Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010687

Physical Location & Seq

Genomic Coordinates Reverse (-)

8829753 .. 8833907

Gene Structure 4155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1073800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGGCTTCCTGATGGTTCTGGGGATTTGCTGTCCGAAATGGACGGGGATGCTTTCAGACGTCTATTTCCTCTTCAGTTTTATGAGAGCCATTTTGTTAAATCTACACGCCCTGATGGCAGGTCACTAACCGAAGCTAGAGAGACTTCTTCAGCCCTTGGTGCAGTTGCATCCGCTGATGGGTCAGCATTAGTAAAGATTGGTTCAACTACAATGCTCGCTGCAATAAAAATGGAAGTCATGACCCCTCCAACAGAGTCACCAGATGAAGGCTGCATAGCAATTGATTTCCACATGCCTCCAATTTGTTCTCCAACTGTTAGGCCTGGCAGGCCCGCTGATGCAGCACCGGTTGTGTCAAAGCAGCTATCTGACACTATTTTAAGTTCTGGCATGGTTAATTTGAAGGAGCTATCCTTAATCAGTGGAAAAGCTGCTTGGATGGCCTACTTGGACATATATTGTTTGGATGCTGATGGTGCTCTTTTCGATGCAGCTTTGCTGTCAGCAGTTGCTGCCTTTTCTCACTTGCAGATTCCGGTAGTTTCGATGAATGATGAAGGAAAAGTAGTAGTTATGTTTGAGGAACAAGGTGGGAAGGAGGCAGTCAATAACGGGAAGAGGAAACTCACACTAAGCAGTATTCCATTTTCATTGACGTGCATACTTCATAAGAAATACATCTTGGCTGACCCTACAGCAGAGGAAGAGTCCATCATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCCGGTCAACTTGTGTCTCTTTACAAGCCCGGTGGACCAGTTCTTGCCTATACCTCAGTTATCCAGGACTGTGTTGCGCTGACTAGACAAAGAGCGAGGGAGCTTCAGGCGATTTTAGATGAAGCCATCTCTGGTATGGAGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

300

Amino Acids

31.87

Weight (kDa)

