Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018458

Physical Location & Seq

Genomic Coordinates Forward (+)

25834364 .. 25837036

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTCCGGCGACTAATTGGCTATCCTTCTCCTTAATGTCCCCCGTGGAAATGCTGCGGTCCTCCTCCGAGTCTGAGTCTCCCTTCGCTCAGGCTTACAATACTTCCGCTGTTACTGCTCCCTCTCCTCATTACTACCTCGACAACTTCTACTCTAACTGCTGGACGAACTCGAAATCCAAAGTGTTCTACACAGAATGTGAGGAAGACCACCACACCAAACAGACCCACTGTGATTCGCTGGTGAGCTTCATCGACCCACAAACTCAGAACCAGTCAATTCCCAAGCTCGAGGACTTTCTCGGTGACTCCATGCTCCTCATCCAACTCTACTCGAGGCTCATGCAATCCCAACAGATGCTCCTTCACAGACCCCATTTCCTCTACCTTTGCTCCATACATGACCTCTACCTTCGAGCCATATCAAGCCTGAACAGTCACATCTGCAGTACCTGCTTCCGGGCCTTGGCTACTGTTCAGGCCTTAGTAGCGCAACAGGCCTCCCACCGCCAACAAATGAACGATTTCTGTACTCGTATGGTTCATGTGCAACAAGCTGTTCGTGATGAGGTTCTGCCGCCACCAGAATCCGTCAGCTGGTTAACTGCGGCTGACGGATCCAGCTCTGGAAACAAGAGAAGGAAGGTTCTGAAACTGAAAGTGATGCCGAGTGCTGAGCTCACTTTGGCAACCTGGGCTGCGCCGGATGTTTTGCTTGATATTGATGAATCGGACGATCTGGAGTTTTATCTTAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

28.72

Weight (kDa)

