Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0018458

Physical Location & Seq

Genomic Coordinates Forward (+)

22793937 .. 22794659

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1139700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTCAATAATTCCAGATCCTCAGCTTACAGCTCTACCATCGCTCCATGTAACTCCATCACCTCATCAGATACCTCAATTCCAATGATGTACTCCACGTCACCAAGCCTTGGTTCGTGTCTCTGTTTGCATGATCGTGGTTCCTTTAAGTACGCATGTAATAGTTGCGACATGGCCTTCCCAACAATTCAGGCTTTGGGAGGCCACCAGAACGCTCACCGCAAAGAGAGAAATGATCTCCGTGCGAAGGGGGTTGCTCGCGCTGCTGAGGAAAACCGCAGGTTCACACCCTACGTGTCCTCACATGACCGCTGGAGATGGGCACCGCCATCTATTAACAACAATTTCATCAACAAAACCAAGACTCGAATGCGTTCATATGACTTCTACCATTTCATGGGAATGGCGGGCGATTGTAATCCGAAATGGGGTGCAGGGTTAGAGTTTGGATCAGGTTCTAAAAGAAGGAAGAGTGGTTATGAAGACAACGACGGTGCCGAGGCGGATCGTGACAAGAAGAAGGGTAAGTATGTTGATGTCGCTGATGATTTGAAAGTGGCTATGTCTAATGTGACGCTGAGCTTGGCAACAGGAAGTGGTGACATGGAGAAGTCCGGTTCTGGTTTAGATTGGGAGGACGGGGAGTACATGTACGTTGTTGGAAGTGACGGTGCAGCAAGTACTTCCAAGATTGAAGAGCTGGACTTAAATCTGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

241

Amino Acids

26.45

Weight (kDa)

