Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010687

Physical Location & Seq

Genomic Coordinates Reverse (-)

17895377 .. 17899324

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23810.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGATTGCCTGATTCTTCTGGAGGCTTGCTGTCGGAATTGGATGTTGATGCTTTCAGGCGCTTATTTCCTCTTCGGTTTTATGAGAGCCATCTTGTGAAATCCACACGCCCTGATGGGAGGTCACTTGACAAAGCTAGAGAGACTTCCTCGGCCCTTGGGGCTGTTGCCTCTGCGGATGGATCAGCACTTGTGAAGATAGGTTCGACGACAATGTTGGCTGCTATAAAAATGGAAGTCACGACCCCTTCTCAAGAGTTGCCAGATGAGGGACGCATAGCAATTGAATTCCACATGCCTCCAATTTGTTCTCCAATTGTAAGGCCTGGCAGGCCAGCTGAGGCAGCACCCGTTGTGTCAAAGCAACTATCTGACACTATTTCAAGTTCTGGCATGATTAATGTGAAGGAATTATCCTTGATCAGTGGAAAAGCTGCTTGGATGGTCTACCTGGACATATACTGTTTGGACGCTGATGGTGCTCTATTTGATGCTGCTTTGCTGTCAGCAGTCGCTGCCTTTTCTCACTTGCAGATTCCTGTAGTTTCTATGAACAATGAAGGAAAAGTAGTTGTTATGTCTGAGGAAAATGAGGGAGGAAAGGAGCCGGTCAATAAAGAGAAGAGGAAACTCACGTTATGCAGTATTCCATTTTCACTAACATGTATACTTTATAAGAATTTCATCTTGGCTGACCCTACAGCAGAGGAAGAATCGATCATGGAAACACTTGTAACTGTGGTTTTAGATTCATCTGGTCAACTTGTGTCTCTTTACAAGCCAGGTGGACCAGTTCTTGCCTATACATCGGCTATCCAGGATTGTGTTGCACTCACTAGGCAAAGAGTGAGGGAGCTCCAGATGATTTTAGATGAAGCCTCCGCTGGTATGGAGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

301

Amino Acids

32.18

Weight (kDa)

