FvH4_6g24270

Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18284600 .. 18291871
7272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24270.t3

Sequence Viewer

Length: 1584 bp
ATGGCTGCTGGTGTCAAGATAGGAGCCACCGGCGTCGGAGCCTTTCCGGCTCACCGAGCCACCACCATGTCCGCCGCTCTCCCCCTCCCTCACTCTCTCTTCTTCCTCCGCACTCTCCCCTCACGCCCACGCGCCCTCCGCCTCCACTCCTCCCCCTCCTCTCGCTCTCACTCTCACTCTCACTCTCGCTCTCACCCCCTCCGCGCTTGCTCCGATGAATCTCCTCCACCTGCTTCAGGGCGAGAGGTGGAGAATGTGGTGATTATAGGTTCAGGTCCGGCGGGATTCACGGCGGCAATCTACGCGGCAAGGGCGAATCTGAAGCCGCTGGTGTTTGAGGGCTACCAGTATGGTCCCGGTGGGCAGCTCATGACTACTACGGAGGTTGAGAATTTTCCGGGGTTCCCTGAGGGAATTACTGGTCCGGATTTAATGGACAAAATGCGGCGGCAGGCCGAGCGGTGGGGAGCTGAGTTGTATCAGGAAGATGTTGAGTCTATTGATGTTACTACTAGGCCCTTTACTGTGATGAGCAGTGACCGTAAGGTTAAGTGCAACAGTCTAATTTTTGCCACAGGGGCTACTGCAAGACGTCTCAGGATACCCCGTGAAGATGAATTTTGGAGTAGGGGGATTAGTGCTTGTGCAATATGTGATGGAGCATCGCCACTGTTTAAAGGGCAAGTGCTTGCCGTGGTAGGAGGGGGTGATACAGCCACAGAGGAAGCTTTGTACCTTACTAAATATGCTCGACATGTTCACTTGCTTGTCCGTAGAGATCAACTGAGGGCTTCCAGAGCCATGCAAGATAGAGTGTTCAACAACCAAAATATCACCGTGCATTTCAACACAGAGACTGTGGACATTGTTAGCAATACAAAGGGCCAGATGTCTGGAGTATTAATTCGGAACCTTGACACTAAGGAGGAATCTGTGATTGAAGCAAAGGGGTTATTTTATGGTATAGGCCACTCACCAAATAGCCAGTTGTTGGAAGGTCAGGTTGAGCTTGACAGTTCTGGCTATGTCGTAGTAGAGGAGGGAACTGCAAAGACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTACAGGACCATGAATGGAGGCAAGCTGTAACTGCTGCAGGTTCTGGATGCATTGCTGCATTATCAGTCGAGAGATATCTTGTGGGCAAAAATCTCATTATTGAGTTTCACCAGCCCCAAACTGAAGAGGCTAAGAAGGAACTCACAGACAGGGATGTGCAGGAACATTTTGACATTACAATTACAAAGCATAAGGGCCAGTATGCACTGCGAAAATTGTACCATGAAAGTCCAAGGCTTATATGTGTGCTATATACAGCACCAACATGTGGTCCGTGCAGAACTTTGAAACCAATTCTTAGTAAGGTGATAGATGAATTCGACAGGAATGTACATTTCGTTGAAATTGATATCGAGGAAGATCAAGAAATAGCTGAGGCTGCAGGAATCATGGGTACACCATGTGTTCAGTTTTTCAAAAACAAGGAGATGATCAGGACTGTATCGGGCGTCAAGATGAAGAGTGAGTATAGAGATTTCATTGAAGCAAATAAATGA

Protein Analysis

528

Amino Acids

58.04

Weight (kDa)

