FvH4_6g21782

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018458
Physical Location & Seq
Reverse (-)
15362594 .. 15363143
550 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21782.t1

Sequence Viewer

Length: 462 bp
ATGTTCAGCTCCTCATCCAGGTCTACTCGAAGCTCATGCAATCCCAACAGATCCCCCATCACAAACCCCATGTCCACTACCTTAGCCCCATACATGACCTCTACCTTCCAGCCCTCAGGCCTGAACCATCATATATGTAGTACCTGTTTCAGGGCCTTCGCTACTTTTCAGGCCTCGGTCGCACACCAGGCCGCCCACCGCCAACAAACGAAAGAGTTCTGTACTCATCCGGTCTGTATGCAACAAGCTTTTCATGATGGGGCTCTGCCGCCACCGGAATCCATCGGCTGGGTAACTCCGGCTGAAGGATCCAGCTCGGAAAACAAAAGAAGGAAGGTTCTGAAAGTGATGCCAAGCGCTGAGCTCACTTTGGCGACCGGAGCTGCGCCAGATATGTTGCTTGAAATGGATGAATCTGACAATCTGGAGTTTTATCTTAAAATCGTCACTAACAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.83

Weight (kDa)

6.58

Isoelectric Point (pI)

69.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018458)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21782
malus_domestica MD04G1139700.v1.1 MD12G1054400.v1.1 MD14G1053400.v1.1
prunus_persica Prupe.7G082300_v2.0.a1
rosa_laevigata RLG00000023601
rosa_multiflora Rmu_sc0012914.1_g000004
rosa_roxburghii Rroxscaffold_6G00402610
rosa_rugosa Rorug03G0171600
rosa_samantha Rh3DG247600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 23
AciI CCGC 3 cut(s) 192, 199, 269
AclWI GGATC 3 cut(s) 45, 303, 316
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 142, 223
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 18, 150, 288, 305
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 2 cut(s) 17, 186
AluBI AGCT 6 cut(s) 9, 33, 248, 315, 364, 383
AluI AGCT 6 cut(s) 9, 33, 248, 315, 364, 383
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 3 cut(s) 45, 303, 316
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 4 cut(s) 118, 153, 171, 189
ApeKI GCWGC 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 359, 388
AspS9I GGNCC 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 115
BamHI GGATCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 265, 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 370
BccI CCATC 4 cut(s) 65, 135, 251, 290
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 2 cut(s) 19, 188
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 3 cut(s) 192, 269, 384
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 3 cut(s) 193, 270, 385
Bme1390I CCNGG 2 cut(s) 19, 188
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 19, 188
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 3 cut(s) 229, 274, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 150, 288, 305
Bse21I CCTNAGG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 19, 188
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 3 cut(s) 14, 226, 415
BseLI CCNNNNNNNGG 4 cut(s) 18, 150, 288, 305
BseMII CTCAG 2 cut(s) 129, 351
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 288
Bsh1285I CGRYCG 2 cut(s) 180, 378
BshFI GGCC 4 cut(s) 120, 155, 173, 191
BsiEI CGRYCG 2 cut(s) 180, 378
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 4 cut(s) 230, 275, 299, 378
BslI CCNNNNNNNGG 4 cut(s) 18, 150, 288, 305
BsnI GGCC 4 cut(s) 120, 155, 173, 191
Bsp1286I GDGCHC 2 cut(s) 265, 366
Bsp143I GATC 2 cut(s) 50, 308
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 3 cut(s) 192, 199, 269
BspANI GGCC 4 cut(s) 120, 155, 173, 191
BspCNI CTCAG 2 cut(s) 128, 352
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 3 cut(s) 45, 303, 316
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 50, 308
Bst2UI CCWGG 2 cut(s) 19, 188
BstDEI CTNAG 3 cut(s) 82, 115, 360
BstENI CCTNNNNNAGG 2 cut(s) 16, 148
BstF5I GGATG 3 cut(s) 14, 226, 415
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 359, 388
BstKTI GATC 2 cut(s) 53, 311
BstMBI GATC 2 cut(s) 50, 308
