Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016052

Physical Location & Seq

Genomic Coordinates Reverse (-)

21223340 .. 21226470

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG211000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGTTCAGCTGCAAAAGCTTATTGTCCAAAAGGACCAAAACCATAAAGAAAAAGAAGAAAAACAAGAGCAAAAACAAGATCAGAAGCAAAAATGTTCCCGCAAAACAAAACCCCATTTGCGAAAAATACCAAGAAGAAGAAGAAGAGATAGAGGAAGAAGAAGATAGTGATGAAGTTGAAGAAGGCTTCAATCTTAAAGCCTCTGCTCCATCTCACACACATGGAGTCCAGCCACTGGGCAATCTCTACCTCAACCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAATCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGATTCTGGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCAACTGTGAGCAAATCATTTTATATCTTTGCAAATCATGAGCCCCTTTGGAGGAACCTTGTGTTGGAAAATCTCGGTGGTAGGCTTCTGTATAATGGCTCTTGGAAATCTACTTACATTGCTGCTCATTACCCTTCATTTGATGTGTCGAATATCTGTGTTTCCGGTTTGAGAGTGAGAGACTTTTATTCTGACTATCTCTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCCGAATGGCTTGAGAGAGATAATATAATCCGAAGAAGGGGCATTTCAGTTGAGGATTTCATTTCCGATTTTGAGGAACCGAATAAGCCTGTGCTGTTGGAAGGGTGTATGGACAATTGGGCTGCATCAGAGAAATGGGATAGAGATTATTTGGTTCAACTGTGTGGTGATGTACGATTTGCAGCTGGGCCGGTGGACATGAAGCTTGAGGACTATTTTAGATATGCTGATCAGGTGAGGGAAGAGAGGCCATTGTACCTTTTTGACCCAAAATTTGGAGAGAAAGTTGCAAGATTGGGTTCGGAGTATGAAGTTCCTGTGTACTTTAGGGAGGACTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGGTATTGTTTCCTCCTGATGTTGTTCCTCCGGGGGTGCATCCCAGTCCAGATGGTGCTGAGGTGGCATGCCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGACTTGGAAAAGGAAACCTATCGAGTGCATTTGTAAGGCTGGGGAGGTGATTTTTGTACCTAATGGTTGGTGGCATTTGGTGATCAACTTGGAGGAATCAATTGCCATTACGCAGAATTATGCTAGCAGGAGTAATTTGTTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGAACGAGAGATCGGGTGAACTTGTATGAGAAGTTTAGAAATGCTATTGAGGCTTCTTTACCTGGAACTATTGATCATTTGTTGCAAAAAGCAGAAGAGAAGAAGGCCCAACAGAGTAAACCCTCCTTCTGGGATACAGTTACAGATTCAAAGGCTGGTGCATTCAAGTTCTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0010029 GO:0010030 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0032259 GO:0034969 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0043985 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1900140 GO:1901363 GO:1901564 GO:1990837 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 F-box F-box-like

Protein Analysis

520

Amino Acids

59.18

Weight (kDa)