6.4

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 85 - 378 2.2e-51 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 160 - 361 1.1e-16 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 230 - 303 1.2e-14 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013489)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
AatII GACGTC 1 cut(s) 595
Acc36I ACCTGC 2 cut(s) 238, 1115
AccB7I CCANNNNNTGG 2 cut(s) 991, 1355
AccBSI CCGCTC 2 cut(s) 77, 460
AccII CGCG 3 cut(s) 132, 204, 305
AccIII TCCGGA 1 cut(s) 424
AcsI RAATTY 3 cut(s) 391, 617, 1403
AcuI CTGAAG 4 cut(s) 219, 341, 1041, 1230
AcyI GRCGYC 3 cut(s) 33, 592, 1536
AdeI CACNNNGTG 1 cut(s) 1490
AfaI GTAC 5 cut(s) 734, 1089, 1307, 1419, 1483
AfiI CCNNNNNNNGG 4 cut(s) 236, 462, 991, 1355
AflIII ACRYGT 2 cut(s) 754, 1352
AgsI TTSAA 8 cut(s) 820, 847, 941, 1064, 1375, 1430, 1504, 1571
AluBI AGCT 6 cut(s) 367, 470, 728, 1009, 1112, 1460
AluI AGCT 6 cut(s) 367, 470, 728, 1009, 1112, 1460
Alw26I GTCTC 2 cut(s) 599, 848
AlwNI CAGNNNCTG 2 cut(s) 857, 1130
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 5 cut(s) 453, 515, 883, 967, 1282
ApeKI GCWGC 6 cut(s) 5, 364, 1076, 1121, 1142, 1466
ApoI RAATTY 3 cut(s) 391, 617, 1403
AseI ATTAAT 1 cut(s) 902
AspLEI GCGC 2 cut(s) 134, 206
AspS9I GGNCC 8 cut(s) 275, 353, 422, 516, 883, 1093, 1282, 1358
AsuC2I CCSGG 2 cut(s) 357, 399
AsuHPI GGTGA 8 cut(s) 44, 185, 271, 719, 826, 966, 1187, 1405
AvaII GGWCC 5 cut(s) 275, 353, 422, 1093, 1358
AxyI CCTNAGG 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 1461
BbvI GCAGC 5 cut(s) 376, 1063, 1108, 1129, 1453
BccI CCATC 1 cut(s) 650
BceAI ACGGC 2 cut(s) 306, 677
BciVI GTATCC 1 cut(s) 594
BclI TGATCA 1 cut(s) 1518
BcnI CCSGG 2 cut(s) 357, 399
BcoDI GTCTC 2 cut(s) 599, 848
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 2 cut(s) 1122, 1467
BfuAI ACCTGC 2 cut(s) 238, 1115
BfuI GTATCC 1 cut(s) 594
BglI GCCNNNNNGGC 2 cut(s) 47, 578
Bme1390I CCNGG 2 cut(s) 357, 399
Bme18I GGWCC 5 cut(s) 275, 353, 422, 1093, 1358
BmgT120I GGNCC 8 cut(s) 275, 353, 422, 516, 883, 1093, 1282, 1358
BmiI GGNNCC 5 cut(s) 25, 40, 355, 404, 911
BmrFI CCNGG 2 cut(s) 357, 399
BmsI GCATC 2 cut(s) 671, 1124
BpmI CTGGAG 2 cut(s) 915, 1101
Bpu10I CCTNAGC 1 cut(s) 1461
BpuMI CCSGG 2 cut(s) 357, 399
BsaHI GRCGYC 3 cut(s) 33, 592, 1536
BsaJI CCNNGG 3 cut(s) 398, 693, 1319
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 462, 991, 1355
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 4 cut(s) 346, 424, 985, 1285
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 1137
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 398, 693, 1319
BseGI GGATG 2 cut(s) 1139, 1246
