Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013489

Physical Location & Seq

Genomic Coordinates Forward (+)

28683496 .. 28684046

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTGCGGGCGTCAAGATAGGAGGAACCGCCATCGGCAACGGCACCGTTCCGACTCACCGAGTCACCATGTCCGCAGCTCTCCCTCTCCCTCACACTCTCTTCTTCCTCCGCACACTCCCCTCCCGCCCACGCGCCCTCCGCTCCACTCGCTCCCACTCTCTCCCCCTCCGAGCTTCCTCCACCGACTCTCCTCCAACTTCTTCTTCTTCTTCTCCAGGGCGAGAGGTGGAGAATGTGGTGATTATCGGTTCAGGACCGGCGGGATTCACAGCGGCAATCTACGCAGCTCGAGCGAATTTGAAGCCTCTGGTGTTTGAGGGATACCAGGCGGGTCCGGGTGGACAGTTGATGACGACTACTGAAGTCGAGAACTTCCCTGGATTCCCTGAAGGAATCACTGGTCCTGATTTGATGGACAAGTCTCTTTCTTTCTTTCAGTTGTTGCGAATTTCGGATTTGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009889 GO:0009987 GO:0010380 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019222 GO:0019725 GO:0030234 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044093 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051186 GO:0051187 GO:0051193 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0072593 GO:0080090 GO:0090056 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1901401 GO:1901463 GO:1990748 GO:2000112 GO:2000904

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2 Thioredoxin

Protein Analysis

156

Amino Acids

16.43

Weight (kDa)

