Rroxscaffold_6G00402610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018458
Physical Location & Seq
Forward (+)
25063745 .. 25065113
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402610.1

Sequence Viewer

Length: 441 bp
ATGGGGCTAAGAAATTCGGCTGATCTACCGGTCCGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCCTTTGTCGGAGACTTGTGGGATTGGGTATAAAGGCGAGGCTTTCCTCATATGTTGTTGGGGCCTTCCCTAACGTTCTGGCCTTAGCACGGCATCAAAATGCGCACCGGCATGAACGCAATGATATCCTTGCTCGTGTGGCTCGCATGCAACAATCTGTAGACAATAGGGTTCTTGCTTCACCAGAAGTATCGGTTAGCTGGGTTCATCCGGCTGAGGGTGAGGGATCGAACCGCGGTTACAAAAGACAGAAGGCTTTGAAAGTGATGCCAAGTGCTGAGCTCACATTCGAAACCGGGGCTGCACTGGCCATTTTGCTTGAAGTGGATGAATCTGACAAGAGAAATGACCAGATGTTGTATCTAAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.66

Weight (kDa)

9.9

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018458)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21782
malus_domestica MD04G1139700.v1.1 MD12G1054400.v1.1 MD14G1053400.v1.1
prunus_persica Prupe.7G082300_v2.0.a1
rosa_laevigata RLG00000023601
rosa_multiflora Rmu_sc0012914.1_g000004
rosa_roxburghii Rroxscaffold_6G00402610
rosa_rugosa Rorug03G0171600
rosa_samantha Rh3DG247600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 301, 303
AclI AACGTT 1 cut(s) 141
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 35, 156, 284
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 328, 389
AluBI AGCT 2 cut(s) 267, 349
AluI AGCT 2 cut(s) 267, 349
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 301
AoxI GGCC 4 cut(s) 67, 129, 147, 375
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 13
AsiGI ACCGGT 1 cut(s) 28
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 31, 129
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 240, 299
AsuII TTCGAA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 377
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 351
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 369
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 129
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 169, 324
Bpu10I CCTNAGC 2 cut(s) 151, 282
Bpu1102I GCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 34, 301, 363
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 156, 284
Bse118I RCCGGY 2 cut(s) 28, 174
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 34, 301, 363
BseGI GGATG 2 cut(s) 274, 400
BseLI CCNNNNNNNGG 3 cut(s) 35, 156, 284
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 273, 336
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 69, 131, 149, 377
BshTI ACCGGT 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 4 cut(s) 29, 175, 278, 363
BslI CCNNNNNNNGG 3 cut(s) 35, 156, 284
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 4 cut(s) 69, 131, 149, 377
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 22, 293
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 2 cut(s) 301, 303
BspANI GGCC 4 cut(s) 69, 131, 149, 377
BspCNI CTCAG 2 cut(s) 274, 337
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 28, 174
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 2 cut(s) 28, 174
BssECI CCNNGG 3 cut(s) 34, 301, 363
BssMI GATC 2 cut(s) 22, 293
BssSI CACGAG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 438
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 211, 215
BstDEI CTNAG 4 cut(s) 8, 151, 282, 345
BstDSI CCRYGG 2 cut(s) 34, 301
BstF5I GGATG 2 cut(s) 274, 400
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 25, 296
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 22, 293
BstMWI GCNNNNNNNGC 2 cut(s) 206, 374
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 355
BsuRI GGCC 4 cut(s) 69, 131, 149, 377
BtgI CCRYGG 2 cut(s) 34, 301
BtsCI GGATG 2 cut(s) 274, 400
BtsIMutI CAGTG 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 211, 215
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 2 cut(s) 28, 174
Cfr13I GGNCC 2 cut(s) 31, 129
Cfr42I CCGCGG 1 cut(s) 304
CpoI CGGWCCG 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 28
CspI CGGWCCG 1 cut(s) 31
CviAII CATG 2 cut(s) 179, 214
DdeI CTNAG 4 cut(s) 8, 151, 282, 345
DpnI GATC 2 cut(s) 24, 295
DpnII GATC 2 cut(s) 22, 293
EaeI YGGCCR 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 129
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 2 cut(s) 182, 217
FaiI YATR 5 cut(s) 98, 118, 120, 180, 215
FatI CATG 2 cut(s) 178, 213
FauNDI CATATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 261, 407
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 369
FspAI RTGCGCAY 1 cut(s) 171
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 4 cut(s) 69, 131, 149, 377
HapII CCGG 4 cut(s) 29, 175, 278, 363
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 182, 217
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 1 cut(s) 398
HpaII CCGG 4 cut(s) 29, 175, 278, 363
HphI GGTGA 2 cut(s) 240, 299
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 78, 403
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 142, 313
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 217, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 374
HpyF3I CTNAG 4 cut(s) 8, 151, 282, 345
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 182, 217
HspAI GCGC 1 cut(s) 170
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 2 cut(s) 22, 293
LpnPI CCDG 9 cut(s) 42, 131, 188, 253, 264, 291, 359, 376, 431
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 169, 324
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 24, 295
MboI GATC 2 cut(s) 22, 293
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 9 cut(s) 32, 38, 44, 50, 56, 99, 124, 277, 283
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MslI CAYNNNNRTG 2 cut(s) 165, 177
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 4 cut(s) 29, 175, 278, 363
MspR9I CCNGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 206, 374
NciI CCSGG 1 cut(s) 364
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 22, 293
NlaIII CATG 2 cut(s) 182, 217
NlaIV GGNNCC 1 cut(s) 130
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 357
PaeI GCATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 31, 129
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
RseI CAYNNNNRTG 2 cut(s) 165, 177
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 351
SacII CCGCGG 1 cut(s) 304
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 22, 293
Sau96I GGNCC 2 cut(s) 31, 129
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 351
SetI ASST 8 cut(s) 43, 49, 55, 61, 67, 144, 269, 351
SfaNI GCATC 2 cut(s) 169, 324
SfcI CTRYAG 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 357
SgrBI CCGCGG 1 cut(s) 304
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 165, 177
SphI GCATGC 1 cut(s) 217
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 301, 303
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 296, 357
TasI AATT 1 cut(s) 13
TfiI GAWTC 1 cut(s) 398
TscAI CASTG 1 cut(s) 378
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 195, 263, 411
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.