5.97

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	104 - 144	3.1e-06	F-box-like
Cupin_8	PF13621	221 - 440	3.5e-20	Cupin-like domain
JmjC	PF02373	327 - 437	2.6e-12	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06550
fragaria_vesca	FvH4_6g21050 FvH4_6g21050
malus_domestica	MD12G1046300.v1.1
prunus_persica	Prupe.7G089800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477431
rosa_laevigata	RLG00000023722
rosa_roxburghii	Rroxscaffold_6G00404160 Rroxscaffold_6G00404640
rosa_rugosa	Rorug03G0160700
rosa_samantha	Rh3AG211000 Rh3BG244400 Rh3CG238200 Rh3DG237900
rosa_wichuraiana	Rw3G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	986
AccB7I	CCANNNNNTGG	2 cut(s)	235, 878
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	1019, 1072
AcsI	RAATTY	1 cut(s)	875
AfaI	GTAC	4 cut(s)	777, 860, 926, 1251
AfiI	CCNNNNNNNGG	8 cut(s)	235, 357, 358, 417, 430, 640, 878, 1512
AflII	CTTAAG	1 cut(s)	1352
AjnI	CCWGG	2 cut(s)	256, 1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AleI	CACNNNNGTG	1 cut(s)	1376
AluBI	AGCT	7 cut(s)	9, 18, 316, 344, 788, 808, 1043
AluI	AGCT	7 cut(s)	9, 18, 316, 344, 788, 808, 1043
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	1019, 1072
AlwNI	CAGNNNCTG	2 cut(s)	235, 263
AoxI	GGCC	6 cut(s)	333, 791, 851, 965, 1358, 1488
ApeKI	GCWGC	4 cut(s)	9, 488, 725, 785
ApoI	RAATTY	1 cut(s)	875
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AspS9I	GGNCC	5 cut(s)	33, 348, 791, 992, 1489
AsuC2I	CCSGG	2 cut(s)	1000, 1107
AsuHPI	GGTGA	5 cut(s)	782, 850, 1252, 1285, 1411
AsuNHI	GCTAGC	1 cut(s)	1316
AvaII	GGWCC	3 cut(s)	33, 348, 992
BanII	GRGCYC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	1134
BbvI	GCAGC	3 cut(s)	475, 712, 797
BccI	CCATC	3 cut(s)	217, 972, 1121
BciT130I	CCWGG	2 cut(s)	258, 1446
BciVI	GTATCC	1 cut(s)	1510
BclI	TGATCA	4 cut(s)	832, 1056, 1275, 1456
BcnI	CCSGG	2 cut(s)	1000, 1107
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	1317, 1561
BfrI	CTTAAG	1 cut(s)	1352
BfuI	GTATCC	1 cut(s)	1510
BisI	GCNGC	4 cut(s)	10, 489, 726, 786
BlsI	GCNGC	4 cut(s)	11, 490, 727, 787
Bme1390I	CCNGG	4 cut(s)	258, 1000, 1107, 1446
Bme18I	GGWCC	3 cut(s)	33, 348, 992
BmgT120I	GGNCC	5 cut(s)	33, 348, 791, 992, 1489
BmiI	GGNNCC	5 cut(s)	349, 350, 422, 681, 1009
BmrFI	CCNGG	4 cut(s)	258, 1000, 1107, 1446
BmrI	ACTGGG	2 cut(s)	245, 1113
BmsI	GCATC	2 cut(s)	737, 1123
BmtI	GCTAGC	1 cut(s)	1320
BmuI	ACTGGG	2 cut(s)	245, 1113
Bpu10I	CCTNAGC	2 cut(s)	286, 1134
BpuEI	CTTGAG	4 cut(s)	256, 344, 635, 830
BpuMI	CCSGG	2 cut(s)	1000, 1107
BsaJI	CCNNGG	2 cut(s)	256, 1106
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	4 cut(s)	873, 903, 926, 956
Bsc4I	CCNNNNNNNGG	8 cut(s)	235, 357, 358, 417, 430, 640, 878, 1512
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	240, 286, 1119
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	258, 1446
BseDI	CCNNGG	2 cut(s)	256, 1106
BseGI	GGATG	1 cut(s)	1114
BseLI	CCNNNNNNNGG	8 cut(s)	235, 357, 358, 417, 430, 640, 878, 1512
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	1125
BseNI	ACTGG	3 cut(s)	240, 286, 1119
BseXI	GCAGC	3 cut(s)	475, 712, 797
BseYI	CCCAGC	3 cut(s)	344, 788, 1232
BshFI	GGCC	6 cut(s)	335, 793, 853, 967, 1360, 1490
BsiSI	CCGG	4 cut(s)	531, 794, 999, 1106
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	8 cut(s)	235, 357, 358, 417, 430, 640, 878, 1512