BseLI CCNNNNNNNGG 4 cut(s) 236, 462, 991, 1355
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 5 cut(s) 399, 462, 610, 776, 1452
BseNI ACTGG 4 cut(s) 346, 424, 985, 1285
BseRI GAGGAG 4 cut(s) 139, 148, 213, 1052
BseXI GCAGC 5 cut(s) 376, 1063, 1108, 1129, 1453
BsgI GTGCAG 2 cut(s) 1265, 1384
Bsh1236I CGCG 3 cut(s) 132, 204, 305
BshFI GGCC 5 cut(s) 455, 517, 885, 969, 1284
BsiSI CCGG 6 cut(s) 30, 47, 278, 357, 398, 425
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 4 cut(s) 236, 462, 991, 1355
BsmAI GTCTC 2 cut(s) 599, 848
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 5 cut(s) 455, 517, 885, 969, 1284
Bsp13I TCCGGA 1 cut(s) 424
Bsp1407I TGTACA 2 cut(s) 1087, 1417
Bsp143I GATC 3 cut(s) 778, 1447, 1518
BspANI GGCC 5 cut(s) 455, 517, 885, 969, 1284
BspCNI CTCAG 5 cut(s) 400, 463, 609, 777, 1453
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 3 cut(s) 132, 204, 305
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 5 cut(s) 25, 40, 355, 404, 911
BspMAI CTGCAG 2 cut(s) 1126, 1471
BspMI ACCTGC 2 cut(s) 238, 1115
BsrBI CCGCTC 2 cut(s) 77, 460
BsrDI GCAATG 1 cut(s) 1137
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 2 cut(s) 1087, 1417
BsrI ACTGG 4 cut(s) 346, 424, 985, 1285
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 398, 693, 1319
BssMI GATC 3 cut(s) 778, 1447, 1518
BssNI GRCGYC 3 cut(s) 33, 592, 1536
BssT1I CCWWGG 1 cut(s) 1319
Bst4CI ACNGT 8 cut(s) 526, 542, 560, 672, 838, 859, 1016, 1528
Bst6I CTCTTC 3 cut(s) 104, 1206, 1541
BstACI GRCGYC 3 cut(s) 33, 592, 1536
BstAUI TGTACA 2 cut(s) 1087, 1417
BstC8I GCNNGC 4 cut(s) 208, 453, 690, 1110
BstDEI CTNAG 8 cut(s) 408, 471, 596, 785, 921, 1218, 1385, 1461
BstDSI CCRYGG 1 cut(s) 693
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 1139, 1246
BstFNI CGCG 3 cut(s) 132, 204, 305
BstHHI GCGC 2 cut(s) 134, 206
BstKTI GATC 3 cut(s) 781, 1450, 1521
BstMAI GTCTC 2 cut(s) 599, 848
BstMBI GATC 3 cut(s) 778, 1447, 1518
BstNSI RCATGY 2 cut(s) 758, 1356
BstSCI CCNGG 2 cut(s) 355, 397
BstSFI CTRYAG 2 cut(s) 1122, 1467
BstUI CGCG 3 cut(s) 132, 204, 305
BstV1I GCAGC 5 cut(s) 376, 1063, 1108, 1129, 1453
BstXI CCANNNNNNTGG 1 cut(s) 893
Bsu36I CCTNAGG 1 cut(s) 408
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 5 cut(s) 455, 517, 885, 969, 1284
BtgI CCRYGG 1 cut(s) 693
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 1139, 1246
BtsI GCAGTG 2 cut(s) 541, 1292
BtsIMutI CAGTG 3 cut(s) 541, 668, 1292
BveI ACCTGC 2 cut(s) 238, 1115
Cac8I GCNNGC 4 cut(s) 208, 453, 690, 1110
CaiI CAGNNNCTG 2 cut(s) 857, 1130
CciI TCATGA 1 cut(s) 369
CfoI GCGC 2 cut(s) 134, 206
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 8 cut(s) 275, 353, 422, 516, 883, 1093, 1282, 1358