BstMCI CGRYCG 2 cut(s) 180, 378
BstMWI GCNNNNNNNGC 3 cut(s) 179, 188, 380
BstNI CCWGG 2 cut(s) 19, 188
BstSCI CCNGG 2 cut(s) 17, 186
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 50, 308
BstYI RGATCY 2 cut(s) 50, 308
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 4 cut(s) 120, 155, 173, 191
BtsCI GGATG 3 cut(s) 14, 226, 415
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 359, 388
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 141, 222
CviAII CATG 4 cut(s) 36, 70, 94, 254
CviQI GTAC 2 cut(s) 141, 222
DdeI CTNAG 3 cut(s) 82, 115, 360
DpnI GATC 2 cut(s) 52, 310
DpnII GATC 2 cut(s) 50, 308
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 2 cut(s) 120, 173
Eco24I GRGCYC 2 cut(s) 265, 366
Eco47III AGCGCT 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 2 cut(s) 16, 148
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 17, 186
EcoT38I GRGCYC 2 cut(s) 265, 366
FaeI CATG 4 cut(s) 39, 73, 97, 257
FatI CATG 4 cut(s) 35, 69, 93, 253
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 192, 269, 384
FokI GGATG 2 cut(s) 213, 422
FriOI GRGCYC 2 cut(s) 265, 366
Fsp4HI GCNGC 3 cut(s) 192, 269, 384
GlaI GCGC 2 cut(s) 358, 387
GluI GCNGC 3 cut(s) 192, 269, 384
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 4 cut(s) 120, 155, 173, 191
HapII CCGG 4 cut(s) 230, 275, 299, 378
HhaI GCGC 2 cut(s) 359, 388
Hin1II CATG 4 cut(s) 39, 73, 97, 257
Hin6I GCGC 2 cut(s) 357, 386
HinP1I GCGC 2 cut(s) 357, 386
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 278, 413
HpaII CCGG 4 cut(s) 230, 275, 299, 378
Hpy166II GTNNAC 2 cut(s) 24, 75
Hpy188I TCNGA 3 cut(s) 319, 342, 418
Hpy188III TCNNGA 2 cut(s) 254, 425
Hpy8I GTNNAC 2 cut(s) 24, 75
HpyAV CCTTC 5 cut(s) 115, 166, 299, 324, 328
HpyCH4V TGCA 2 cut(s) 39, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 188, 380
HpyF3I CTNAG 3 cut(s) 82, 115, 360
Hsp92II CATG 4 cut(s) 39, 73, 97, 257
HspAI GCGC 2 cut(s) 357, 386
Kzo9I GATC 2 cut(s) 50, 308
LmnI GCTCC 2 cut(s) 14, 380
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 292, 445
MalI GATC 2 cut(s) 52, 310
MboI GATC 2 cut(s) 50, 308
MflI RGATCY 2 cut(s) 50, 308
MhlI GDGCHC 2 cut(s) 265, 366
MnlI CCTC 4 cut(s) 22, 109, 124, 184
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 438
MspI CCGG 4 cut(s) 230, 275, 299, 378
MspR9I CCNGG 2 cut(s) 19, 188
MvaI CCWGG 2 cut(s) 19, 188
MwoI GCNNNNNNNGC 3 cut(s) 179, 188, 380
NdeII GATC 2 cut(s) 50, 308
NlaIII CATG 4 cut(s) 39, 73, 97, 257
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 445
PagI TCATGA 1 cut(s) 253
PceI AGGCCT 2 cut(s) 120, 173
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 278, 413
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 3 cut(s) 193, 270, 385
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 17, 186
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 2 cut(s) 17, 186
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 153
PsuI RGATCY 2 cut(s) 50, 308
RsaI GTAC 2 cut(s) 142, 223
RsaNI GTAC 2 cut(s) 141, 222
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 3 cut(s) 192, 269, 384
Sau3AI GATC 2 cut(s) 50, 308
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 19, 188
SduI GDGCHC 2 cut(s) 265, 366
SfaNI GCATC 1 cut(s) 339
SseBI AGGCCT 2 cut(s) 120, 173
SsiI CCGC 3 cut(s) 192, 199, 269
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 2 cut(s) 120, 173
StyD4I CCNGG 2 cut(s) 17, 186
TaqI TCGA 1 cut(s) 28
TaqII GACCGA 1 cut(s) 166
TatI WGTACW 1 cut(s) 221
TauI GCSGC 2 cut(s) 194, 271
TfiI GAWTC 2 cut(s) 278, 413
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 242, 426
Van91I CCANNNNNTGG 1 cut(s) 288
XagI CCTNNNNNAGG 2 cut(s) 16, 148
XmiI GTMKAC 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.