Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010687

Physical Location & Seq

Genomic Coordinates Reverse (-)

6509999 .. 6513128

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGCTTCCAGATGGTTCTGGGGATTTGCTGTCCGAAATGGACGGGGATGCTTTCAGACGTCTATTTCCTCTTCAGTTTTATGAGAGCCATTTTGTTAAATCTACACGCCCTGATGGCAGGTCACTAACCGAAGCTAGAGAGACTTCTTCAGCCCTTGTTGCATCCGCTGATGGGTCAGCATTAGTAAAGATTGGTTCAACTACAATGCTGGCTGCAATAAAAATGGAAGTCATGACCCCTCCAACAGAGTCACCAGATGAAGGCTGCATAGCAATTGATTTCCACATGCCTCCAATTTGTTCTCCAACTGTTAGGCCTGGCAGGCCTGCTGATGCAGCACCGGTTGTGTCGAAGCAGCTATCTGACACTATTTTAAGTTCTGGCTTGATTAATTTGAAGGAGCTATCCTTAATCAGTGGAAAAGCTGCTTGGATGGCCTACTTGGACATATATTGTTTGGATGCTGATGGTGCTCTTTTCGATGCAGCTTTGCTGTCAGCAGTTGCTGCCTTTTCTCACTTGCAGATTCCGGTAGTTTCGATGAATGATGAAGGAAAAGTAGTAGTTATGTCTGAGGAGCAAGGTGGGAAGGAGGCAGTCAATAACGGGAAGAGGAAACTCACACTAAGCAGTATTCCATTTTCATTGACGTGCATACTTCATAAGAAATACATCTTGGTTGACCCTACAGCAGAGGAAGAGTCCATCATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCCGGTCAACTTGTGTCTCTTTACAAGCCCGGTGGACCAGTTCTTGCCTATACCTCAGCTATCCAGGACTGTGTTGCACTGACTAGACAAAGAGCGAGGGAGCTTCAGGCGATTTTAGATGAAGCAATCTCTGGTATGGAGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

298

Amino Acids

31.68

Weight (kDa)

