FvH4_6g25230

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000754
Physical Location & Seq
Reverse (-)
19125974 .. 19130581
4608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25230.t17

Sequence Viewer

Length: 1794 bp
ATGTCTGTATGCTCTATGAAGCATAAAAGTGCTAAGTTGCTTCCTTCATTAGATGCCTTTGAGAATGTAGGAGAAGCGTTAGGTGCAGCTGTTCAGTCAGGGGGTGGAAATAGTGAAGCCAAGAGATGTCTGAGCAATTATATACACCGGGTGAGCAGATTTTTGTCAGAGTTTTGGAGCAAATGGATGAACCAGCAAATGGTTGGCAATGGTTTGAACTCCGAAAATAAGACTACTGACTCTGTTCTAACAGTATCAAAAACTGTAAACAATTCTTTACAAACTGATGAATGTGAAGTAGGAGAGAAAGGCGTGGAAAGTTCTTGTCTAACTTCTTTGCATCTTTCTCTAGAAGAAGGTTCACATGAGCAAGTGTCTTGTGAAGAGATGTGTGATTCTGAATTTCCGGAACAGTTGTCTTCAAGGCAGTCCTTGAATAACTCACCTAATGACATGGTTAACCATGCAGTTGAGGAGGAAACAGACACAGAGGATTTCATATCAACTGCTTTGCAGTCTATTGGGATACCAAGGACTCTAGAAGAAAATGAGAAGAACCCAGAATATGGATGCTCAATCAAGCTTAGTAGTACAAGTTTTAGTGCTTCAGTAGATGTAGGTGTAGTAGCGTCAGGTGTAACAATTCCGTTGGCGGGTGAAATTAATGTATCAAAGACATGTCCGAGAAATCCTGGAGGCAGAGTATCTGGAGATTTGTCAATAATTACAAGAAGCAAAGGTGAGACGAAGCAAATTGTTGGCAATGGATTGAACTCTGAACAAAATACAGTGGACTCTGTACCAGCAGTTGAATCAGTGAGCACTACTTCACAAAGTGTGGATTATGAAGTTGGAGGGAGACAGATGTTTGAATCGTTTCTCTCTTGTTGTCAAAGGGCTGAAGGTCTAATTAATTCTAGTCCAACTTTTGTGCATTTTGCTCGCGAAACTCCTAATGAGAAGGTCCATTGTGAAGATAGGCTTGATGTTGAAGGTCCAAAACAGATTACTACAAACCTGTCCTCAGATAGCACCATTGATGACTCAAAAGTTGATGATTTAATGAACCATGCTGCTGAAGTGGAATTAGACATCGAGAATATTGGATTAACTGAGTTTCAGTCTTTTGGGAGACCACAGACAAGAGAAGAAAATGAGACTGCAACAGAAGCCCTTGAGGTTCAAGAAGAGGTGAACAGTAAAAAAGAGGTATCTCTTTCCGCTTTAAAGGCGAACACAAAGAAGAAACACGTATCTGCTTCTTTGGAGGGGAGCAAGAAAAGAACATCAACTCCTTCGACTCTGGAGGTGAACAATAAAGAAAAGGTATCTCTTTCCACTACGAAGGTGAACACAAAGAAAAGAAAGGCATCTCCTTCCACATCGAAGGTGAGCAAGAAAAATAAGTTGAGTCCTTCGACTCTGGAGGTGAATAAGAAAAGAACATCAACTCCTTTGACTCTGGAGGTGAACAATAAAGAAAAGGTATCTCTTTCCACTACGAAGGTGAACACAAAGAAAAGAAAGGCATCTCCTTCCACATCGGAGGTGAGCAAGAAAAATAAGTTGAGTCCTTCGATTCTGGAGCTGTATAGTATTATTTCTCCAGAATCTTTGAGTACCGGGCGGTCAAGATCAGGCAGACTATTGCTACGGCCCTTAGAGTTCTGGCGCAACCAGTCACCAGTTTATGACAAGGTGCCTTATGATCTATTTTTACTTTCGTGTGTGTGGTTTGATGACTATTGTCTCTTGAGCTTTAGCCTTAGTGACGCATTGACTCGGTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

598

Amino Acids

65.43

Weight (kDa)

