Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013489

Physical Location & Seq

Genomic Coordinates Reverse (-)

9298898 .. 9299821

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1076500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAATGTAGTGATAATTGGGTCAGGCCCGGGTGGATTCACGGCGGCAATATACGCAGCTCGAGCGAATCTGAAGCTGCTAGTGTTCGAGGGGTACCAATCCGGTCCGGGACGACAGTTGACGACCACTACTGAAGTTGAGAACTTCCCGGGATTCCCAGAAGGGATTATGGGTTCGGATTTAATGGAGAGGATGCGGAAACAAGCGGAGCGGTGGGGAGCAGAGCTGTACCAAGAAGATGTTGAGTCTATTGATGTCAAAACTAGACCTTTTACTGTAGAGAGCAGAGAACGTAAGCCCGTTACTGAAGAGGCTAAGAAGGAACACTCAAGCAGGGATGTTCAAGAAGCGTTTGACATTACTCTTACAAAGCACCGTGGCCAGGCATGTGATCTTTTGCCTATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009889 GO:0009987 GO:0010380 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019222 GO:0019725 GO:0030234 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044093 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051186 GO:0051187 GO:0051193 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0072593 GO:0080090 GO:0090056 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1901401 GO:1901463 GO:1990748 GO:2000112 GO:2000904