4.68

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60080
fragaria_vesca	FvH4_6g23810 FvH4_6g23810 FvH4_6g23810 FvH4_6g23810
malus_domestica	MD12G1073800.v1.1
prunus_persica	Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1 Prupe.7G061000_v2.0.a1
pyrus_communis	pycom12g06380
rosa_chinensis	RchiOBHm_Chr3g0482341
rosa_laevigata	RLG00000023357
rosa_roxburghii	Rroxscaffold_6G00399410
rosa_rugosa	Rorug03G0195900
rosa_samantha	Rh3AG247600 Rh3BG282100 Rh3CG279100 Rh3DG274900
rosa_wichuraiana	Rw3G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	111
AciI	CCGC	1 cut(s)	168
AcuI	CTGAAG	3 cut(s)	59, 135, 833
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	174, 263
AgeI	ACCGGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	201, 400
AjiI	CACGTC	1 cut(s)	654
AjnI	CCWGG	2 cut(s)	319, 807
AjuI	GAANNNNNNNTTGG	4 cut(s)	415, 447, 662, 694
AluBI	AGCT	7 cut(s)	137, 361, 406, 428, 491, 803, 847
AluI	AGCT	7 cut(s)	137, 361, 406, 428, 491, 803, 847
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	137, 765
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	317, 326, 438
ApeKI	GCWGC	7 cut(s)	215, 267, 338, 358, 428, 488, 509
AseI	ATTAAT	1 cut(s)	393
AsiGI	ACCGGT	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	774
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	478
BbvCI	CCTCAGC	1 cut(s)	799
BbvI	GCAGC	7 cut(s)	202, 254, 350, 370, 415, 496, 500
BccI	CCATC	6 cut(s)	8, 110, 167, 430, 464, 716
BciT130I	CCWGG	2 cut(s)	321, 809
BcnI	CCSGG	1 cut(s)	774
BcoDI	GTCTC	2 cut(s)	137, 765
BfaI	CTAG	2 cut(s)	138, 828
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	117, 325
BisI	GCNGC	7 cut(s)	216, 268, 339, 359, 429, 489, 510
BlsI	GCNGC	7 cut(s)	217, 269, 340, 360, 430, 490, 511
Bme1390I	CCNGG	3 cut(s)	321, 774, 809
Bme18I	GGWCC	1 cut(s)	779
BmgBI	CACGTC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	779
BmrFI	CCNGG	3 cut(s)	321, 774, 809
BmsI	GCATC	5 cut(s)	40, 173, 325, 454, 475
Bpu10I	CCTNAGC	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	61
BsaWI	WCCGGW	3 cut(s)	343, 532, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 263
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	782
BseBI	CCWGG	2 cut(s)	321, 809
BseGI	GGATG	5 cut(s)	55, 164, 441, 469, 743
BseLI	CCNNNNNNNGG	2 cut(s)	174, 263
BseMII	CTCAG	2 cut(s)	567, 813
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	7 cut(s)	202, 254, 350, 370, 415, 496, 500
BshFI	GGCC	3 cut(s)	319, 328, 440
BshTI	ACCGGT	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	4 cut(s)	344, 533, 747, 774
BslI	CCNNNNNNNGG	2 cut(s)	174, 263
BsmAI	GTCTC	2 cut(s)	137, 765
BsnI	GGCC	3 cut(s)	319, 328, 440
Bsp1286I	GDGCHC	1 cut(s)	478
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	3 cut(s)	319, 328, 440
BspCNI	CTCAG	2 cut(s)	568, 812
BspHI	TCATGA	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	321, 809
Bst4CI	ACNGT	3 cut(s)	313, 730, 815
Bst6I	CTCTTC	3 cut(s)	78, 608, 696
BstACI	GRCGYC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	213, 326, 330
BstDEI	CTNAG	3 cut(s)	576, 629, 799
BstF5I	GGATG	5 cut(s)	55, 164, 441, 469, 743
BstMAI	GTCTC	2 cut(s)	137, 765
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 161, 325, 338, 437, 473, 509
BstNI	CCWGG	2 cut(s)	321, 809
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	319, 772, 807
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	7 cut(s)	202, 254, 350, 370, 415, 496, 500
BsuRI	GGCC	3 cut(s)	319, 328, 440
BtrI	CACGTC	1 cut(s)	654
BtsCI	GGATG	5 cut(s)	55, 164, 441, 469, 743
BtsIMutI	CAGTG	2 cut(s)	424, 821
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	213, 326, 330
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	779
CspAI	ACCGGT	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviAII	CATG	3 cut(s)	235, 289, 712
DdeI	CTNAG	3 cut(s)	576, 629, 799
Eam1104I	CTCTTC	3 cut(s)	78, 608, 696
