Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013489

Physical Location & Seq

Genomic Coordinates Forward (+)

28684058 .. 28689038

Gene Structure 4981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG287600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTGAATAAGGAGGTCAACATTGTGGTTTTTTTGTGTAGGATGCGGCGGCAGGCGGAGCGGTGGGGAGCAGAGTTGTACCAGGAAGATGTTGAGTCCATTGACGTCAGAACTAGGCCCTTTACTGTCCAAAGCAGTGACCGTAAGGTTAAGTGCAACAGCCTAATTTTTGCCACAGGGGCTACTGCAAGACGTCTCAGGATACCCCGTGAAGATGAATTTTGGAGTAGGGGAATTAGTGCTTGTGCAATATGTGATGGAGCGTCACCACTGTTTAAAGGCCAAGTGCTTGCTGTTGTAGGAGGGGGTGATACAGCCACAGAGGAAGCTTTGTACCTTACCAAATATGCTCGACATGTTCACTTACTTGTACGTAGAGATCAAATGAGGGCTTCTAGAGCCATGCAAGATAGAGTGTACAACAACCCAAATATTACCGTGCACTTCAACACAGAGACTGTGGACATTGTTAGCAATACAAAGGGCCAGATGTCTGGAGTATTAATTCGGAACCTTGATACTAAGGAGGAATCTGTGATTGAAGCAAAGGGGTTATTTTATGGTATAGGCCATTCACCAAATAGCCAATTGTTGGAAGGTCAGGTTGAGCTTGACAGTTCTGGCTATGTCTTAGTAGAGGAGGGTACTTCAAAGACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTACAGGATCATGAATGGAGGCAAGCTGTAACTGCTGCAGGTTCTGGATGCATTGCTGCATTATCAGTTGAGAGATATCTTGTGGGCAAAAATCTCATTATTGAGTTTCACCAGCCCCAAACTGAAGAGGCTAAGAAGGAACTCACAGACAGGGATGTTCAAGAACATTTTGACATTACAATTACAAAGCATAAGGGCCAGTATGCCCTGCGAAAATTGTACCATGAAAGTCCAAGGCTTATATGTGTACTATATACAGCACCAACATGTGGTCCATGCAGGACATTGAAACCAATCCTTAGTAAGGTGATAGATGACTTTGACAAAAATGTACATTTCGTTGAAATTGATATCGAGGAAGATCAAGAAATAGCTGAGGCTGCAGGAATTATGGGTACACCATGTGTTCAGTTTTTCAAAAACAAGGAGATGATCAGAACTCTATCGGGGGTCAAGATGAAGAGCGAGTATAGAGATTTCATTGAAGCAAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009889 GO:0009987 GO:0010380 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019222 GO:0019725 GO:0030234 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044093 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051186 GO:0051187 GO:0051193 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0072593 GO:0080090 GO:0090056 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1901401 GO:1901463 GO:1990748 GO:2000112 GO:2000904

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2 Thioredoxin

Protein Analysis

394

Amino Acids

44.3

Weight (kDa)