CseI GACGC 2 cut(s) 22, 1525
Csp6I GTAC 5 cut(s) 733, 1088, 1306, 1418, 1482
CviAII CATG 9 cut(s) 67, 370, 755, 802, 1097, 1310, 1353, 1477, 1488
CviQI GTAC 5 cut(s) 733, 1088, 1306, 1418, 1482
DdeI CTNAG 8 cut(s) 408, 471, 596, 785, 921, 1218, 1385, 1461
DpnI GATC 3 cut(s) 780, 1449, 1520
DpnII GATC 3 cut(s) 778, 1447, 1518
DraI TTTAAA 1 cut(s) 676
DraIII CACNNNGTG 1 cut(s) 1490
Eam1104I CTCTTC 3 cut(s) 104, 1206, 1541
EarI CTCTTC 3 cut(s) 104, 1206, 1541
EciI GGCGGA 2 cut(s) 61, 128
Eco130I CCWWGG 1 cut(s) 1319
Eco32I GATATC 2 cut(s) 1163, 1438
Eco47I GGWCC 5 cut(s) 275, 353, 422, 1093, 1358
Eco57I CTGAAG 4 cut(s) 219, 341, 1041, 1230
Eco81I CCTNAGG 1 cut(s) 408
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 1403
EcoRV GATATC 2 cut(s) 1163, 1438
EcoT14I CCWWGG 1 cut(s) 1319
EcoT22I ATGCAT 1 cut(s) 1139
ErhI CCWWGG 1 cut(s) 1319
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 9 cut(s) 70, 373, 758, 805, 1100, 1313, 1356, 1480, 1491
FaqI GGGAC 1 cut(s) 339
FatI CATG 9 cut(s) 66, 369, 754, 801, 1096, 1309, 1352, 1476, 1487
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 1 cut(s) 1518
FokI GGATG 2 cut(s) 1146, 1253
FspBI CTAG 1 cut(s) 513
GlaI GCGC 2 cut(s) 133, 205
GsuI CTGGAG 2 cut(s) 915, 1101
HaeIII GGCC 5 cut(s) 455, 517, 885, 969, 1284
HapII CCGG 6 cut(s) 30, 47, 278, 357, 398, 425
HgaI GACGC 2 cut(s) 22, 1525
HhaI GCGC 2 cut(s) 134, 206
Hin1I GRCGYC 3 cut(s) 33, 592, 1536
Hin1II CATG 9 cut(s) 70, 373, 758, 805, 1100, 1313, 1356, 1480, 1491
Hin6I GCGC 2 cut(s) 132, 204
HinP1I GCGC 2 cut(s) 132, 204
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 6 cut(s) 218, 285, 316, 494, 929, 1473
HpaII CCGG 6 cut(s) 30, 47, 278, 357, 398, 425
HphI GGTGA 8 cut(s) 44, 185, 271, 719, 826, 966, 1187, 1405
Hpy166II GTNNAC 3 cut(s) 760, 862, 1484
Hpy188I TCNGA 4 cut(s) 38, 214, 321, 909
Hpy8I GTNNAC 3 cut(s) 760, 862, 1484
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 989, 1058, 1216
HpyCH4III ACNGT 8 cut(s) 526, 542, 560, 672, 838, 859, 1016, 1528
HpyCH4IV ACGT 1 cut(s) 592
HpyF3I CTNAG 8 cut(s) 408, 471, 596, 785, 921, 1218, 1385, 1461
HpySE526I ACGT 1 cut(s) 592
Hsp92I GRCGYC 3 cut(s) 33, 592, 1536
Hsp92II CATG 9 cut(s) 70, 373, 758, 805, 1100, 1313, 1356, 1480, 1491
HspAI GCGC 2 cut(s) 132, 204
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 1518
Kzo9I GATC 3 cut(s) 778, 1447, 1518
LmnI GCTCC 5 cut(s) 23, 38, 215, 467, 659
Lsp1109I GCAGC 5 cut(s) 376, 1063, 1108, 1129, 1453
LweI GCATC 2 cut(s) 671, 1124
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 3 cut(s) 505, 536, 1114
MalI GATC 3 cut(s) 780, 1449, 1520
MbiI CCGCTC 2 cut(s) 77, 460
MboI GATC 3 cut(s) 778, 1447, 1518