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2 Thioredoxin

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

5.27

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	1 - 98	3.8e-10	Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored	PF12831	3 - 34	6.5e-06	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41680
fragaria_vesca	FvH4_6g24270 FvH4_6g24270 FvH4_6g24270
malus_domestica	MD00G1191800.v1.1 MD12G1076500.v1.1
prunus_persica	Prupe.7G056500_v2.0.a1
pyrus_communis	pycom12g06610
rosa_chinensis	RchiOBHm_Chr3g0482921
rosa_laevigata	RLG00000023317
rosa_multiflora	Rmu_ssc0000175.1_g000017
rosa_roxburghii	Rroxscaffold_6G00398840
rosa_rugosa	Rorug03G0202100
rosa_samantha	Rh3BG287500 Rh3BG287600 Rh3CG284900 Rh3DG280600
rosa_wichuraiana	Rw3G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	211
AciI	CCGC	4 cut(s)	44, 196, 206, 211
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	3 cut(s)	92, 153, 327
AfaI	GTAC	2 cut(s)	95, 230
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	2 cut(s)	157, 189
AluBI	AGCT	3 cut(s)	59, 76, 226
AluI	AGCT	3 cut(s)	59, 76, 226
Ama87I	CYCGRG	3 cut(s)	28, 60, 148
AoxI	GGCC	2 cut(s)	25, 379
ApeKI	GCWGC	2 cut(s)	56, 76
Asp718I	GGTACC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	26, 104
AsuC2I	CCSGG	5 cut(s)	29, 30, 108, 149, 150
AvaI	CYCGRG	3 cut(s)	28, 60, 148
AvaII	GGWCC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	63, 68
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	5 cut(s)	29, 30, 108, 149, 150
BfaI	CTAG	3 cut(s)	80, 264, 409
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	3 cut(s)	45, 57, 77
BlsI	GCNGC	3 cut(s)	46, 58, 78
Bme1390I	CCNGG	6 cut(s)	29, 30, 108, 149, 150, 383
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	3 cut(s)	28, 60, 148
BmgT120I	GGNCC	2 cut(s)	26, 104
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	6 cut(s)	29, 30, 108, 149, 150, 383
BmsI	GCATC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	313
BpuMI	CCSGG	5 cut(s)	29, 30, 108, 149, 150
BsaJI	CCNNGG	3 cut(s)	28, 148, 376
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	3 cut(s)	28, 148, 376
BseGI	GGATG	2 cut(s)	198, 343
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	63, 68
BshFI	GGCC	2 cut(s)	27, 381
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	3 cut(s)	28, 60, 148
BsiSI	CCGG	4 cut(s)	29, 102, 107, 149
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	27, 381
BsoBI	CYCGRG	3 cut(s)	28, 60, 148
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	4 cut(s)	44, 196, 206, 211
BspANI	GGCC	2 cut(s)	27, 381
BspLI	GGNNCC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	28, 148, 376
BssMI	GATC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	117, 277, 377
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	198, 343
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 62
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	6 cut(s)	27, 28, 106, 147, 148, 381
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	63, 68
BsuRI	GGCC	2 cut(s)	27, 381
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	198, 343
Cfr13I	GGNCC	2 cut(s)	26, 104
Cfr9I	CCCGGG	2 cut(s)	28, 148
CpoI	CGGWCCG	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	94, 229
CspI	CGGWCCG	1 cut(s)	104
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	7 cut(s)	27, 59, 76, 226, 298, 314, 381
CviKI_1	RGCY	7 cut(s)	27, 59, 76, 226, 298, 314, 381
CviQI	GTAC	2 cut(s)	94, 229
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	3 cut(s)	92, 153, 327
Eco88I	CYCGRG	3 cut(s)	28, 60, 148
EcoRII	CCWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	390
FaiI	YATR	3 cut(s)	52, 170, 388
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	1 cut(s)	386
Fnu4HI	GCNGC	3 cut(s)	45, 57, 77
FokI	GGATG	2 cut(s)	205, 350
Fsp4HI	GCNGC	3 cut(s)	45, 57, 77
FspBI	CTAG	3 cut(s)	80, 264, 409
GluI	GCNGC	3 cut(s)	45, 57, 77
HaeIII	GGCC	2 cut(s)	27, 381
HapII	CCGG	4 cut(s)	29, 102, 107, 149
Hin1II	CATG	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	36, 67, 153, 245
HpaII	CCGG	4 cut(s)	29, 102, 107, 149
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	72, 178
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	155, 313
HpyCH4III	ACNGT	3 cut(s)	117, 277, 377
HpyCH4IV	ACGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 62
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	208, 218
LpnPI	CCDG	9 cut(s)	9, 42, 115, 120, 162, 171, 319, 368, 395
Lsp1109I	GCAGC	2 cut(s)	63, 68
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	80, 264, 409
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	248, 320
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	82, 183, 304
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	4 cut(s)	29, 102, 107, 149
MspR9I	CCNGG	6 cut(s)	29, 30, 108, 149, 150, 383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	53, 62
NciI	CCSGG	5 cut(s)	29, 30, 108, 149, 150
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	36, 67, 153
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	46, 58, 78
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	26, 104
PspXI	VCTCGAGB	1 cut(s)	60
RsaI	GTAC	2 cut(s)	95, 230
RsaNI	GTAC	2 cut(s)	94, 229
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	45, 57, 77
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	26, 104
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	6 cut(s)	29, 30, 108, 149, 150, 383
SetI	ASST	5 cut(s)	61, 78, 228, 271, 295
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	60
SmaI	CCCGGG	2 cut(s)	30, 150
SmlI	CTYRAG	2 cut(s)	60, 328
SmoI	CTYRAG	2 cut(s)	60, 328
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	4 cut(s)	44, 196, 206, 211
SspMI	CTAG	3 cut(s)	80, 264, 409
StyD4I	CCNGG	6 cut(s)	27, 28, 106, 147, 148, 381
TaaI	ACNGT	3 cut(s)	117, 277, 377
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	61, 87
TasI	AATT	1 cut(s)	15
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	36, 67, 153
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	56, 76
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	2 cut(s)	28, 148
VpaK11BI	GGWCC	1 cut(s)	104
XceI	RCATGY	1 cut(s)	390
XhoI	CTCGAG	1 cut(s)	60
XmaI	CCCGGG	2 cut(s)	28, 148
XspI	CTAG	3 cut(s)	80, 264, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.