Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013489

Physical Location & Seq

Genomic Coordinates Forward (+)

28487279 .. 28494636

Gene Structure 7358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCTGCGGGCGTCAAGATAGGAACCGCCATCGGCAACGGCACCGGCACCGTTCCGACTCACCGAGTCACCATGTCCGCAGCTCTCCCTCTCCCTCACACTCTCTTCTTCCTCCGCACACTCCCCTCCCGCCCACGCGCCCTCCGCTCCACTCGCTCCCACTCTCTCCCCCTCAGAGCTTCCTCCTCCGACTCTCCTCCAGCTTCTTCTTCTTCTCCAGGGCGAGAGGTGGAGAATGTGGTGATTATCGGGTCAGGGCCGGCGGGATTCACAGCGGCAATCTACGCAGCTCGAGCGAATTTGAAGCCTCTGGTGTTTGAGGGATACCAGGCGGGTCCGGGTGGACAGTTGATGACGACTACTGAAGTCGAGAACTTCCCTGGATTCCCTGAAGGAATCACTGGTCCTGATTTGATGGACAGGATGCGGCGGCAGGCGGAGCGGTGGGGAGCAGAGTTGTACCAGGAAGATGTTGAGTCTATTGACGTCAGAACTAGGCCCTTTACTGTCCAAAGCAGTGACCGTAAGGTTAAGTGCAACAGTCTAATTTTTGCCACAGGGGCTACTGCAAGACGTCTCAGGATACCCCGTGAAGATGAATTTTGGAGTAGGGGAATTAGTGCTTGTGCAATATGTGATGGAGCATCACCACTGTTTAAAGGCCAAGTGCTTGCTGTTGTAGGAGGGGGTGATACAGCCACAGAGGAAGCTTTGTACCTTACCAAATATGCTCGACATGTTCACTTACTTGTACGTAGAGATCAAATGAGGGCTTCTAGAGCCATGCAAGATAGAGTGTACAACAACCCAAATATTACCGTGCACTTCAACACAGAGACTGTGGACATTGTTAGCAATACAAAGGGCCAGATGTCTGGAGTATTAATTCGGAACCTTGATACTAAGGAGGAATCTGTGATTGAAGCAAAGGGGTTATTTTATGGTATAGGCCATTCACCAAATAGCCAATTGTTGGAAGGTCAGGTTGAGCTTGACAGTTCTGGCTATGTCTTAGTAGAGGAGGGTACTTCAAAGACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTACAGGATCATGAATGGAGGCAAGCTGTAACTGCTGCAGGTTCTGGATGCATTGCTGCATTATCAGTTGAGAGATATCTTGTGGGCAAAAATCTCATTATTGAGTTTCACCAGCCCCAAACTGAAGAGGCTAAGAAGGAACTCACAGACAGGGATGTTCAAGAACATTTTGACATTACAATTACAAAGCATAAGGGCCAGGCATGTGTTCTTTTGCATATATGGAAGCATGATCTGATGATTTTTCTGTTTCCATATGTAGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009889 GO:0009987 GO:0010380 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019222 GO:0019725 GO:0030234 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044093 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051186 GO:0051187 GO:0051193 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0072593 GO:0080090 GO:0090056 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1901401 GO:1901463 GO:1990748 GO:2000112 GO:2000904

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2 Thioredoxin

Protein Analysis

445

Amino Acids

48.59

Weight (kDa)