5.63

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21782
malus_domestica	MD04G1139700.v1.1 MD12G1054400.v1.1 MD14G1053400.v1.1
prunus_persica	Prupe.7G082300_v2.0.a1
rosa_laevigata	RLG00000023601
rosa_multiflora	Rmu_sc0012914.1_g000004
rosa_roxburghii	Rroxscaffold_6G00402610
rosa_rugosa	Rorug03G0171600
rosa_samantha	Rh3DG247600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	461
AciI	CCGC	5 cut(s)	58, 108, 508, 578, 608
AclWI	GGATC	2 cut(s)	612, 625
AfaI	GTAC	2 cut(s)	451, 532
AfiI	CCNNNNNNNGG	3 cut(s)	459, 466, 597
AjnI	CCWGG	1 cut(s)	692
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	249, 289, 557, 597, 624, 679
AluI	AGCT	6 cut(s)	249, 289, 557, 597, 624, 679
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	612, 625
AlwNI	CAGNNNCTG	1 cut(s)	453
Ama87I	CYCGRG	2 cut(s)	290, 334
AoxI	GGCC	3 cut(s)	462, 480, 498
ApeKI	GCWGC	2 cut(s)	55, 698
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	493, 703
AspS9I	GGNCC	2 cut(s)	60, 462
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	256, 317
AvaI	CYCGRG	2 cut(s)	290, 334
AvaII	GGWCC	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	2 cut(s)	42, 685
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	56, 578, 609, 699
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	4 cut(s)	57, 579, 610, 700
Bme1390I	CCNGG	2 cut(s)	461, 694
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	2 cut(s)	290, 334
BmgT120I	GGNCC	2 cut(s)	60, 462
BmiI	GGNNCC	2 cut(s)	6, 619
BmrFI	CCNGG	2 cut(s)	461, 694
BmsI	GCATC	2 cut(s)	348, 654
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	45, 465, 693
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 466, 597
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	45, 465, 693
BseGI	GGATG	2 cut(s)	321, 712
BseLI	CCNNNNNNNGG	3 cut(s)	459, 466, 597
BseMII	CTCAG	4 cut(s)	66, 104, 281, 666
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	3 cut(s)	55, 117, 308
BseXI	GCAGC	2 cut(s)	42, 685
BshFI	GGCC	3 cut(s)	464, 482, 500
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	2 cut(s)	290, 334
BsiSI	CCGG	3 cut(s)	8, 460, 704
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	459, 466, 597
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	464, 482, 500
BsoBI	CYCGRG	2 cut(s)	290, 334
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	617, 736
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	5 cut(s)	58, 108, 508, 578, 608
BspANI	GGCC	3 cut(s)	464, 482, 500
BspCNI	CTCAG	4 cut(s)	67, 103, 280, 667
BspLI	GGNNCC	2 cut(s)	6, 619
BspMAI	CTGCAG	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	612, 625
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	45, 465, 693
BssMI	GATC	2 cut(s)	617, 736
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	694
Bst4CI	ACNGT	4 cut(s)	233, 437, 475, 759
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstDEI	CTNAG	5 cut(s)	75, 90, 267, 484, 675
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	321, 712
BstHHI	GCGC	2 cut(s)	493, 703
BstKTI	GATC	2 cut(s)	620, 739
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	617, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 453, 488, 497, 695
BstNI	CCWGG	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	459, 692
BstSFI	CTRYAG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	42, 685
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	3 cut(s)	464, 482, 500
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	321, 712
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	453
CfoI	GCGC	2 cut(s)	493, 703
Cfr13I	GGNCC	2 cut(s)	60, 462
Csp6I	GTAC	2 cut(s)	450, 531
CviAII	CATG	4 cut(s)	313, 343, 401, 545
CviQI	GTAC	2 cut(s)	450, 531
DdeI	CTNAG	5 cut(s)	75, 90, 267, 484, 675
DpnI	GATC	2 cut(s)	619, 738
DpnII	GATC	2 cut(s)	617, 736
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	2 cut(s)	482, 500
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	679
Eco88I	CYCGRG	2 cut(s)	290, 334
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	316, 346, 404, 548
FaiI	YATR	7 cut(s)	314, 344, 398, 402, 422, 539, 546
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	312, 342, 400, 544
Fnu4HI	GCNGC	4 cut(s)	56, 578, 609, 699
FokI	GGATG	2 cut(s)	308, 719
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	4 cut(s)	56, 578, 609, 699
GlaI	GCGC	2 cut(s)	492, 702
GluI	GCNGC	4 cut(s)	56, 578, 609, 699
GsuI	CTGGAG	1 cut(s)	761
HaeIII	GGCC	3 cut(s)	464, 482, 500
HapII	CCGG	3 cut(s)	8, 460, 704
HhaI	GCGC	2 cut(s)	493, 703
Hin1II	CATG	4 cut(s)	316, 346, 404, 548
Hin6I	GCGC	2 cut(s)	491, 701
HinP1I	GCGC	2 cut(s)	491, 701
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	6 cut(s)	71, 77, 236, 308, 587, 728
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	3 cut(s)	8, 460, 704
HphI	GGTGA	2 cut(s)	256, 317
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	5 cut(s)	70, 76, 270, 651, 733
Hpy188III	TCNNGA	3 cut(s)	563, 627, 740
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	6 cut(s)	37, 94, 374, 422, 633, 637
HpyCH4III	ACNGT	4 cut(s)	233, 437, 475, 759
HpyCH4V	TGCA	3 cut(s)	346, 447, 550
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 453, 488, 497, 695
HpyF3I	CTNAG	5 cut(s)	75, 90, 267, 484, 675
Hsp92II	CATG	4 cut(s)	316, 346, 404, 548
HspAI	GCGC	2 cut(s)	491, 701
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	617, 736
LmnI	GCTCC	5 cut(s)	10, 124, 321, 366, 398
Lsp1109I	GCAGC	2 cut(s)	42, 685
LweI	GCATC	2 cut(s)	348, 654
MaeIII	GTNAC	3 cut(s)	112, 305, 437
MalI	GATC	2 cut(s)	619, 738
MboI	GATC	2 cut(s)	617, 736
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	2 cut(s)	16, 279
MlyI	GAGTC	3 cut(s)	80, 86, 302
MmeI	TCCRAC	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	3 cut(s)	35, 602, 753
MspA1I	CMGCKG	2 cut(s)	110, 597
MspI	CCGG	3 cut(s)	8, 460, 704
MspR9I	CCNGG	2 cut(s)	461, 694
MvaI	CCWGG	1 cut(s)	694
MwoI	GCNNNNNNNGC	5 cut(s)	116, 453, 488, 497, 695
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	2 cut(s)	617, 736
NlaIII	CATG	4 cut(s)	316, 346, 404, 548
NlaIV	GGNNCC	2 cut(s)	6, 619
NmeAIII	GCCGAG	1 cut(s)	693
NmuCI	GTSAC	2 cut(s)	305, 437
PaeR7I	CTCGAG	2 cut(s)	290, 334
PceI	AGGCCT	2 cut(s)	482, 500
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	236, 587, 728
PkrI	GCNGC	4 cut(s)	57, 579, 610, 700
PleI	GAGTC	3 cut(s)	79, 85, 302
PpsI	GAGTC	3 cut(s)	79, 85, 302
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	692
PspN4I	GGNNCC	2 cut(s)	6, 619
PspPI	GGNCC	2 cut(s)	60, 462
PspXI	VCTCGAGB	2 cut(s)	290, 334
PstI	CTGCAG	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	597
RsaI	GTAC	2 cut(s)	451, 532
RsaNI	GTAC	2 cut(s)	450, 531
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	35, 602, 753
SatI	GCNGC	4 cut(s)	56, 578, 609, 699
Sau3AI	GATC	2 cut(s)	617, 736
Sau96I	GGNCC	2 cut(s)	60, 462
SchI	GAGTC	3 cut(s)	80, 86, 302
ScrFI	CCNGG	2 cut(s)	461, 694
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	348, 654
SfcI	CTRYAG	1 cut(s)	445
Sfr274I	CTCGAG	2 cut(s)	290, 334
SinI	GGWCC	1 cut(s)	60
SlaI	CTCGAG	2 cut(s)	290, 334
SmlI	CTYRAG	2 cut(s)	290, 334
SmoI	CTYRAG	2 cut(s)	290, 334
Sse9I	AATT	2 cut(s)	16, 279
SseBI	AGGCCT	2 cut(s)	482, 500
SsiI	CCGC	5 cut(s)	58, 108, 508, 578, 608
SstI	GAGCTC	1 cut(s)	681
StuI	AGGCCT	2 cut(s)	482, 500
StyD4I	CCNGG	2 cut(s)	459, 692
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	233, 437, 475, 759
TaqI	TCGA	6 cut(s)	141, 173, 255, 291, 335, 415
TasI	AATT	2 cut(s)	16, 279
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	2 cut(s)	580, 611
TfiI	GAWTC	3 cut(s)	236, 587, 728
Tru1I	TTAA	3 cut(s)	35, 602, 753
Tru9I	TTAA	3 cut(s)	35, 602, 753
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	2 cut(s)	305, 437
TseI	GCWGC	2 cut(s)	55, 698
Tsp45I	GTSAC	2 cut(s)	305, 437
TspDTI	ATGAA	4 cut(s)	241, 533, 533, 741
TspGWI	ACGGA	2 cut(s)	580, 630
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	60
XhoI	CTCGAG	2 cut(s)	290, 334
XmnI	GAANNNNTTC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.