4.83

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	46 - 180	1.6e-25	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	216 - 264	1e-07	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60080
fragaria_vesca	FvH4_6g23810 FvH4_6g23810 FvH4_6g23810 FvH4_6g23810
malus_domestica	MD12G1073800.v1.1
prunus_persica	Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1
pyrus_communis	pycom12g06380
rosa_chinensis	RchiOBHm_Chr3g0482341
rosa_laevigata	RLG00000023357
rosa_roxburghii	Rroxscaffold_6G00399410
rosa_rugosa	Rorug03G0195900
rosa_samantha	Rh3AG247600 Rh3BG282100 Rh3CG279100 Rh3DG274900
rosa_wichuraiana	Rw3G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AccI	GTMKAC	2 cut(s)	447, 667
AciI	CCGC	2 cut(s)	176, 882
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	287, 679
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	2 cut(s)	287, 384
AjnI	CCWGG	4 cut(s)	325, 450, 781, 816
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 671, 703
AluBI	AGCT	4 cut(s)	137, 338, 434, 856
AluI	AGCT	4 cut(s)	137, 338, 434, 856
Alw21I	GWGCWC	2 cut(s)	484, 858
Alw26I	GTCTC	2 cut(s)	137, 774
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	153, 323, 332
ApeKI	GCWGC	5 cut(s)	221, 344, 434, 494, 515
ApoI	RAATTY	2 cut(s)	287, 679
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	154, 788
AvaII	GGWCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	484, 858
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BccI	CCATC	5 cut(s)	99, 110, 173, 436, 470
BciT130I	CCWGG	4 cut(s)	327, 452, 783, 818
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	137, 774
BfaI	CTAG	2 cut(s)	138, 837
BfmI	CTRYAG	2 cut(s)	540, 699
BfoI	RGCGCY	1 cut(s)	64
BglI	GCCNNNNNGGC	2 cut(s)	161, 331
BisI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
BlsI	GCNGC	5 cut(s)	223, 346, 436, 496, 517
Bme1390I	CCNGG	4 cut(s)	327, 452, 783, 818
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	154, 788
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	4 cut(s)	327, 452, 783, 818
BmsI	GCATC	2 cut(s)	40, 481
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	2 cut(s)	42, 842
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	150, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	791
BseBI	CCWGG	4 cut(s)	327, 452, 783, 818
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	150, 157
BseGI	GGATG	3 cut(s)	49, 184, 447
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	330, 573
BseNI	ACTGG	1 cut(s)	791
BseXI	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BshFI	GGCC	3 cut(s)	155, 325, 334
BshVI	ATCGAT	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	484, 858
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	137, 774
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	155, 325, 334
Bsp1286I	GDGCHC	2 cut(s)	484, 858
Bsp143I	GATC	3 cut(s)	182, 420, 717
BspACI	CCGC	2 cut(s)	176, 882
BspANI	GGCC	3 cut(s)	155, 325, 334
BspCNI	CTCAG	2 cut(s)	331, 574
BspDI	ATCGAT	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	791
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	150, 157
BssMI	GATC	3 cut(s)	182, 420, 717
BssNAI	GTATAC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	157
Bst1107I	GTATAC	1 cut(s)	668
Bst2UI	CCWGG	4 cut(s)	327, 452, 783, 818
Bst4CI	ACNGT	2 cut(s)	464, 739
Bst6I	CTCTTC	2 cut(s)	78, 617
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	29, 332, 336
BstDEI	CTNAG	2 cut(s)	339, 582
BstF5I	GGATG	3 cut(s)	49, 184, 447
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	185, 423, 720
BstMAI	GTCTC	2 cut(s)	137, 774
BstMBI	GATC	3 cut(s)	182, 420, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 331, 344, 479, 515
BstNI	CCWGG	4 cut(s)	327, 452, 783, 818
BstNSI	RCATGY	2 cut(s)	298, 666
BstSCI	CCNGG	4 cut(s)	325, 450, 781, 816
BstSFI	CTRYAG	2 cut(s)	540, 699
BstV1I	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BstZ17I	GTATAC	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	155, 325, 334
BsuTUI	ATCGAT	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	49, 184, 447
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	29, 332, 336
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	154, 788
ClaI	ATCGAT	1 cut(s)	716
CseI	GACGC	2 cut(s)	282, 479
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	4 cut(s)	295, 394, 663, 721