6.0

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	26 - 245	6.2e-38	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	28 - 228	3.5e-17	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	97 - 170	2e-14	Pyridine nucleotide-disulphide oxidoreductase
Thioredoxin	PF00085	306 - 391	3.6e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41680
fragaria_vesca	FvH4_6g24270 FvH4_6g24270 FvH4_6g24270
malus_domestica	MD00G1191800.v1.1 MD12G1076500.v1.1
prunus_persica	Prupe.7G056500_v2.0.a1
pyrus_communis	pycom12g06610
rosa_chinensis	RchiOBHm_Chr3g0482921
rosa_laevigata	RLG00000023317
rosa_multiflora	Rmu_ssc0000175.1_g000017
rosa_roxburghii	Rroxscaffold_6G00398840
rosa_rugosa	Rorug03G0202100
rosa_samantha	Rh3BG287500 Rh3BG287600 Rh3CG284900 Rh3DG280600
rosa_wichuraiana	Rw3G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	108, 196
Acc36I	ACCTGC	1 cut(s)	716
AccB7I	CCANNNNNTGG	2 cut(s)	592, 956
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	4 cut(s)	46, 49, 56, 61
AclWI	GGATC	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	642, 831
AcyI	GRCGYC	2 cut(s)	105, 193
AdeI	CACNNNGTG	1 cut(s)	1091
AfiI	CCNNNNNNNGG	3 cut(s)	592, 956, 991
AflIII	ACRYGT	2 cut(s)	355, 953
AgsI	TTSAA	9 cut(s)	448, 542, 651, 665, 848, 976, 1031, 1105, 1172
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	329, 610, 713, 1061
AluI	AGCT	4 cut(s)	329, 610, 713, 1061
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	200, 449
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	702
AlwNI	CAGNNNCTG	2 cut(s)	458, 731
AoxI	GGCC	5 cut(s)	116, 280, 484, 568, 883
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	677, 722, 743, 1067
ApoI	RAATTY	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	503
AspS9I	GGNCC	4 cut(s)	117, 484, 883, 959
AsuHPI	GGTGA	6 cut(s)	16, 258, 320, 567, 788, 1006
AvaII	GGWCC	1 cut(s)	959
BaeGI	GKGCMC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	4 cut(s)	664, 709, 730, 1054
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	1119
BcoDI	GTCTC	2 cut(s)	200, 449
BfaI	CTAG	2 cut(s)	114, 396
BfmI	CTRYAG	2 cut(s)	723, 1068
BfuAI	ACCTGC	1 cut(s)	716
BfuI	GTATCC	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	6 cut(s)	47, 50, 678, 723, 744, 1068
BlsI	GCNGC	6 cut(s)	48, 51, 679, 724, 745, 1069
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	959
BmgT120I	GGNCC	4 cut(s)	117, 484, 883, 959
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	33, 725
BpmI	CTGGAG	2 cut(s)	516, 702
Bpu10I	CCTNAGC	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	105, 193
BsaJI	CCNNGG	1 cut(s)	920
Bsc4I	CCNNNNNNNGG	3 cut(s)	592, 956, 991
Bse1I	ACTGG	1 cut(s)	886
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	920
BseGI	GGATG	3 cut(s)	48, 740, 847
BseLI	CCNNNNNNNGG	3 cut(s)	592, 956, 991
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	211, 1053
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	1 cut(s)	653
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	664, 709, 730, 1054
BshFI	GGCC	5 cut(s)	118, 282, 486, 570, 885
BsiHKAI	GWGCWC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	592, 956, 991
BsmAI	GTCTC	2 cut(s)	200, 449
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	5 cut(s)	118, 282, 486, 570, 885
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	3 cut(s)	417, 688, 1018
Bsp143I	GATC	4 cut(s)	379, 694, 1048, 1119
BspACI	CCGC	4 cut(s)	46, 49, 56, 61