6.51

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	79 - 372	8e-51	Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2	PF00890	80 - 311	3.9e-06	FAD binding domain
Pyr_redox_3	PF13738	154 - 355	3.4e-17	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	224 - 297	2.5e-14	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41680
fragaria_vesca	FvH4_6g24270 FvH4_6g24270 FvH4_6g24270
malus_domestica	MD00G1191800.v1.1 MD12G1076500.v1.1
prunus_persica	Prupe.7G056500_v2.0.a1
pyrus_communis	pycom12g06610
rosa_chinensis	RchiOBHm_Chr3g0482921
rosa_laevigata	RLG00000023317
rosa_multiflora	Rmu_ssc0000175.1_g000017
rosa_roxburghii	Rroxscaffold_6G00398840
rosa_rugosa	Rorug03G0202100
rosa_samantha	Rh3BG287500 Rh3BG287600 Rh3CG284900 Rh3DG280600
rosa_wichuraiana	Rw3G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	489, 577
Acc36I	ACCTGC	1 cut(s)	1097
AccB1I	GGYRCC	2 cut(s)	41, 47
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccBSI	CCGCTC	2 cut(s)	147, 442
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	1 cut(s)	1083
AcsI	RAATTY	2 cut(s)	298, 599
AcuI	CTGAAG	4 cut(s)	384, 411, 1023, 1212
AcyI	GRCGYC	3 cut(s)	12, 486, 574
AfaI	GTAC	6 cut(s)	461, 716, 753, 800, 1027, 1071
AfiI	CCNNNNNNNGG	1 cut(s)	973
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	6 cut(s)	304, 829, 923, 1032, 1046, 1229
AjnI	CCWGG	5 cut(s)	217, 327, 379, 462, 1266
AluBI	AGCT	7 cut(s)	83, 179, 203, 290, 710, 991, 1094
AluI	AGCT	7 cut(s)	83, 179, 203, 290, 710, 991, 1094
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	581, 830
Alw44I	GTGCAC	1 cut(s)	821
AlwI	GGATC	1 cut(s)	1083
AlwNI	CAGNNNCTG	2 cut(s)	839, 1112
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	6 cut(s)	257, 497, 661, 865, 949, 1264
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	6 cut(s)	5, 80, 287, 1058, 1103, 1124
ApoI	RAATTY	2 cut(s)	298, 599
AseI	ATTAAT	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	6 cut(s)	257, 335, 404, 498, 865, 1264
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	7 cut(s)	53, 61, 253, 639, 701, 948, 1169
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	335, 404
BaeGI	GKGCMC	1 cut(s)	825
BanI	GGYRCC	2 cut(s)	41, 47
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	5 cut(s)	92, 299, 1045, 1090, 1111
BccI	CCATC	3 cut(s)	38, 409, 632
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	5 cut(s)	219, 329, 381, 464, 1268
BciVI	GTATCC	2 cut(s)	317, 576
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	581, 830
BfaI	CTAG	2 cut(s)	495, 777
BfmI	CTRYAG	1 cut(s)	1104
BfuAI	ACCTGC	1 cut(s)	1097
BfuI	GTATCC	2 cut(s)	317, 576
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	9 cut(s)	6, 81, 276, 288, 428, 431, 1059, 1104, 1125
BlsI	GCNGC	9 cut(s)	7, 82, 277, 289, 429, 432, 1060, 1105, 1126
Bme1390I	CCNGG	6 cut(s)	219, 329, 339, 381, 464, 1268
Bme18I	GGWCC	2 cut(s)	335, 404
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	6 cut(s)	257, 335, 404, 498, 865, 1264
BmiI	GGNNCC	5 cut(s)	25, 43, 49, 336, 893
BmrFI	CCNGG	6 cut(s)	219, 329, 339, 381, 464, 1268
BmsI	GCATC	3 cut(s)	414, 653, 1106