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	2 cut(s)	1054, 1544
BsnI	GGCC	6 cut(s)	335, 793, 853, 967, 1360, 1490
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	6 cut(s)	335, 793, 853, 967, 1360, 1490
BspCNI	CTCAG	1 cut(s)	1126
BspHI	TCATGA	2 cut(s)	403, 1170
BspLI	GGNNCC	5 cut(s)	349, 350, 422, 681, 1009
BspOI	GCTAGC	1 cut(s)	1320
BspPI	GGATC	2 cut(s)	1019, 1072
BspTI	CTTAAG	1 cut(s)	1352
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	240, 286, 1119
BssAI	RCCGGY	1 cut(s)	793
BssECI	CCNNGG	2 cut(s)	256, 1106
BssMI	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Bst2UI	CCWGG	2 cut(s)	258, 1446
Bst4CI	ACNGT	3 cut(s)	373, 765, 1522
Bst6I	CTCTTC	4 cut(s)	138, 572, 840, 1473
BstAFI	CTTAAG	1 cut(s)	1352
BstC8I	GCNNGC	3 cut(s)	1144, 1318, 1369
BstDEI	CTNAG	2 cut(s)	286, 1134
BstF5I	GGATG	1 cut(s)	1114
BstKTI	GATC	8 cut(s)	81, 835, 1027, 1059, 1067, 1278, 1396, 1459
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 341, 1049, 1139, 1433
BstNI	CCWGG	2 cut(s)	258, 1446
BstNSI	RCATGY	1 cut(s)	1146
BstSCI	CCNGG	4 cut(s)	256, 998, 1105, 1444
BstV1I	GCAGC	3 cut(s)	475, 712, 797
BstXI	CCANNNNNNTGG	1 cut(s)	1375
BsuI	GTATCC	1 cut(s)	1510
BsuRI	GGCC	6 cut(s)	335, 793, 853, 967, 1360, 1490
BtsCI	GGATG	1 cut(s)	1114
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	233, 279, 1059
Cac8I	GCNNGC	3 cut(s)	1144, 1318, 1369
CaiI	CAGNNNCTG	2 cut(s)	235, 263
CciI	TCATGA	2 cut(s)	403, 1170
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	5 cut(s)	33, 348, 791, 992, 1489
Csp6I	GTAC	4 cut(s)	776, 859, 925, 1250
CviAII	CATG	5 cut(s)	221, 404, 802, 1143, 1171
CviQI	GTAC	4 cut(s)	776, 859, 925, 1250
DdeI	CTNAG	2 cut(s)	286, 1134
DpnI	GATC	8 cut(s)	80, 834, 1026, 1058, 1066, 1277, 1395, 1458
DpnII	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Eam1104I	CTCTTC	4 cut(s)	138, 572, 840, 1473
EarI	CTCTTC	4 cut(s)	138, 572, 840, 1473
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	33, 348, 992
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	256, 1444
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	5 cut(s)	224, 407, 805, 1146, 1174
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	220, 403, 801, 1142, 1170
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	4 cut(s)	832, 1056, 1275, 1456
Fnu4HI	GCNGC	4 cut(s)	10, 489, 726, 786
FokI	GGATG	1 cut(s)	1101
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	4 cut(s)	10, 489, 726, 786
FspBI	CTAG	2 cut(s)	1317, 1561
GluI	GCNGC	4 cut(s)	10, 489, 726, 786
GsaI	CCCAGC	3 cut(s)	348, 792, 1236
HaeIII	GGCC	6 cut(s)	335, 793, 853, 967, 1360, 1490
HapII	CCGG	4 cut(s)	531, 794, 999, 1106
Hin1II	CATG	5 cut(s)	224, 407, 805, 1146, 1174
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	2 cut(s)	16, 806
HinfI	GANTC	4 cut(s)	225, 328, 1289, 1529
HpaII	CCGG	4 cut(s)	531, 794, 999, 1106
HphI	GGTGA	5 cut(s)	782, 850, 1252, 1285, 1411
Hpy166II	GTNNAC	5 cut(s)	268, 799, 925, 1402, 1502
Hpy188I	TCNGA	6 cut(s)	83, 559, 635, 670, 733, 907
Hpy188III	TCNNGA	9 cut(s)	273, 323, 404, 571, 593, 1091, 1124, 1171, 1383
Hpy8I	GTNNAC	5 cut(s)	268, 799, 925, 1402, 1502
HpyAV	CCTTC	6 cut(s)	176, 510, 633, 698, 1480, 1519
HpyCH4III	ACNGT	3 cut(s)	373, 765, 1522
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 341, 1049, 1139, 1433
HpyF3I	CTNAG	2 cut(s)	286, 1134
Hsp92II	CATG	5 cut(s)	224, 407, 805, 1146, 1174
KflI	GGGWCCC	1 cut(s)	348