BspANI	GGCC	5 cut(s)	118, 282, 486, 570, 885
BspCNI	CTCAG	2 cut(s)	210, 1054
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	512
BspMAI	CTGCAG	2 cut(s)	727, 1072
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	702
BspQI	GCTCTTC	1 cut(s)	1142
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	738
BsrGI	TGTACA	3 cut(s)	417, 688, 1018
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	920
BssMI	GATC	4 cut(s)	379, 694, 1048, 1119
BssNI	GRCGYC	2 cut(s)	105, 193
BssT1I	CCWWGG	1 cut(s)	920
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	6 cut(s)	127, 143, 273, 439, 460, 617
Bst6I	CTCTTC	2 cut(s)	807, 1142
BstACI	GRCGYC	2 cut(s)	105, 193
BstAUI	TGTACA	3 cut(s)	417, 688, 1018
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	54, 291, 711
BstDEI	CTNAG	6 cut(s)	197, 522, 631, 819, 986, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	989
BstF5I	GGATG	3 cut(s)	48, 740, 847
BstKTI	GATC	4 cut(s)	382, 697, 1051, 1122
BstMAI	GTCTC	2 cut(s)	200, 449
BstMBI	GATC	4 cut(s)	379, 694, 1048, 1119
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 179, 398, 719, 1067
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	359, 957
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	723, 1068
BstSLI	GKGCMC	1 cut(s)	444
BstSNI	TACGTA	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	664, 709, 730, 1054
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	5 cut(s)	118, 282, 486, 570, 885
BtsCI	GGATG	3 cut(s)	48, 740, 847
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 269
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	3 cut(s)	54, 291, 711
CaiI	CAGNNNCTG	2 cut(s)	458, 731
CciI	TCATGA	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	117, 484, 883, 959
CseI	GACGC	1 cut(s)	252
CviAII	CATG	7 cut(s)	356, 403, 698, 911, 954, 963, 1089
DdeI	CTNAG	6 cut(s)	197, 522, 631, 819, 986, 1062
DpnI	GATC	4 cut(s)	381, 696, 1050, 1121
DpnII	GATC	4 cut(s)	379, 694, 1048, 1119
DraI	TTTAAA	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	1091
Eam1104I	CTCTTC	2 cut(s)	807, 1142
EarI	CTCTTC	2 cut(s)	807, 1142
EciI	GGCGGA	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	920
Eco32I	GATATC	2 cut(s)	764, 1039
Eco47I	GGWCC	1 cut(s)	959
Eco57I	CTGAAG	2 cut(s)	642, 831
EcoNI	CCTNNNNNAGG	1 cut(s)	989
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	2 cut(s)	764, 1039
EcoT14I	CCWWGG	1 cut(s)	920
EcoT22I	ATGCAT	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	920
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	7 cut(s)	359, 406, 701, 914, 957, 966, 1092
FatI	CATG	7 cut(s)	355, 402, 697, 910, 953, 962, 1088
FbaI	TGATCA	1 cut(s)	1119
Fnu4HI	GCNGC	6 cut(s)	47, 50, 678, 723, 744, 1068
FokI	GGATG	3 cut(s)	55, 747, 854
Fsp4HI	GCNGC	6 cut(s)	47, 50, 678, 723, 744, 1068
FspBI	CTAG	2 cut(s)	114, 396
GluI	GCNGC	6 cut(s)	47, 50, 678, 723, 744, 1068
GsuI	CTGGAG	2 cut(s)	516, 702
HaeIII	GGCC	5 cut(s)	118, 282, 486, 570, 885
HgaI	GACGC	1 cut(s)	252
Hin1I	GRCGYC	2 cut(s)	105, 193
Hin1II	CATG	7 cut(s)	359, 406, 701, 914, 957, 966, 1092
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	2 cut(s)	95, 530
HphI	GGTGA	6 cut(s)	16, 258, 320, 567, 788, 1006
Hpy166II	GTNNAC	7 cut(s)	19, 361, 418, 442, 463, 935, 1085
Hpy188I	TCNGA	3 cut(s)	110, 510, 1124
Hpy188III	TCNNGA	8 cut(s)	199, 396, 495, 698, 732, 848, 1052, 1141
Hpy8I	GTNNAC	7 cut(s)	19, 361, 418, 442, 463, 935, 1085