9.68

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	79 - 134	3.9e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41680
fragaria_vesca	FvH4_6g24270 FvH4_6g24270 FvH4_6g24270
malus_domestica	MD00G1191800.v1.1 MD12G1076500.v1.1
prunus_persica	Prupe.7G056500_v2.0.a1
pyrus_communis	pycom12g06610
rosa_chinensis	RchiOBHm_Chr3g0482921
rosa_laevigata	RLG00000023317
rosa_multiflora	Rmu_ssc0000175.1_g000017
rosa_roxburghii	Rroxscaffold_6G00398840
rosa_rugosa	Rorug03G0202100
rosa_samantha	Rh3BG287500 Rh3BG287600 Rh3CG284900 Rh3DG280600
rosa_wichuraiana	Rw3G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	1 cut(s)	135
AciI	CCGC	9 cut(s)	8, 30, 75, 112, 127, 142, 263, 275, 332
AcsI	RAATTY	2 cut(s)	298, 450
AcuI	CTGAAG	2 cut(s)	384, 411
AcyI	GRCGYC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	217, 327, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	3 cut(s)	80, 176, 290
AluI	AGCT	3 cut(s)	80, 176, 290
Alw26I	GTCTC	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	291
ApeKI	GCWGC	3 cut(s)	5, 77, 287
ApoI	RAATTY	2 cut(s)	298, 450
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	257, 335, 404
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	3 cut(s)	50, 58, 253
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	3 cut(s)	257, 335, 404
BanI	GGYRCC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	89, 299
BccI	CCATC	2 cut(s)	41, 409
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	3 cut(s)	219, 329, 381
BciVI	GTATCC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	6, 78, 276, 288
BlsI	GCNGC	4 cut(s)	7, 79, 277, 289
Bme1390I	CCNGG	4 cut(s)	219, 329, 339, 381
Bme18I	GGWCC	3 cut(s)	257, 335, 404
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	3 cut(s)	257, 335, 404
BmiI	GGNNCC	3 cut(s)	28, 46, 336
BmrFI	CCNGG	4 cut(s)	219, 329, 339, 381
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	218, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 175, 205
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	3 cut(s)	219, 329, 381
BseDI	CCNNGG	2 cut(s)	218, 379
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	89, 299
Bsh1236I	CGCG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	260, 338
BsmAI	GTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	291
BspACI	CCGC	9 cut(s)	8, 30, 75, 112, 127, 142, 263, 275, 332
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	28, 46, 336
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	218, 379
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	3 cut(s)	219, 329, 381
Bst4CI	ACNGT	2 cut(s)	49, 348
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 150, 284, 293
BstNI	CCWGG	3 cut(s)	219, 329, 381
BstSCI	CCNGG	4 cut(s)	217, 327, 337, 379
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	89, 299
BsuI	GTATCC	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	257, 335, 404
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	5 cut(s)	5, 80, 176, 290, 307
CviKI_1	RGCY	5 cut(s)	5, 80, 176, 290, 307
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	257, 335, 404
Eco57I	CTGAAG	2 cut(s)	384, 411
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	217, 327, 379
FaeI	CATG	1 cut(s)	73
FaiI	YATR	3 cut(s)	71, 465, 467
FatI	CATG	1 cut(s)	69
FauI	CCCGC	3 cut(s)	134, 256, 325
Fnu4HI	GCNGC	4 cut(s)	6, 78, 276, 288
Fsp4HI	GCNGC	4 cut(s)	6, 78, 276, 288
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	6, 78, 276, 288
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	2 cut(s)	260, 338
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	6 cut(s)	55, 63, 188, 267, 384, 396
HpaII	CCGG	2 cut(s)	260, 338
HphI	GGTGA	3 cut(s)	50, 58, 253
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	54, 173, 457
Hpy188III	TCNNGA	4 cut(s)	16, 255, 370, 407
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	2 cut(s)	49, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 150, 284, 293
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	149, 158
Lsp1109I	GCAGC	2 cut(s)	89, 299
MaeIII	GTNAC	1 cut(s)	64
MbiI	CCGCTC	1 cut(s)	144
MboII	GAAGA	6 cut(s)	94, 97, 195, 198, 201, 204
MluCI	AATT	2 cut(s)	298, 450
MlyI	GAGTC	3 cut(s)	49, 72, 182
MmeI	TCCRAC	2 cut(s)	77, 221
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	260, 338
MspR9I	CCNGG	4 cut(s)	219, 329, 339, 381
MvaI	CCWGG	3 cut(s)	219, 329, 381
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	141, 150, 284, 293
NciI	CCSGG	1 cut(s)	339
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	3 cut(s)	28, 46, 336
NmuCI	GTSAC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	267, 384, 396
PkrI	GCNGC	4 cut(s)	7, 79, 277, 289
PleI	GAGTC	3 cut(s)	49, 71, 182
PpsI	GAGTC	3 cut(s)	49, 71, 182
Psp6I	CCWGG	3 cut(s)	217, 327, 379
PspGI	CCWGG	3 cut(s)	217, 327, 379
PspN4I	GGNNCC	3 cut(s)	28, 46, 336
PspPI	GGNCC	3 cut(s)	257, 335, 404
PspXI	VCTCGAGB	1 cut(s)	291
SatI	GCNGC	4 cut(s)	6, 78, 276, 288
Sau96I	GGNCC	3 cut(s)	257, 335, 404
SchI	GAGTC	3 cut(s)	49, 72, 182
ScrFI	CCNGG	4 cut(s)	219, 329, 339, 381
SetI	ASST	4 cut(s)	82, 178, 231, 292
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	3 cut(s)	257, 335, 404
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	298, 450
SsiI	CCGC	9 cut(s)	8, 30, 75, 112, 127, 142, 263, 275, 332
StyD4I	CCNGG	4 cut(s)	217, 327, 337, 379
TaaI	ACNGT	2 cut(s)	49, 348
TaqI	TCGA	2 cut(s)	292, 369
TasI	AATT	2 cut(s)	298, 450
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	267, 384, 396
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	5, 77, 287
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	257, 335, 404
XapI	RAATTY	2 cut(s)	298, 450
XhoI	CTCGAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.