MboII GAAGA 7 cut(s) 91, 94, 497, 623, 1223, 1457, 1558
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 2 cut(s) 16, 972
Mph1103I ATGCAT 1 cut(s) 1139
MroI TCCGGA 1 cut(s) 424
MseI TTAA 4 cut(s) 431, 549, 675, 902
MslI CAYNNNNRTG 2 cut(s) 65, 1351
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 6 cut(s) 30, 47, 278, 357, 398, 425
MspR9I CCNGG 2 cut(s) 357, 399
MvnI CGCG 3 cut(s) 132, 204, 305
NciI CCSGG 2 cut(s) 357, 399
NdeII GATC 3 cut(s) 778, 1447, 1518
NlaIII CATG 9 cut(s) 70, 373, 758, 805, 1100, 1313, 1356, 1480, 1491
NlaIV GGNNCC 5 cut(s) 25, 40, 355, 404, 911
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 1139
NspI RCATGY 2 cut(s) 758, 1356
PagI TCATGA 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 238
PciI ACATGT 2 cut(s) 754, 1352
PfeI GAWTC 5 cut(s) 218, 285, 316, 929, 1473
PflMI CCANNNNNTGG 2 cut(s) 991, 1355
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PscI ACATGT 2 cut(s) 754, 1352
PshBI ATTAAT 1 cut(s) 902
PspN4I GGNNCC 5 cut(s) 25, 40, 355, 404, 911
PspPI GGNCC 8 cut(s) 275, 353, 422, 516, 883, 1093, 1282, 1358
PstI CTGCAG 2 cut(s) 1126, 1471
PstNI CAGNNNCTG 2 cut(s) 857, 1130
RsaI GTAC 5 cut(s) 734, 1089, 1307, 1419, 1483
RsaNI GTAC 5 cut(s) 733, 1088, 1306, 1418, 1482
RseI CAYNNNNRTG 2 cut(s) 65, 1351
SaqAI TTAA 4 cut(s) 431, 549, 675, 902
Sau3AI GATC 3 cut(s) 778, 1447, 1518
Sau96I GGNCC 8 cut(s) 275, 353, 422, 516, 883, 1093, 1282, 1358
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 357, 399
SfaNI GCATC 2 cut(s) 671, 1124
SfcI CTRYAG 2 cut(s) 1122, 1467
SgrAI CRCCGGYG 1 cut(s) 29
SinI GGWCC 5 cut(s) 275, 353, 422, 1093, 1358
SmiMI CAYNNNNRTG 2 cut(s) 65, 1351
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 355, 397
StyI CCWWGG 1 cut(s) 1319
TaaI ACNGT 8 cut(s) 526, 542, 560, 672, 838, 859, 1016, 1528
TaiI ACGT 1 cut(s) 595
TaqI TCGA 4 cut(s) 751, 1155, 1407, 1440
TatI WGTACW 2 cut(s) 1087, 1417
TauI GCSGC 6 cut(s) 77, 296, 308, 328, 448, 451
TfiI GAWTC 5 cut(s) 218, 285, 316, 929, 1473
Tru1I TTAA 4 cut(s) 431, 549, 675, 902
Tru9I TTAA 4 cut(s) 431, 549, 675, 902
TscAI CASTG 3 cut(s) 541, 675, 1299
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 6 cut(s) 5, 364, 1076, 1121, 1142, 1466
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 7 cut(s) 231, 630, 1113, 1326, 1416, 1555, 1559
TspGWI ACGGA 3 cut(s) 395, 761, 1350
TspRI CASTG 3 cut(s) 541, 675, 1299
Van91I CCANNNNNTGG 2 cut(s) 991, 1355
VpaK11BI GGWCC 5 cut(s) 275, 353, 422, 1093, 1358
VspI ATTAAT 1 cut(s) 902
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 3 cut(s) 391, 617, 1403
XceI RCATGY 2 cut(s) 758, 1356
XspI CTAG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.