BpmI	CTGGAG	4 cut(s)	183, 201, 897, 1083
BpuMI	CCSGG	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	755
BsaHI	GRCGYC	3 cut(s)	12, 486, 574
BsaJI	CCNNGG	2 cut(s)	218, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	973
Bse118I	RCCGGY	2 cut(s)	44, 259
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	1119
BseBI	CCWGG	5 cut(s)	219, 329, 381, 464, 1268
BseDI	CCNNGG	2 cut(s)	218, 379
BseGI	GGATG	3 cut(s)	429, 1121, 1228
BseLI	CCNNNNNNNGG	1 cut(s)	973
BseMI	GCAATG	1 cut(s)	1119
BseMII	CTCAG	2 cut(s)	187, 592
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	3 cut(s)	175, 186, 1034
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	5 cut(s)	92, 299, 1045, 1090, 1111
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	6 cut(s)	259, 499, 663, 867, 951, 1266
BshNI	GGYRCC	2 cut(s)	41, 47
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	45, 260, 338
BslI	CCNNNNNNNGG	1 cut(s)	973
BsmAI	GTCTC	2 cut(s)	581, 830
BsmBI	CGTCTC	1 cut(s)	581
BsnI	GGCC	6 cut(s)	259, 499, 663, 867, 951, 1266
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp1407I	TGTACA	2 cut(s)	798, 1069
Bsp143I	GATC	3 cut(s)	760, 1075, 1300
BspANI	GGCC	6 cut(s)	259, 499, 663, 867, 951, 1266
BspCNI	CTCAG	2 cut(s)	186, 591
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	5 cut(s)	25, 43, 49, 336, 893
BspMAI	CTGCAG	1 cut(s)	1108
BspMI	ACCTGC	1 cut(s)	1097
BspPI	GGATC	1 cut(s)	1083
BspT107I	GGYRCC	2 cut(s)	41, 47
BsrBI	CCGCTC	2 cut(s)	147, 442
BsrDI	GCAATG	1 cut(s)	1119
BsrFI	RCCGGY	2 cut(s)	44, 259
BsrGI	TGTACA	2 cut(s)	798, 1069
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	2 cut(s)	44, 259
BssECI	CCNNGG	2 cut(s)	218, 379
BssMI	GATC	3 cut(s)	760, 1075, 1300
BssNI	GRCGYC	3 cut(s)	12, 486, 574
Bst2UI	CCWGG	5 cut(s)	219, 329, 381, 464, 1268
Bst4CI	ACNGT	9 cut(s)	52, 348, 508, 524, 542, 654, 820, 841, 998
Bst6I	CTCTTC	2 cut(s)	110, 1188
BstACI	GRCGYC	3 cut(s)	12, 486, 574
BstAUI	TGTACA	2 cut(s)	798, 1069
BstBAI	YACGTR	1 cut(s)	755
BstC8I	GCNNGC	5 cut(s)	10, 261, 435, 672, 1092
BstDEI	CTNAG	5 cut(s)	173, 578, 903, 1012, 1200
BstF5I	GGATG	3 cut(s)	429, 1121, 1228
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	763, 1078, 1303
BstMAI	GTCTC	2 cut(s)	581, 830
BstMBI	GATC	3 cut(s)	760, 1075, 1300
BstMWI	GCNNNNNNNGC	8 cut(s)	144, 153, 284, 293, 439, 560, 779, 1100
BstNI	CCWGG	5 cut(s)	219, 329, 381, 464, 1268
BstNSI	RCATGY	2 cut(s)	740, 1275
BstSCI	CCNGG	6 cut(s)	217, 327, 337, 379, 462, 1266
BstSFI	CTRYAG	1 cut(s)	1104
BstSLI	GKGCMC	1 cut(s)	825
BstSNI	TACGTA	1 cut(s)	755
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	5 cut(s)	92, 299, 1045, 1090, 1111
BstXI	CCANNNNNNTGG	1 cut(s)	875
BsuI	GTATCC	2 cut(s)	317, 576
BsuRI	GGCC	6 cut(s)	259, 499, 663, 867, 951, 1266
BtsCI	GGATG	3 cut(s)	429, 1121, 1228
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	399, 523, 650
BveI	ACCTGC	1 cut(s)	1097
Cac8I	GCNNGC	5 cut(s)	10, 261, 435, 672, 1092
CaiI	CAGNNNCTG	2 cut(s)	839, 1112
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	2 cut(s)	44, 259
Cfr13I	GGNCC	6 cut(s)	257, 335, 404, 498, 865, 1264
