Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010687

Physical Location & Seq

Genomic Coordinates Forward (+)

10022978 .. 10028711

Gene Structure 5734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G061000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGTTGCCAGATGCTTCTGGGGATGTGCTGTCAGAAATGGACGTGGATGCTTTCAGACGCCTGTTTCCTCTTCGTTTTTTTGAGACTCATCTTGTTAAATCTACACGACCTGATGGCAGGTCACTGGCTGAAGCTAGAGAGACTTCTTCAGCCCTTGGGGCTGTTGCATCTGCTGATGGCTCAGCATTAGTAAAGATTGGTTCAACTAGAATGTTGGCTGCTATAAAAATGGAGGTCATGACCCCTTCAAAAGAATCACCGGATGAGGGTTGCATAGCAATTGATTTCCACATGCCTCCAATTTGCTCCCCAACTGTTAGGCCTGGCAGGCCAGCTGAGGCAGCACCTGTGGTGTCGAAGCAGTTATCTGACACTATTTCAAGTTGTGGCATGATTAATTTGAAGGAGTTATCCTTGATCAGCAGAAAGGCTGCTTGGATGGCCTACCTGGACATATATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCTTTGCTGTCAGCAGTTGCTGCCTTTTCTCACTTGCAGATTCCTGTAGTTTCTATGAATGATGATGGGAAAGTAGTGGTTTTGTCTGGAGATCATGGAGGAAAGGAGCCAGTCAATAAAGGGAAGAGGAAACTCACATTAAGCAGTATTCCATTTTCATTAACATGCTTGCTTCATAAGAATTACATCTTGGCTGACCCTACCGCAGAGGAAGAGTCTGTAATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAACTTGTGTCTCTTTACAAGCCAGGTGGACCTGTTCTTGCCTATACATCAGCTATCCAGGATTGTGTTGCACTGACTAGGCAAAGAGCGAGGGAGCTTCAAACGATCTTAGATGAAGTCACCTCCAGTATGGAGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

300

Amino Acids

32.0

Weight (kDa)