4.68

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	45 - 180	1.2e-24	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	215 - 264	1.8e-09	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60080
fragaria_vesca	FvH4_6g23810 FvH4_6g23810 FvH4_6g23810 FvH4_6g23810
malus_domestica	MD12G1073800.v1.1
prunus_persica	Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1
pyrus_communis	pycom12g06380
rosa_chinensis	RchiOBHm_Chr3g0482341
rosa_laevigata	RLG00000023357
rosa_roxburghii	Rroxscaffold_6G00399410
rosa_rugosa	Rorug03G0195900
rosa_samantha	Rh3AG247600 Rh3BG282100 Rh3CG279100 Rh3DG274900
rosa_wichuraiana	Rw3G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	111
AciI	CCGC	2 cut(s)	174, 336
AcuI	CTGAAG	3 cut(s)	59, 135, 839
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	180, 269
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	207, 406
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	2 cut(s)	325, 813
AjuI	GAANNNNNNNTTGG	4 cut(s)	421, 453, 668, 700
AluBI	AGCT	6 cut(s)	137, 367, 412, 434, 497, 853
AluI	AGCT	6 cut(s)	137, 367, 412, 434, 497, 853
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	2 cut(s)	137, 771
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	323, 332, 444
ApeKI	GCWGC	7 cut(s)	221, 273, 344, 364, 434, 494, 515
AsiGI	ACCGGT	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	333, 785
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	7 cut(s)	208, 260, 356, 376, 421, 502, 506
BccI	CCATC	7 cut(s)	8, 110, 173, 436, 470, 722, 884
BciT130I	CCWGG	2 cut(s)	327, 815
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	2 cut(s)	137, 771
BfaI	CTAG	2 cut(s)	138, 834
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	117, 331
BisI	GCNGC	7 cut(s)	222, 274, 345, 365, 435, 495, 516
BlsI	GCNGC	7 cut(s)	223, 275, 346, 366, 436, 496, 517
Bme1390I	CCNGG	3 cut(s)	327, 780, 815
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	333, 785
BmrFI	CCNGG	3 cut(s)	327, 780, 815
BmsI	GCATC	5 cut(s)	40, 179, 331, 460, 481
BpuMI	CCSGG	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	3 cut(s)	349, 538, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 269
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	327, 815
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	5 cut(s)	55, 170, 447, 475, 749
BseLI	CCNNNNNNNGG	2 cut(s)	180, 269
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	1 cut(s)	788
BseXI	GCAGC	7 cut(s)	208, 260, 356, 376, 421, 502, 506
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	325, 334, 446
BshTI	ACCGGT	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	4 cut(s)	350, 539, 753, 780
BslI	CCNNNNNNNGG	2 cut(s)	180, 269
BsmAI	GTCTC	2 cut(s)	137, 771
BsnI	GGCC	3 cut(s)	325, 334, 446
Bsp1286I	GDGCHC	1 cut(s)	484
BspACI	CCGC	2 cut(s)	174, 336
BspANI	GGCC	3 cut(s)	325, 334, 446
BspCNI	CTCAG	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	327, 815
Bst4CI	ACNGT	3 cut(s)	319, 736, 821
Bst6I	CTCTTC	3 cut(s)	78, 614, 702
BstACI	GRCGYC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	219, 332, 336
BstDEI	CTNAG	2 cut(s)	635, 805
BstF5I	GGATG	5 cut(s)	55, 170, 447, 475, 749
BstHHI	GCGC	1 cut(s)	829
BstMAI	GTCTC	2 cut(s)	137, 771
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 161, 331, 344, 443, 479, 515
BstNI	CCWGG	2 cut(s)	327, 815
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	325, 778, 813
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	7 cut(s)	208, 260, 356, 376, 421, 502, 506
BsuRI	GGCC	3 cut(s)	325, 334, 446
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	5 cut(s)	55, 170, 447, 475, 749
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	219, 332, 336
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	333, 785
CspAI	ACCGGT	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	4 cut(s)	241, 295, 394, 718
DdeI	CTNAG	2 cut(s)	635, 805
Eam1104I	CTCTTC	3 cut(s)	78, 614, 702
EarI	CTCTTC	3 cut(s)	78, 614, 702
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	59, 135, 839
EcoRII	CCWGG	2 cut(s)	325, 813
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	244, 298, 397, 721
FatI	CATG	4 cut(s)	240, 294, 393, 717
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	7 cut(s)	222, 274, 345, 365, 435, 495, 516
FokI	GGATG	5 cut(s)	62, 157, 454, 482, 736
Fsp4HI	GCNGC	7 cut(s)	222, 274, 345, 365, 435, 495, 516
FspBI	CTAG	2 cut(s)	138, 834
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	7 cut(s)	222, 274, 345, 365, 435, 495, 516
HaeIII	GGCC	3 cut(s)	325, 334, 446
HapII	CCGG	4 cut(s)	350, 539, 753, 780
HhaI	GCGC	1 cut(s)	829
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	244, 298, 397, 721
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HinfI	GANTC	4 cut(s)	257, 535, 710, 746
HpaII	CCGG	4 cut(s)	350, 539, 753, 780
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	2 cut(s)	758, 785
Hpy188I	TCNGA	3 cut(s)	37, 59, 373
Hpy188III	TCNNGA	2 cut(s)	11, 241
Hpy8I	GTNNAC	2 cut(s)	758, 785
HpyAV	CCTTC	4 cut(s)	263, 400, 554, 592
HpyCH4III	ACNGT	3 cut(s)	319, 736, 821
HpyCH4IV	ACGT	2 cut(s)	61, 659
HpyCH4V	TGCA	8 cut(s)	164, 170, 224, 276, 344, 494, 532, 663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 161, 331, 344, 443, 479, 515
HpyF3I	CTNAG	2 cut(s)	635, 805
HpySE526I	ACGT	2 cut(s)	61, 659
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	244, 298, 397, 721
HspAI	GCGC	1 cut(s)	827
LmnI	GCTCC	2 cut(s)	409, 850
Lsp1109I	GCAGC	7 cut(s)	208, 260, 356, 376, 421, 502, 506
LweI	GCATC	5 cut(s)	40, 179, 331, 460, 481
MaeI	CTAG	2 cut(s)	138, 834
MaeII	ACGT	2 cut(s)	61, 659
MaeIII	GTNAC	3 cut(s)	123, 258, 730
MboII	GAAGA	4 cut(s)	65, 141, 631, 719
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	3 cut(s)	282, 303, 400
MlyI	GAGTC	2 cut(s)	266, 719
MmeI	TCCRAC	2 cut(s)	275, 338
MseI	TTAA	4 cut(s)	99, 383, 399, 419
MslI	CAYNNNNRTG	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	176, 338
MspI	CCGG	4 cut(s)	350, 539, 753, 780
MspR9I	CCNGG	3 cut(s)	327, 780, 815
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	327, 815
MwoI	GCNNNNNNNGC	7 cut(s)	117, 161, 331, 344, 443, 479, 515
NciI	CCSGG	1 cut(s)	780
NlaIII	CATG	4 cut(s)	244, 298, 397, 721
NmuCI	GTSAC	2 cut(s)	123, 258
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	535, 746
PfoI	TCCNGGA	1 cut(s)	813
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	7 cut(s)	223, 275, 346, 366, 436, 496, 517
PleI	GAGTC	2 cut(s)	265, 718
PpsI	GAGTC	2 cut(s)	265, 718
Psp6I	CCWGG	2 cut(s)	325, 813
PspGI	CCWGG	2 cut(s)	325, 813
PspPI	GGNCC	2 cut(s)	333, 785
PstNI	CAGNNNCTG	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	99, 383, 399, 419
SatI	GCNGC	7 cut(s)	222, 274, 345, 365, 435, 495, 516
Sau96I	GGNCC	2 cut(s)	333, 785
SchI	GAGTC	2 cut(s)	266, 719
ScrFI	CCNGG	3 cut(s)	327, 780, 815
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	5 cut(s)	40, 179, 331, 460, 481
SfcI	CTRYAG	1 cut(s)	696
SfiI	GGCCNNNNNGGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	658
Sse9I	AATT	3 cut(s)	282, 303, 400
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	174, 336
SspMI	CTAG	2 cut(s)	138, 834
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	3 cut(s)	325, 778, 813
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	319, 736, 821
TaiI	ACGT	2 cut(s)	64, 662
TaqI	TCGA	2 cut(s)	489, 548
TasI	AATT	3 cut(s)	282, 303, 400
TfiI	GAWTC	2 cut(s)	535, 746
Tru1I	TTAA	4 cut(s)	99, 383, 399, 419
Tru9I	TTAA	4 cut(s)	99, 383, 399, 419
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	123, 258
TseI	GCWGC	7 cut(s)	221, 273, 344, 364, 434, 494, 515
Tsp45I	GTSAC	2 cut(s)	123, 258
TspDTI	ATGAA	7 cut(s)	282, 566, 573, 642, 659, 738, 885
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	785
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XspI	CTAG	2 cut(s)	138, 834
ZraI	GACGTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.