, 1141
SspMI CTAG 1 cut(s) 1375
StyD4I CCNGG 3 cut(s) 244, 986, 1258
TaaI ACNGT 3 cut(s) 361, 753, 1336
TaqI TCGA 1 cut(s) 503
TasI AATT 7 cut(s) 647, 706, 767, 863, 975, 1018, 1141
TatI WGTACW 2 cut(s) 763, 912
TfiI GAWTC 2 cut(s) 316, 1343
Tru1I TTAA 2 cut(s) 183, 1167
Tru9I TTAA 2 cut(s) 183, 1167
TscAI CASTG 4 cut(s) 228, 274, 436, 517
TseI GCWGC 3 cut(s) 9, 476, 773
TspDTI ATGAA 5 cut(s) 480, 602, 640, 806, 915
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 4 cut(s) 228, 274, 436, 517
Van91I CCANNNNNTGG 2 cut(s) 223, 866
Vha464I CTTAAG 1 cut(s) 1166
VpaK11BI GGWCC 3 cut(s) 33, 336, 980
XapI RAATTY 2 cut(s) 647, 863
XceI RCATGY 1 cut(s) 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XspI CTAG 1 cut(s) 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.