7.6

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	51 - 76	1.4e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21782
malus_domestica	MD04G1139700.v1.1 MD12G1054400.v1.1 MD14G1053400.v1.1
prunus_persica	Prupe.7G082300_v2.0.a1
rosa_laevigata	RLG00000023601
rosa_multiflora	Rmu_sc0012914.1_g000004
rosa_roxburghii	Rroxscaffold_6G00402610
rosa_rugosa	Rorug03G0171600
rosa_samantha	Rh3DG247600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	322, 494
AccB7I	CCANNNNNTGG	2 cut(s)	110, 397
AccII	CGCG	1 cut(s)	261
AciI	CCGC	6 cut(s)	220, 277, 310, 326, 407, 503
AclWI	GGATC	3 cut(s)	12, 457, 513
AfaI	GTAC	5 cut(s)	92, 152, 647, 653, 682
AfiI	CCNNNNNNNGG	4 cut(s)	110, 247, 397, 428
AflIII	ACRYGT	2 cut(s)	294, 648
AgsI	TTSAA	3 cut(s)	7, 553, 695
AjiI	CACGTC	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	4 cut(s)	26, 33, 582, 700
AluI	AGCT	4 cut(s)	26, 33, 582, 700
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	12, 457, 513
AoxI	GGCC	2 cut(s)	174, 202
ApeKI	GCWGC	2 cut(s)	263, 674
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	4 cut(s)	52, 93, 209, 611
BaeGI	GKGCMC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	322, 494
BbsI	GAAGAC	1 cut(s)	489
BbvCI	CCTCAGC	2 cut(s)	22, 267
BbvI	GCAGC	2 cut(s)	250, 686
BccI	CCATC	4 cut(s)	47, 65, 312, 337
BcoDI	GTCTC	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	264, 675
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	265, 676
BmcAI	AGTACT	1 cut(s)	682
BmgBI	CACGTC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	142, 324, 496
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	2 cut(s)	22, 267
Bpu1102I	GCTNAGC	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	109, 498
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 635, 665
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 247, 397, 428
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	109, 498
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	4 cut(s)	110, 247, 397, 428
BseMII	CTCAG	3 cut(s)	36, 258, 569
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	250, 686
BsgI	GTGCAG	2 cut(s)	453, 693
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	176, 204
BshNI	GGYRCC	2 cut(s)	322, 494
BsiSI	CCGG	1 cut(s)	615
BslI	CCNNNNNNNGG	4 cut(s)	110, 247, 397, 428
BsmAI	GTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	176, 204
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	17, 133, 235, 449, 505
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	6 cut(s)	220, 277, 310, 326, 407, 503
BspANI	GGCC	2 cut(s)	176, 204
BspCNI	CTCAG	3 cut(s)	35, 259, 570
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	142, 324, 496
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	3 cut(s)	12, 457, 513
BspQI	GCTCTTC	1 cut(s)	690
BspT107I	GGYRCC	2 cut(s)	322, 494
BssECI	CCNNGG	2 cut(s)	109, 498
BssMI	GATC	5 cut(s)	17, 133, 235, 449, 505
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	494, 671
Bst6I	CTCTTC	2 cut(s)	464, 690
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	259, 409
BstDEI	CTNAG	3 cut(s)	22, 267, 578
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	5 cut(s)	20, 136, 238, 452, 508
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	5 cut(s)	17, 133, 235, 449, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	2 cut(s)	159, 652
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	250, 686
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	176, 204
BtgZI	GCGATG	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	259, 409
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	5 cut(s)	91, 151, 646, 652, 681
CviAII	CATG	8 cut(s)	48, 131, 156, 172, 305, 397, 604, 649
CviJI	RGCY	9 cut(s)	26, 33, 108, 176, 194, 204, 560, 582, 700
CviKI_1	RGCY	9 cut(s)	26, 33, 108, 176, 194, 204, 560, 582, 700
CviQI	GTAC	5 cut(s)	91, 151, 646, 652, 681
DdeI	CTNAG	3 cut(s)	22, 267, 578
DpnI	GATC	5 cut(s)	19, 135, 237, 451, 507
DpnII	GATC	5 cut(s)	17, 133, 235, 449, 505
Eam1104I	CTCTTC	2 cut(s)	464, 690
EarI	CTCTTC	2 cut(s)	464, 690
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	8 cut(s)	51, 134, 159, 175, 308, 400, 607, 652
FatI	CATG	8 cut(s)	47, 130, 155, 171, 304, 396, 603, 648
FauI	CCCGC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	264, 675
Fsp4HI	GCNGC	2 cut(s)	264, 675
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	264, 675
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	176, 204
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	8 cut(s)	51, 134, 159, 175, 308, 400, 607, 652
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	4 cut(s)	52, 93, 209, 611
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	70, 423, 714
Hpy188III	TCNNGA	2 cut(s)	15, 509
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	4 cut(s)	187, 241, 459, 514
HpyCH4III	ACNGT	2 cut(s)	494, 671
HpyCH4IV	ACGT	3 cut(s)	98, 294, 654
HpyCH4V	TGCA	3 cut(s)	130, 434, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	22, 267, 578
HpySE526I	ACGT	3 cut(s)	98, 294, 654
Hsp92II	CATG	8 cut(s)	51, 134, 159, 175, 308, 400, 607, 652
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	17, 133, 235, 449, 505
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	2 cut(s)	250, 686
MaeII	ACGT	3 cut(s)	98, 294, 654
MaeIII	GTNAC	6 cut(s)	50, 99, 509, 571, 599, 665
MalI	GATC	5 cut(s)	19, 135, 237, 451, 507
MboI	GATC	5 cut(s)	17, 133, 235, 449, 505
MboII	GAAGA	4 cut(s)	481, 494, 529, 707
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	4 cut(s)	10, 78, 186, 343
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	8 cut(s)	31, 73, 85, 194, 262, 310, 493, 628
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	3 cut(s)	147, 336, 707
MslI	CAYNNNNRTG	2 cut(s)	135, 401
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	375
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	5 cut(s)	17, 133, 235, 449, 505
NlaIII	CATG	8 cut(s)	51, 134, 159, 175, 308, 400, 607, 652
NlaIV	GGNNCC	3 cut(s)	142, 324, 496
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	5 cut(s)	99, 509, 571, 599, 665
NspI	RCATGY	2 cut(s)	159, 652
PciI	ACATGT	1 cut(s)	648
PciSI	GCTCTTC	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	373
PflMI	CCANNNNNTGG	2 cut(s)	110, 397
PkrI	GCNGC	2 cut(s)	265, 676
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	648
PspN4I	GGNNCC	3 cut(s)	142, 324, 496
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	5 cut(s)	92, 152, 647, 653, 682
RsaNI	GTAC	5 cut(s)	91, 151, 646, 652, 681
RseI	CAYNNNNRTG	2 cut(s)	135, 401
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	147, 336, 707
SatI	GCNGC	2 cut(s)	264, 675
Sau3AI	GATC	5 cut(s)	17, 133, 235, 449, 505
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	135, 401
Sse9I	AATT	4 cut(s)	10, 78, 186, 343
SsiI	CCGC	6 cut(s)	220, 277, 310, 326, 407, 503
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	494, 671
TaiI	ACGT	3 cut(s)	101, 297, 657
TaqI	TCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	10, 78, 186, 343
TatI	WGTACW	3 cut(s)	90, 645, 680
Tru1I	TTAA	3 cut(s)	147, 336, 707
Tru9I	TTAA	3 cut(s)	147, 336, 707
TseFI	GTSAC	5 cut(s)	99, 509, 571, 599, 665
TseI	GCWGC	2 cut(s)	263, 674
Tsp45I	GTSAC	5 cut(s)	99, 509, 571, 599, 665
TspDTI	ATGAA	4 cut(s)	337, 366, 385, 495
TspGWI	ACGGA	1 cut(s)	230
Van91I	CCANNNNNTGG	2 cut(s)	110, 397
XceI	RCATGY	2 cut(s)	159, 652
XmnI	GAANNNNTTC	1 cut(s)	373
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.