EarI	CTCTTC	3 cut(s)	78, 608, 696
Eco147I	AGGCCT	2 cut(s)	319, 328
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	59, 135, 833
EcoRII	CCWGG	2 cut(s)	319, 807
FaeI	CATG	3 cut(s)	238, 292, 715
FatI	CATG	3 cut(s)	234, 288, 711
Fnu4HI	GCNGC	7 cut(s)	216, 268, 339, 359, 429, 489, 510
FokI	GGATG	5 cut(s)	62, 151, 448, 476, 730
Fsp4HI	GCNGC	7 cut(s)	216, 268, 339, 359, 429, 489, 510
FspBI	CTAG	2 cut(s)	138, 828
GluI	GCNGC	7 cut(s)	216, 268, 339, 359, 429, 489, 510
HaeIII	GGCC	3 cut(s)	319, 328, 440
HapII	CCGG	4 cut(s)	344, 533, 747, 774
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	238, 292, 715
HincII	GTYRAC	2 cut(s)	685, 752
HindII	GTYRAC	2 cut(s)	685, 752
HinfI	GANTC	4 cut(s)	251, 529, 704, 740
HpaII	CCGG	4 cut(s)	344, 533, 747, 774
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	3 cut(s)	685, 752, 779
Hpy188I	TCNGA	4 cut(s)	37, 59, 367, 577
Hpy188III	TCNNGA	2 cut(s)	11, 235
Hpy8I	GTNNAC	3 cut(s)	685, 752, 779
HpyAV	CCTTC	4 cut(s)	257, 394, 548, 586
HpyCH4III	ACNGT	3 cut(s)	313, 730, 815
HpyCH4IV	ACGT	2 cut(s)	61, 653
HpyCH4V	TGCA	8 cut(s)	164, 218, 270, 338, 488, 526, 657, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 161, 325, 338, 437, 473, 509
HpyF3I	CTNAG	3 cut(s)	576, 629, 799
HpySE526I	ACGT	2 cut(s)	61, 653
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	238, 292, 715
LmnI	GCTCC	3 cut(s)	403, 580, 844
Lsp1109I	GCAGC	7 cut(s)	202, 254, 350, 370, 415, 496, 500
LweI	GCATC	5 cut(s)	40, 173, 325, 454, 475
MaeI	CTAG	2 cut(s)	138, 828
MaeII	ACGT	2 cut(s)	61, 653
MaeIII	GTNAC	3 cut(s)	123, 252, 724
MboII	GAAGA	4 cut(s)	65, 141, 625, 713
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	3 cut(s)	276, 297, 394
MlyI	GAGTC	2 cut(s)	260, 713
MmeI	TCCRAC	2 cut(s)	269, 332
MseI	TTAA	4 cut(s)	99, 377, 393, 413
MslI	CAYNNNNRTG	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	4 cut(s)	344, 533, 747, 774
MspR9I	CCNGG	3 cut(s)	321, 774, 809
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	321, 809
MwoI	GCNNNNNNNGC	7 cut(s)	117, 161, 325, 338, 437, 473, 509
NciI	CCSGG	1 cut(s)	774
NlaIII	CATG	3 cut(s)	238, 292, 715
NmuCI	GTSAC	2 cut(s)	123, 252
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	2 cut(s)	319, 328
PfeI	GAWTC	2 cut(s)	529, 740
PfoI	TCCNGGA	1 cut(s)	807
PinAI	ACCGGT	1 cut(s)	343
PkrI	GCNGC	7 cut(s)	217, 269, 340, 360, 430, 490, 511
PleI	GAGTC	2 cut(s)	259, 712
PpsI	GAGTC	2 cut(s)	259, 712
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	319, 807
PspGI	CCWGG	2 cut(s)	319, 807
PspPI	GGNCC	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	652
SaqAI	TTAA	4 cut(s)	99, 377, 393, 413
SatI	GCNGC	7 cut(s)	216, 268, 339, 359, 429, 489, 510
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	2 cut(s)	260, 713
ScrFI	CCNGG	3 cut(s)	321, 774, 809
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	5 cut(s)	40, 173, 325, 454, 475
SfcI	CTRYAG	1 cut(s)	690
SfiI	GGCCNNNNNGGCC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	652
Sse9I	AATT	3 cut(s)	276, 297, 394
SseBI	AGGCCT	2 cut(s)	319, 328
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	138, 828
StuI	AGGCCT	2 cut(s)	319, 328
StyD4I	CCNGG	3 cut(s)	319, 772, 807
TaaI	ACNGT	3 cut(s)	313, 730, 815
TaiI	ACGT	2 cut(s)	64, 656
TaqI	TCGA	3 cut(s)	353, 483, 542
TasI	AATT	3 cut(s)	276, 297, 394
TfiI	GAWTC	2 cut(s)	529, 740
Tru1I	TTAA	4 cut(s)	99, 377, 393, 413
Tru9I	TTAA	4 cut(s)	99, 377, 393, 413
TscAI	CASTG	2 cut(s)	424, 828
TseFI	GTSAC	2 cut(s)	123, 252
TseI	GCWGC	7 cut(s)	215, 267, 338, 358, 428, 488, 509
Tsp45I	GTSAC	2 cut(s)	123, 252
TspDTI	ATGAA	7 cut(s)	276, 560, 567, 636, 653, 732, 879
TspRI	CASTG	2 cut(s)	424, 828
VpaK11BI	GGWCC	1 cut(s)	779
VspI	ATTAAT	1 cut(s)	393
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	2 cut(s)	138, 828
ZraI	GACGTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.