Ksp22I	TGATCA	4 cut(s)	832, 1056, 1275, 1456
Kzo9I	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	3 cut(s)	475, 712, 797
LweI	GCATC	2 cut(s)	737, 1123
MaeI	CTAG	2 cut(s)	1317, 1561
MaeIII	GTNAC	1 cut(s)	1522
MalI	GATC	8 cut(s)	80, 834, 1026, 1058, 1066, 1277, 1395, 1458
MboI	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
MfeI	CAATTG	2 cut(s)	718, 1293
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	8 cut(s)	718, 875, 987, 1030, 1158, 1293, 1309, 1327
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	2 cut(s)	411, 681
MseI	TTAA	2 cut(s)	195, 1353
MslI	CAYNNNNRTG	2 cut(s)	219, 1376
MspA1I	CMGCKG	2 cut(s)	9, 788
MspCI	CTTAAG	1 cut(s)	1352
MspI	CCGG	4 cut(s)	531, 794, 999, 1106
MspR9I	CCNGG	4 cut(s)	258, 1000, 1107, 1446
MunI	CAATTG	2 cut(s)	718, 1293
Mva1269I	GAATGC	2 cut(s)	1054, 1544
MvaI	CCWGG	2 cut(s)	258, 1446
MwoI	GCNNNNNNNGC	5 cut(s)	15, 341, 1049, 1139, 1433
NciI	CCSGG	2 cut(s)	1000, 1107
NdeII	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
NheI	GCTAGC	1 cut(s)	1316
NlaIII	CATG	5 cut(s)	224, 407, 805, 1146, 1174
NlaIV	GGNNCC	5 cut(s)	349, 350, 422, 681, 1009
NspI	RCATGY	1 cut(s)	1146
OliI	CACNNNNGTG	1 cut(s)	1376
PaeI	GCATGC	1 cut(s)	1146
PagI	TCATGA	2 cut(s)	403, 1170
PctI	GAATGC	2 cut(s)	1054, 1544
PfeI	GAWTC	3 cut(s)	328, 1289, 1529
PflMI	CCANNNNNTGG	2 cut(s)	235, 878
PkrI	GCNGC	4 cut(s)	11, 490, 727, 787
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	348
PsiI	TTATAA	1 cut(s)	986
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	256, 1444
PspFI	CCCAGC	3 cut(s)	344, 788, 1232
PspGI	CCWGG	2 cut(s)	256, 1444
PspN4I	GGNNCC	5 cut(s)	349, 350, 422, 681, 1009
PspPI	GGNCC	5 cut(s)	33, 348, 791, 992, 1489
PspPPI	RGGWCCY	1 cut(s)	348
PstNI	CAGNNNCTG	2 cut(s)	235, 263
PvuII	CAGCTG	2 cut(s)	9, 788
RsaI	GTAC	4 cut(s)	777, 860, 926, 1251
RsaNI	GTAC	4 cut(s)	776, 859, 925, 1250
RseI	CAYNNNNRTG	2 cut(s)	219, 1376
SaqAI	TTAA	2 cut(s)	195, 1353
SatI	GCNGC	4 cut(s)	10, 489, 726, 786
Sau3AI	GATC	8 cut(s)	78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Sau96I	GGNCC	5 cut(s)	33, 348, 791, 992, 1489
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	4 cut(s)	258, 1000, 1107, 1446
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	737, 1123
SinI	GGWCC	3 cut(s)	33, 348, 992
SmiMI	CAYNNNNRTG	2 cut(s)	219, 1376
SmlI	CTYRAG	5 cut(s)	271, 323, 614, 809, 1352
SmoI	CTYRAG	5 cut(s)	271, 323, 614, 809, 1352
SphI	GCATGC	1 cut(s)	1146
Sse9I	AATT	8 cut(s)	718, 875, 987, 1030, 1158, 1293, 1309, 1327
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	1317, 1561
StyD4I	CCNGG	4 cut(s)	256, 998, 1105, 1444
TaaI	ACNGT	3 cut(s)	373, 765, 1522
TaqI	TCGA	2 cut(s)	515, 1215
TasI	AATT	8 cut(s)	718, 875, 987, 1030, 1158, 1293, 1309, 1327
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	3 cut(s)	328, 1289, 1529
Tru1I	TTAA	2 cut(s)	195, 1353
Tru9I	TTAA	2 cut(s)	195, 1353
TscAI	CASTG	3 cut(s)	240, 286, 1059
TseI	GCWGC	4 cut(s)	9, 488, 725, 785
TspDTI	ATGAA	8 cut(s)	186, 492, 614, 652, 818, 927, 1159, 1187
TspRI	CASTG	3 cut(s)	240, 286, 1059
Van91I	CCANNNNNTGG	2 cut(s)	235, 878
Vha464I	CTTAAG	1 cut(s)	1352
VpaK11BI	GGWCC	3 cut(s)	33, 348, 992
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	1 cut(s)	1146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	975
XspI	CTAG	2 cut(s)	1317, 1561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.