DdeI	CTNAG	2 cut(s)	339, 582
DpnI	GATC	3 cut(s)	184, 422, 719
DpnII	GATC	3 cut(s)	182, 420, 717
Eam1104I	CTCTTC	2 cut(s)	78, 617
EarI	CTCTTC	2 cut(s)	78, 617
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	856
EcoICRI	GAGCTC	1 cut(s)	856
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	4 cut(s)	325, 450, 781, 816
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	298, 397, 666, 724
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	4 cut(s)	294, 393, 662, 720
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	2 cut(s)	447, 667
Fnu4HI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
FokI	GGATG	3 cut(s)	56, 191, 454
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
FspBI	CTAG	2 cut(s)	138, 837
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
GsuI	CTGGAG	2 cut(s)	42, 842
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	3 cut(s)	155, 325, 334
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	2 cut(s)	282, 479
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	298, 397, 666, 724
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	761
HindII	GTYRAC	1 cut(s)	761
HinfI	GANTC	4 cut(s)	14, 535, 713, 749
HpaII	CCGG	1 cut(s)	608
Hpy166II	GTNNAC	4 cut(s)	448, 668, 761, 788
Hpy188I	TCNGA	3 cut(s)	37, 373, 583
Hpy188III	TCNNGA	4 cut(s)	21, 241, 254, 859
Hpy8I	GTNNAC	4 cut(s)	448, 668, 761, 788
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	258, 400, 554
HpyCH4III	ACNGT	2 cut(s)	464, 739
HpyCH4IV	ACGT	1 cut(s)	635
HpyCH4V	TGCA	3 cut(s)	532, 642, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 331, 344, 479, 515
HpyF3I	CTNAG	2 cut(s)	339, 582
HpySE526I	ACGT	1 cut(s)	635
Hsp92II	CATG	4 cut(s)	298, 397, 666, 724
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	182, 420, 717
LmnI	GCTCC	3 cut(s)	604, 853, 861
Lsp1109I	GCAGC	5 cut(s)	208, 356, 421, 481, 502
LweI	GCATC	2 cut(s)	40, 481
MaeI	CTAG	2 cut(s)	138, 837
MaeII	ACGT	1 cut(s)	635
MaeIII	GTNAC	3 cut(s)	123, 238, 733
MalI	GATC	3 cut(s)	184, 422, 719
MboI	GATC	3 cut(s)	182, 420, 717
MboII	GAAGA	5 cut(s)	9, 65, 208, 634, 722
MfeI	CAATTG	2 cut(s)	282, 315
MhlI	GDGCHC	2 cut(s)	484, 858
MluCI	AATT	7 cut(s)	38, 282, 287, 303, 315, 410, 679
MmeI	TCCRAC	1 cut(s)	15
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	661
MspA1I	CMGCKG	2 cut(s)	338, 884
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	4 cut(s)	327, 452, 783, 818
MunI	CAATTG	2 cut(s)	282, 315
MvaI	CCWGG	4 cut(s)	327, 452, 783, 818
MwoI	GCNNNNNNNGC	5 cut(s)	161, 331, 344, 479, 515
NdeII	GATC	3 cut(s)	182, 420, 717
NlaIII	CATG	4 cut(s)	298, 397, 666, 724
NlaIV	GGNNCC	1 cut(s)	606
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	123, 238
NspI	RCATGY	2 cut(s)	298, 666
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	14, 535, 713, 749
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	5 cut(s)	223, 346, 436, 496, 517
PscI	ACATGT	1 cut(s)	662
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	4 cut(s)	325, 450, 781, 816
PspGI	CCWGG	4 cut(s)	325, 450, 781, 816
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	2 cut(s)	154, 788
PstNI	CAGNNNCTG	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
Sau3AI	GATC	3 cut(s)	182, 420, 717
Sau96I	GGNCC	2 cut(s)	154, 788
ScrFI	CCNGG	4 cut(s)	327, 452, 783, 818
SduI	GDGCHC	2 cut(s)	484, 858
SfaNI	GCATC	2 cut(s)	40, 481
SfcI	CTRYAG	2 cut(s)	540, 699
SfiI	GGCCNNNNNGGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	7 cut(s)	38, 282, 287, 303, 315, 410, 679
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	176, 882
SspMI	CTAG	2 cut(s)	138, 837
SstI	GAGCTC	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	4 cut(s)	325, 450, 781, 816
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	464, 739
TaiI	ACGT	1 cut(s)	638
TaqI	TCGA	2 cut(s)	206, 716
TasI	AATT	7 cut(s)	38, 282, 287, 303, 315, 410, 679
TfiI	GAWTC	4 cut(s)	14, 535, 713, 749
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	123, 238
TseI	GCWGC	5 cut(s)	221, 344, 434, 494, 515
Tsp45I	GTSAC	2 cut(s)	123, 238
TspDTI	ATGAA	5 cut(s)	566, 573, 673, 741, 888
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	788
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	2 cut(s)	287, 679
XceI	RCATGY	2 cut(s)	298, 666
XmiI	GTMKAC	2 cut(s)	447, 667
XspI	CTAG	2 cut(s)	138, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.