5.05

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60080
fragaria_vesca	FvH4_6g23810 FvH4_6g23810 FvH4_6g23810 FvH4_6g23810
malus_domestica	MD12G1073800.v1.1
prunus_persica	Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1
pyrus_communis	pycom12g06380
rosa_chinensis	RchiOBHm_Chr3g0482341
rosa_laevigata	RLG00000023357
rosa_roxburghii	Rroxscaffold_6G00399410
rosa_rugosa	Rorug03G0195900
rosa_samantha	Rh3AG247600 Rh3BG282100 Rh3CG279100 Rh3DG274900
rosa_wichuraiana	Rw3G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AciI	CCGC	1 cut(s)	699
AcuI	CTGAAG	2 cut(s)	135, 153
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	207, 252, 384, 406, 857
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	4 cut(s)	325, 450, 778, 813
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 668, 700
AluBI	AGCT	4 cut(s)	137, 338, 809, 853
AluI	AGCT	4 cut(s)	137, 338, 809, 853
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	3 cut(s)	80, 137, 771
AlwNI	CAGNNNCTG	2 cut(s)	350, 515
AoxI	GGCC	3 cut(s)	323, 332, 444
ApeKI	GCWGC	5 cut(s)	221, 344, 434, 494, 515
AseI	ATTAAT	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	252, 868
AvaII	GGWCC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	484
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BccI	CCATC	5 cut(s)	110, 173, 436, 470, 554
BciT130I	CCWGG	4 cut(s)	327, 452, 780, 815
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	80, 137, 771
BfaI	CTAG	3 cut(s)	138, 210, 834
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	161, 331
BisI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	5 cut(s)	223, 346, 436, 496, 517
Bme1390I	CCNGG	4 cut(s)	327, 452, 780, 815
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	4 cut(s)	327, 452, 780, 815
BmsI	GCATC	5 cut(s)	4, 40, 179, 460, 481
BpmI	CTGGAG	2 cut(s)	603, 865
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	132, 605, 882
BseBI	CCWGG	4 cut(s)	327, 452, 780, 815
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	5 cut(s)	31, 55, 271, 447, 475
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	198, 330
BseNI	ACTGG	3 cut(s)	132, 605, 882
BseXI	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BshFI	GGCC	3 cut(s)	325, 334, 446
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	3 cut(s)	80, 137, 771
BsnI	GGCC	3 cut(s)	325, 334, 446
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	420, 586, 861
Bsp1720I	GCTNAGC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	3 cut(s)	325, 334, 446
BspCNI	CTCAG	2 cut(s)	197, 331
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	132, 605, 882
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	420, 586, 861
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	4 cut(s)	327, 452, 780, 815
Bst4CI	ACNGT	2 cut(s)	319, 736
Bst6I	CTCTTC	3 cut(s)	78, 614, 702
BstACI	GRCGYC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	332, 336, 665
BstDEI	CTNAG	3 cut(s)	184, 339, 865
BstF5I	GGATG	5 cut(s)	31, 55, 271, 447, 475
BstKTI	GATC	3 cut(s)	423, 589, 864
BstMAI	GTCTC	3 cut(s)	80, 137, 771
BstMBI	GATC	3 cut(s)	420, 586, 861
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 331, 344, 443, 479, 515
BstNI	CCWGG	4 cut(s)	327, 452, 780, 815
BstNSI	RCATGY	2 cut(s)	298, 663
BstSCI	CCNGG	4 cut(s)	325, 450, 778, 813
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	5 cut(s)	208, 356, 421, 481, 502
BsuRI	GGCC	3 cut(s)	325, 334, 446
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	5 cut(s)	31, 55, 271, 447, 475
BtsIMutI	CAGTG	2 cut(s)	125, 827
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	332, 336, 665
CaiI	CAGNNNCTG	2 cut(s)	350, 515
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	5 cut(s)	241, 295, 394, 590, 660
DdeI	CTNAG	3 cut(s)	184, 339, 865
DpnI	GATC	3 cut(s)	422, 588, 863
DpnII	GATC	3 cut(s)	420, 586, 861
Eam1104I	CTCTTC	3 cut(s)	78, 614, 702
EarI	CTCTTC	3 cut(s)	78, 614, 702
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	2 cut(s)	135, 153
EcoRII	CCWGG	4 cut(s)	325, 450, 778, 813
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	5 cut(s)	244, 298, 397, 593, 663
FatI	CATG	5 cut(s)	240, 294, 393, 589, 659
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
FokI	GGATG	5 cut(s)	38, 62, 278, 454, 482
Fsp4HI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
FspBI	CTAG	3 cut(s)	138, 210, 834
GluI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
GsuI	CTGGAG	2 cut(s)	603, 865
HaeIII	GGCC	3 cut(s)	325, 334, 446
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	5 cut(s)	244, 298, 397, 593, 663
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HinfI	GANTC	5 cut(s)	88, 257, 535, 710, 746
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	252, 868
Hpy166II	GTNNAC	2 cut(s)	758, 785
Hpy188I	TCNGA	3 cut(s)	37, 59, 373
Hpy188III	TCNNGA	2 cut(s)	241, 582
Hpy8I	GTNNAC	2 cut(s)	758, 785
HpyAV	CCTTC	2 cut(s)	258, 400
HpyCH4III	ACNGT	2 cut(s)	319, 736
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	170, 276, 532, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 331, 344, 443, 479, 515
HpyF3I	CTNAG	3 cut(s)	184, 339, 865
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	244, 298, 397, 593, 663
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	420, 586, 861
LmnI	GCTCC	3 cut(s)	314, 601, 850
Lsp1109I	GCAGC	5 cut(s)	208, 356, 421, 481, 502
LweI	GCATC	5 cut(s)	4, 40, 179, 460, 481
MaeI	CTAG	3 cut(s)	138, 210, 834
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	123, 730, 874
MalI	GATC	3 cut(s)	422, 588, 863
MboI	GATC	3 cut(s)	420, 586, 861
MboII	GAAGA	4 cut(s)	65, 141, 631, 719
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	282, 303, 400, 676
MlyI	GAGTC	2 cut(s)	82, 719
MseI	TTAA	4 cut(s)	99, 399, 635, 656
MslI	CAYNNNNRTG	1 cut(s)	658
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	4 cut(s)	327, 452, 780, 815
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	4 cut(s)	327, 452, 780, 815
MwoI	GCNNNNNNNGC	6 cut(s)	161, 331, 344, 443, 479, 515
NdeII	GATC	3 cut(s)	420, 586, 861
NlaIII	CATG	5 cut(s)	244, 298, 397, 593, 663
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	123, 874
NspI	RCATGY	2 cut(s)	298, 663
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	257, 535, 746
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	5 cut(s)	223, 346, 436, 496, 517
PleI	GAGTC	2 cut(s)	82, 718
PpsI	GAGTC	2 cut(s)	82, 718
PshBI	ATTAAT	1 cut(s)	399
Psp6I	CCWGG	4 cut(s)	325, 450, 778, 813
PspGI	CCWGG	4 cut(s)	325, 450, 778, 813
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	785
PstNI	CAGNNNCTG	2 cut(s)	350, 515
PvuII	CAGCTG	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	99, 399, 635, 656
SatI	GCNGC	5 cut(s)	222, 345, 435, 495, 516
Sau3AI	GATC	3 cut(s)	420, 586, 861
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	2 cut(s)	82, 719
ScrFI	CCNGG	4 cut(s)	327, 452, 780, 815
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	5 cut(s)	4, 40, 179, 460, 481
SfcI	CTRYAG	1 cut(s)	540
SfiI	GGCCNNNNNGGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	658
Sse9I	AATT	4 cut(s)	282, 303, 400, 676
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	699
SspMI	CTAG	3 cut(s)	138, 210, 834
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	4 cut(s)	325, 450, 778, 813
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	319, 736
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	282, 303, 400, 676
TfiI	GAWTC	3 cut(s)	257, 535, 746
Tru1I	TTAA	4 cut(s)	99, 399, 635, 656
Tru9I	TTAA	4 cut(s)	99, 399, 635, 656
TscAI	CASTG	2 cut(s)	132, 834
TseFI	GTSAC	2 cut(s)	123, 874
TseI	GCWGC	5 cut(s)	221, 344, 434, 494, 515
Tsp45I	GTSAC	2 cut(s)	123, 874
TspDTI	ATGAA	5 cut(s)	566, 642, 659, 738, 885
TspRI	CASTG	2 cut(s)	132, 834
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	399
XceI	RCATGY	2 cut(s)	298, 663
XspI	CTAG	3 cut(s)	138, 210, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.