HpyAV	CCTTC	3 cut(s)	590, 659, 817
HpyCH4III	ACNGT	6 cut(s)	127, 143, 273, 439, 460, 617
HpyCH4IV	ACGT	3 cut(s)	105, 193, 373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 179, 398, 719, 1067
HpyF3I	CTNAG	6 cut(s)	197, 522, 631, 819, 986, 1062
HpySE526I	ACGT	3 cut(s)	105, 193, 373
Hsp92I	GRCGYC	2 cut(s)	105, 193
Hsp92II	CATG	7 cut(s)	359, 406, 701, 914, 957, 966, 1092
Ksp22I	TGATCA	1 cut(s)	1119
Kzo9I	GATC	4 cut(s)	379, 694, 1048, 1119
LguI	GCTCTTC	1 cut(s)	1142
LmnI	GCTCC	3 cut(s)	58, 68, 260
Lsp1109I	GCAGC	4 cut(s)	664, 709, 730, 1054
LweI	GCATC	2 cut(s)	33, 725
MaeI	CTAG	2 cut(s)	114, 396
MaeII	ACGT	3 cut(s)	105, 193, 373
MaeIII	GTNAC	3 cut(s)	137, 264, 715
MalI	GATC	4 cut(s)	381, 696, 1050, 1121
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	4 cut(s)	379, 694, 1048, 1119
MboII	GAAGA	5 cut(s)	98, 224, 824, 1058, 1159
MfeI	CAATTG	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	9 cut(s)	165, 218, 234, 504, 587, 867, 902, 1032, 1074
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	740
MseI	TTAA	3 cut(s)	150, 276, 503
MslI	CAYNNNNRTG	1 cut(s)	952
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	58, 179, 398, 719, 1067
NdeII	GATC	4 cut(s)	379, 694, 1048, 1119
NlaIII	CATG	7 cut(s)	359, 406, 701, 914, 957, 966, 1092
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	2 cut(s)	137, 264
NsiI	ATGCAT	1 cut(s)	740
NspI	RCATGY	2 cut(s)	359, 957
PagI	TCATGA	1 cut(s)	697
PciI	ACATGT	2 cut(s)	355, 953
PciSI	GCTCTTC	1 cut(s)	1142
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	2 cut(s)	592, 956
PkrI	GCNGC	6 cut(s)	48, 51, 679, 724, 745, 1069
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	2 cut(s)	355, 953
PshBI	ATTAAT	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	4 cut(s)	117, 484, 883, 959
PstI	CTGCAG	2 cut(s)	727, 1072
PstNI	CAGNNNCTG	2 cut(s)	458, 731
RseI	CAYNNNNRTG	1 cut(s)	952
SapI	GCTCTTC	1 cut(s)	1142
SaqAI	TTAA	3 cut(s)	150, 276, 503
SatI	GCNGC	6 cut(s)	47, 50, 678, 723, 744, 1068
Sau3AI	GATC	4 cut(s)	379, 694, 1048, 1119
Sau96I	GGNCC	4 cut(s)	117, 484, 883, 959
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	33, 725
SfcI	CTRYAG	2 cut(s)	723, 1068
SinI	GGWCC	1 cut(s)	959
SmiMI	CAYNNNNRTG	1 cut(s)	952
SnaBI	TACGTA	1 cut(s)	374
Sse9I	AATT	9 cut(s)	165, 218, 234, 504, 587, 867, 902, 1032, 1074
SsiI	CCGC	4 cut(s)	46, 49, 56, 61
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	114, 396
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	6 cut(s)	127, 143, 273, 439, 460, 617
TaiI	ACGT	3 cut(s)	108, 196, 376
TaqI	TCGA	2 cut(s)	352, 1041
TasI	AATT	9 cut(s)	165, 218, 234, 504, 587, 867, 902, 1032, 1074
TatI	WGTACW	4 cut(s)	417, 688, 934, 1018
TauI	GCSGC	2 cut(s)	49, 52
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	150, 276, 503
Tru9I	TTAA	3 cut(s)	150, 276, 503
TscAI	CASTG	2 cut(s)	142, 276
TseFI	GTSAC	2 cut(s)	137, 264
TseI	GCWGC	4 cut(s)	677, 722, 743, 1067
Tsp45I	GTSAC	2 cut(s)	137, 264
TspDTI	ATGAA	5 cut(s)	231, 714, 927, 1156, 1160
TspRI	CASTG	2 cut(s)	142, 276
Van91I	CCANNNNNTGG	2 cut(s)	592, 956
VneI	GTGCAC	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	959
VspI	ATTAAT	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	989
XapI	RAATTY	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	395
XceI	RCATGY	2 cut(s)	359, 957
XspI	CTAG	2 cut(s)	114, 396
ZraI	GACGTC	2 cut(s)	106, 194
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.