Rh3DG247600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018458
Physical Location & Seq
Reverse (-)
24298704 .. 24299147
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG247600.1

Sequence Viewer

Length: 444 bp
ATGTTCAGCTTCTCGAACTCTTCTGCAAGCTCAAGAAACCCCAACACCAGCTCCATTCCACCTATCCTAGCCGCATGCTTGTCCCCGAGCTTTGAGCCCTCAAGCCATAATAATTACTTGTGCAATCTCTGTTTCAGGGCCTTCCCTAACGTTCTGGCCTTAGCACAGCATCAAAATGCGCACCGGCATGAACGAAATGACATTCTTGCTCGTGTGGCTCGCATGCAACAATCTGTTGACAATAGGGTTCTTACTTCACCAGAAGTATCGGTTAGCTGGGTACATCCGGCTGAGGGATCGAACCGCGGTTACAAAAGACAGAAGGTTTTGAAAGTGATGCCGAGTGTTGAGCTCACATTGGAAACCGGGGCTGCGCCGGCCATTTTGCTTGAAGTGGATGAATCTGACAAGAGAAATGACCTGGAGTTGTATCTAGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.36

Weight (kDa)

6.51

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018458)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21782
malus_domestica MD04G1139700.v1.1 MD12G1054400.v1.1 MD14G1053400.v1.1
prunus_persica Prupe.7G082300_v2.0.a1
rosa_laevigata RLG00000023601
rosa_multiflora Rmu_sc0012914.1_g000004
rosa_roxburghii Rroxscaffold_6G00402610
rosa_rugosa Rorug03G0171600
rosa_samantha Rh3DG247600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
AccII CGCG 1 cut(s) 306
AciI CCGC 3 cut(s) 72, 304, 306
AclI AACGTT 1 cut(s) 150
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 378
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 331, 392
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 6 cut(s) 9, 30, 51, 90, 276, 352
AluI AGCT 6 cut(s) 9, 30, 51, 90, 276, 352
Alw21I GWGCWC 1 cut(s) 354
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 3 cut(s) 138, 156, 378
ApeKI GCWGC 1 cut(s) 371
AspLEI GCGC 2 cut(s) 181, 376
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 85
BanII GRGCYC 2 cut(s) 99, 354
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 2 cut(s) 68, 434
BisI GCNGC 2 cut(s) 72, 372
BlsI GCNGC 2 cut(s) 73, 373
Bme1390I CCNGG 2 cut(s) 367, 422
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 367, 422
BmsI GCATC 2 cut(s) 178, 327
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 160, 291
BpuEI CTTGAG 2 cut(s) 16, 85
BpuMI CCSGG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 304, 366
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 2 cut(s) 183, 376
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 304, 366
BseGI GGATG 2 cut(s) 283, 403
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 140, 158, 380
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 184, 287, 366, 377
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 140, 158, 380
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 99, 354
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 3 cut(s) 72, 304, 306
BspANI GGCC 3 cut(s) 140, 158, 380
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 306
BspPI GGATC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 183, 376
BssAI RCCGGY 2 cut(s) 183, 376
BssECI CCNNGG 2 cut(s) 304, 366
BssMI GATC 1 cut(s) 296
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 5 cut(s) 28, 76, 220, 224, 378
BstDEI CTNAG 2 cut(s) 160, 291
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 283, 403
BstFNI CGCG 1 cut(s) 306
BstHHI GCGC 2 cut(s) 181, 376
BstKTI GATC 1 cut(s) 299
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 215, 377
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 2 cut(s) 78, 226
BstSCI CCNGG 2 cut(s) 365, 420
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 3 cut(s) 140, 158, 380
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 283, 403
Cac8I GCNNGC 5 cut(s) 28, 76, 220, 224, 378
CfoI GCGC 2 cut(s) 181, 376
Cfr10I RCCGGY 2 cut(s) 183, 376
Cfr13I GGNCC 1 cut(s) 138
Cfr42I CCGCGG 1 cut(s) 307
Csp6I GTAC 1 cut(s) 281
CviAII CATG 3 cut(s) 75, 188, 223
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 160, 291
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 352
Eco24I GRGCYC 2 cut(s) 99, 354
Eco53kI GAGCTC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 420
EcoT38I GRGCYC 2 cut(s) 99, 354
FaeI CATG 3 cut(s) 78, 191, 226
FaiI YATR 4 cut(s) 76, 108, 189, 224
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 74, 187, 222
Fnu4HI GCNGC 2 cut(s) 72, 372
FokI GGATG 2 cut(s) 270, 410
FriOI GRGCYC 2 cut(s) 99, 354
Fsp4HI GCNGC 2 cut(s) 72, 372
FspAI RTGCGCAY 1 cut(s) 180
FspBI CTAG 2 cut(s) 68, 434
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 2 cut(s) 180, 375
GluI GCNGC 2 cut(s) 72, 372
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 3 cut(s) 140, 158, 380
HapII CCGG 4 cut(s) 184, 287, 366, 377
HhaI GCGC 2 cut(s) 181, 376
Hin1II CATG 3 cut(s) 78, 191, 226
Hin6I GCGC 2 cut(s) 179, 374
HinP1I GCGC 2 cut(s) 179, 374
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 401
HpaII CCGG 4 cut(s) 184, 287, 366, 377
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 3 cut(s) 13, 33, 434
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 151, 316
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 26, 123, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 377
HpyF3I CTNAG 2 cut(s) 160, 291
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 78, 191, 226
HspAI GCGC 2 cut(s) 179, 374
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 178, 327
MaeI CTAG 2 cut(s) 68, 434
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 99, 354
MluCI AATT 1 cut(s) 112
MnlI CCTC 2 cut(s) 109, 286
MroNI GCCGGC 1 cut(s) 376
MslI CAYNNNNRTG 2 cut(s) 174, 186
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 4 cut(s) 184, 287, 366, 377
MspR9I CCNGG 2 cut(s) 367, 422
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 215, 377
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 367
NdeII GATC 1 cut(s) 296
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 78, 191, 226
NmeAIII GCCGAG 1 cut(s) 366
NsbI TGCGCA 1 cut(s) 180
NspI RCATGY 2 cut(s) 78, 226
PaeI GCATGC 2 cut(s) 78, 226
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 73, 373
Psp124BI GAGCTC 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 420
PspPI GGNCC 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 293, 325
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 174, 186
SacI GAGCTC 1 cut(s) 354
SacII CCGCGG 1 cut(s) 307
SatI GCNGC 2 cut(s) 72, 372
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 367, 422
SduI GDGCHC 2 cut(s) 99, 354
SfaNI GCATC 2 cut(s) 178, 327
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 174, 186
SmlI CTYRAG 2 cut(s) 31, 100
SmoI CTYRAG 2 cut(s) 31, 100
SphI GCATGC 2 cut(s) 78, 226
Sse9I AATT 1 cut(s) 112
SsiI CCGC 3 cut(s) 72, 304, 306
SspMI CTAG 2 cut(s) 68, 434
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 365, 420
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 14, 299
TasI AATT 1 cut(s) 112
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 401
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 204, 414
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 2 cut(s) 78, 226
XspI CTAG 2 cut(s) 68, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.