Csp6I	GTAC	6 cut(s)	460, 715, 752, 799, 1026, 1070
CviAII	CATG	6 cut(s)	73, 737, 784, 1079, 1272, 1298
CviQI	GTAC	6 cut(s)	460, 715, 752, 799, 1026, 1070
DdeI	CTNAG	5 cut(s)	173, 578, 903, 1012, 1200
DpnI	GATC	3 cut(s)	762, 1077, 1302
DpnII	GATC	3 cut(s)	760, 1075, 1300
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	110, 1188
EarI	CTCTTC	2 cut(s)	110, 1188
EciI	GGCGGA	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	755
Eco32I	GATATC	1 cut(s)	1145
Eco47I	GGWCC	2 cut(s)	335, 404
Eco57I	CTGAAG	4 cut(s)	384, 411, 1023, 1212
Eco88I	CYCGRG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	5 cut(s)	217, 327, 379, 462, 1266
EcoRV	GATATC	1 cut(s)	1145
EcoT22I	ATGCAT	1 cut(s)	1121
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	6 cut(s)	76, 740, 787, 1082, 1275, 1301
FatI	CATG	6 cut(s)	72, 736, 783, 1078, 1271, 1297
FauI	CCCGC	3 cut(s)	137, 256, 325
FauNDI	CATATG	1 cut(s)	1324
Fnu4HI	GCNGC	9 cut(s)	6, 81, 276, 288, 428, 431, 1059, 1104, 1125
FokI	GGATG	3 cut(s)	436, 1128, 1235
Fsp4HI	GCNGC	9 cut(s)	6, 81, 276, 288, 428, 431, 1059, 1104, 1125
FspBI	CTAG	2 cut(s)	495, 777
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	9 cut(s)	6, 81, 276, 288, 428, 431, 1059, 1104, 1125
GsuI	CTGGAG	4 cut(s)	183, 201, 897, 1083
HaeIII	GGCC	6 cut(s)	259, 499, 663, 867, 951, 1266
HapII	CCGG	3 cut(s)	45, 260, 338
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	3 cut(s)	12, 486, 574
Hin1II	CATG	6 cut(s)	76, 740, 787, 1082, 1275, 1301
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	8 cut(s)	58, 66, 191, 267, 384, 396, 476, 911
HpaII	CCGG	3 cut(s)	45, 260, 338
HphI	GGTGA	7 cut(s)	53, 61, 253, 639, 701, 948, 1169
Hpy166II	GTNNAC	5 cut(s)	344, 742, 799, 823, 844
Hpy188I	TCNGA	6 cut(s)	57, 176, 190, 491, 891, 1305
Hpy188III	TCNNGA	9 cut(s)	16, 370, 407, 580, 777, 876, 1079, 1113, 1229
Hpy8I	GTNNAC	5 cut(s)	344, 742, 799, 823, 844
HpyAV	CCTTC	4 cut(s)	386, 971, 1040, 1198
HpyCH4III	ACNGT	9 cut(s)	52, 348, 508, 524, 542, 654, 820, 841, 998
HpyCH4IV	ACGT	3 cut(s)	486, 574, 754
HpyCH4V	TGCA	9 cut(s)	537, 569, 629, 787, 823, 1106, 1119, 1127, 1285
HpyF10VI	GCNNNNNNNGC	8 cut(s)	144, 153, 284, 293, 439, 560, 779, 1100
HpyF3I	CTNAG	5 cut(s)	173, 578, 903, 1012, 1200
HpySE526I	ACGT	3 cut(s)	486, 574, 754
Hsp92I	GRCGYC	3 cut(s)	12, 486, 574
Hsp92II	CATG	6 cut(s)	76, 740, 787, 1082, 1275, 1301
HspAI	GCGC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	760, 1075, 1300
LmnI	GCTCC	5 cut(s)	152, 161, 439, 449, 641
Lsp1109I	GCAGC	5 cut(s)	92, 299, 1045, 1090, 1111
LweI	GCATC	3 cut(s)	414, 653, 1106
MaeI	CTAG	2 cut(s)	495, 777
MaeII	ACGT	3 cut(s)	486, 574, 754
MaeIII	GTNAC	3 cut(s)	67, 518, 1096
MalI	GATC	3 cut(s)	762, 1077, 1302
MbiI	CCGCTC	2 cut(s)	147, 442
MboI	GATC	3 cut(s)	760, 1075, 1300
MboII	GAAGA	8 cut(s)	97, 100, 198, 201, 204, 479, 605, 1205
MfeI	CAATTG	1 cut(s)	968
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	7 cut(s)	298, 546, 599, 615, 885, 968, 1248
MlyI	GAGTC	4 cut(s)	52, 75, 185, 485
MmeI	TCCRAC	3 cut(s)	80, 213, 954
Mph1103I	ATGCAT	1 cut(s)	1121
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	4 cut(s)	531, 657, 884, 1336
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	45, 260, 338
MspR9I	CCNGG	6 cut(s)	219, 329, 339, 381, 464, 1268
MunI	CAATTG	1 cut(s)	968
MvaI	CCWGG	5 cut(s)	219, 329, 381, 464, 1268
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	8 cut(s)	144, 153, 284, 293, 439, 560, 779, 1100
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	1324
NdeII	GATC	3 cut(s)	760, 1075, 1300
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	76, 740, 787, 1082, 1275, 1301
NlaIV	GGNNCC	5 cut(s)	25, 43, 49, 336, 893
NmuCI	GTSAC	2 cut(s)	67, 518
NsiI	ATGCAT	1 cut(s)	1121
NspI	RCATGY	2 cut(s)	740, 1275
PaeR7I	CTCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	267, 384, 396, 911
PflMI	CCANNNNNTGG	1 cut(s)	973
PkrI	GCNGC	9 cut(s)	7, 82, 277, 289, 429, 432, 1060, 1105, 1126
PleI	GAGTC	4 cut(s)	52, 74, 185, 484
PpsI	GAGTC	4 cut(s)	52, 74, 185, 484
Ppu21I	YACGTR	1 cut(s)	755
PscI	ACATGT	1 cut(s)	736
PshBI	ATTAAT	1 cut(s)	884
Psp6I	CCWGG	5 cut(s)	217, 327, 379, 462, 1266
PspGI	CCWGG	5 cut(s)	217, 327, 379, 462, 1266
PspN4I	GGNNCC	5 cut(s)	25, 43, 49, 336, 893
PspPI	GGNCC	6 cut(s)	257, 335, 404, 498, 865, 1264
PspXI	VCTCGAGB	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	2 cut(s)	839, 1112
RsaI	GTAC	6 cut(s)	461, 716, 753, 800, 1027, 1071
RsaNI	GTAC	6 cut(s)	460, 715, 752, 799, 1026, 1070
SaqAI	TTAA	4 cut(s)	531, 657, 884, 1336
SatI	GCNGC	9 cut(s)	6, 81, 276, 288, 428, 431, 1059, 1104, 1125
Sau3AI	GATC	3 cut(s)	760, 1075, 1300
Sau96I	GGNCC	6 cut(s)	257, 335, 404, 498, 865, 1264
SchI	GAGTC	4 cut(s)	52, 75, 185, 485
ScrFI	CCNGG	6 cut(s)	219, 329, 339, 381, 464, 1268
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	3 cut(s)	414, 653, 1106
SfcI	CTRYAG	1 cut(s)	1104
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	335, 404
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SnaBI	TACGTA	1 cut(s)	755
Sse9I	AATT	7 cut(s)	298, 546, 599, 615, 885, 968, 1248
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	495, 777
StyD4I	CCNGG	6 cut(s)	217, 327, 337, 379, 462, 1266
TaaI	ACNGT	9 cut(s)	52, 348, 508, 524, 542, 654, 820, 841, 998
TaiI	ACGT	3 cut(s)	489, 577, 757
TaqI	TCGA	3 cut(s)	292, 369, 733
TasI	AATT	7 cut(s)	298, 546, 599, 615, 885, 968, 1248
TatI	WGTACW	2 cut(s)	798, 1069
TauI	GCSGC	3 cut(s)	278, 430, 433
TfiI	GAWTC	4 cut(s)	267, 384, 396, 911
Tru1I	TTAA	4 cut(s)	531, 657, 884, 1336
Tru9I	TTAA	4 cut(s)	531, 657, 884, 1336
TscAI	CASTG	3 cut(s)	406, 523, 657
TseFI	GTSAC	2 cut(s)	67, 518
TseI	GCWGC	6 cut(s)	5, 80, 287, 1058, 1103, 1124
Tsp45I	GTSAC	2 cut(s)	67, 518
TspDTI	ATGAA	2 cut(s)	612, 1095
TspRI	CASTG	3 cut(s)	406, 523, 657
Van91I	CCANNNNNTGG	1 cut(s)	973
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	2 cut(s)	335, 404
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	2 cut(s)	298, 599
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	2 cut(s)	740, 1275
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	2 cut(s)	495, 777
ZraI	GACGTC	2 cut(s)	487, 575
Zsp2I	ATGCAT	1 cut(s)	1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.