5.58

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 19 - 108 1.9e-20 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1785
AccB1I GGYRCC 2 cut(s) 1699, 1785
AccB7I CCANNNNNTGG 2 cut(s) 199, 566
AccII CGCG 1 cut(s) 945
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 3 cut(s) 653, 1221, 1627
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 3 cut(s) 591, 921, 1098
AdeI CACNNNGTG 2 cut(s) 151, 836
AfaI GTAC 4 cut(s) 592, 801, 1621, 1787
AfiI CCNNNNNNNGG 3 cut(s) 199, 566, 653
AflIII ACRYGT 2 cut(s) 677, 1249
AgsI TTSAA 8 cut(s) 217, 423, 436, 772, 812, 872, 992, 1184
AjnI CCWGG 1 cut(s) 691
AloI GAACNNNNNNTCC 4 cut(s) 1276, 1308, 1435, 1467
AluBI AGCT 4 cut(s) 89, 583, 1588, 1758
AluI AGCT 4 cut(s) 89, 583, 1588, 1758
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 5 cut(s) 737, 853, 1126, 1151, 1754
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 1655
ApeKI GCWGC 2 cut(s) 86, 1073
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 2 cut(s) 663, 912
Asp700I GAANNNNTTC 1 cut(s) 876
Asp718I GGTACC 1 cut(s) 1785
AspLEI GCGC 1 cut(s) 1674
AspS9I GGNCC 3 cut(s) 964, 995, 1656
AsuC2I CCSGG 2 cut(s) 149, 1624
AvaII GGWCC 2 cut(s) 964, 995
BanI GGYRCC 2 cut(s) 1699, 1785
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 98, 1060
BceAI ACGGC 1 cut(s) 1670
BcgI CGANNNNNNTGC 2 cut(s) 923, 957
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 519
BcnI CCSGG 2 cut(s) 149, 1624
BcoDI GTCTC 5 cut(s) 737, 853, 1126, 1151, 1754
BfaI CTAG 3 cut(s) 350, 539, 918
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 2 cut(s) 87, 1074
BlsI GCNGC 2 cut(s) 88, 1075
Bme1390I CCNGG 3 cut(s) 149, 693, 1624
Bme18I GGWCC 2 cut(s) 964, 995
BmgT120I GGNCC 3 cut(s) 964, 995, 1656
BmiI GGNNCC 2 cut(s) 1701, 1787
BmrFI CCNGG 3 cut(s) 149, 693, 1624
BmsI GCATC 5 cut(s) 43, 349, 560, 1379, 1538
BoxI GACNNNNGTC 1 cut(s) 1746
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 7 cut(s) 714, 729, 1325, 1445, 1484, 1590, 1604
BpuEI CTTGAG 2 cut(s) 1196, 1774
BpuMI CCSGG 2 cut(s) 149, 1624
BsaAI YACGTR 1 cut(s) 1252
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 1 cut(s) 530
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 6 cut(s) 687, 717, 1276, 1306, 1435, 1465
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 566, 653
Bse1I ACTGG 2 cut(s) 1678, 1685
Bse3DI GCAATG 2 cut(s) 214, 769
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 2 cut(s) 192, 575
BseLI CCNNNNNNNGG 3 cut(s) 199, 566, 653
BseMI GCAATG 2 cut(s) 214, 769
BseMII CTCAG 3 cut(s) 122, 1038, 1104
BseNI ACTGG 2 cut(s) 1678, 1685
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 98, 1060
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 945
BshFI GGCC 1 cut(s) 1657
BshNI GGYRCC 2 cut(s) 1699, 1785
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 3 cut(s) 148, 407, 1623
BslI CCNNNNNNNGG 3 cut(s) 199, 566, 653
BsmAI GTCTC 5 cut(s) 737, 853, 1126, 1151, 1754
BsmBI CGTCTC 1 cut(s) 737
BsnI GGCC 1 cut(s) 1657
Bso31I GGTCTC 1 cut(s) 1126
Bsp1286I GDGCHC 1 cut(s) 824
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 2 cut(s) 1634, 1708
Bsp68I TCGCGA 1 cut(s) 945
BspACI CCGC 3 cut(s) 653, 1221, 1627
BspANI GGCC 1 cut(s) 1657
BspCNI CTCAG 3 cut(s) 123, 1037, 1105
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 1701, 1787
BspT107I GGYRCC 2 cut(s) 1699, 1785
BspTNI GGTCTC 1 cut(s) 1126
BsrDI GCAATG 2 cut(s) 214, 769
BsrI ACTGG 2 cut(s) 1678, 1685
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 2 cut(s) 1634, 1708
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 5 cut(s) 253, 265, 414, 790, 1199
Bst6I CTCTTC 2 cut(s) 378, 1182
BstBAI YACGTR 1 cut(s) 1252
BstC8I GCNNGC 1 cut(s) 943
BstDEI CTNAG 7 cut(s) 33, 131, 584, 1024, 1113, 1660, 1766
BstF5I GGATG 2 cut(s) 192, 575
BstFNI CGCG 1 cut(s) 945
BstHHI GCGC 1 cut(s) 1674
BstKTI GATC 2 cut(s) 1637, 1711
BstMAI GTCTC 5 cut(s) 737, 853, 1126, 1151, 1754
BstMBI GATC 2 cut(s) 1634, 1708
BstMWI GCNNNNNNNGC 3 cut(s) 83, 1169, 1229
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 1 cut(s) 681
BstPAI GACNNNNGTC 1 cut(s) 1746
BstSCI CCNGG 3 cut(s) 147, 691, 1622
BstUI CGCG 1 cut(s) 945
BstV1I GCAGC 2 cut(s) 98, 1060
BstV2I GAAGAC 1 cut(s) 411
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 1 cut(s) 1657
BtsCI GGATG 2 cut(s) 192, 575
BtsIMutI CAGTG 2 cut(s) 795, 822
BtuMI TCGCGA 1 cut(s) 945
Cac8I GCNNGC 1 cut(s) 943
CfoI GCGC 1 cut(s) 1674
Cfr13I GGNCC 3 cut(s) 964, 995, 1656
CseI GACGC 2 cut(s) 618, 1781
Csp6I GTAC 4 cut(s) 591, 800, 1620, 1786
CviAII CATG 5 cut(s) 365, 454, 464, 678, 1070
CviQI GTAC 4 cut(s) 591, 800, 1620, 1786
DdeI CTNAG 7 cut(s) 33, 131, 584, 1024, 1113, 1660, 1766
DpnI GATC 2 cut(s) 1636, 1710
DpnII GATC 2 cut(s) 1634, 1708
DraI TTTAAA 1 cut(s) 1227
DraIII CACNNNGTG 2 cut(s) 151, 836
Eam1104I CTCTTC 2 cut(s) 378, 1182
EarI CTCTTC 2 cut(s) 378, 1182
Eco130I CCWWGG 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 964, 995
Eco57I CTGAAG 3 cut(s) 591, 921, 1098
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 530
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 5 cut(s) 368, 457, 467, 681, 1073
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FatI CATG 5 cut(s) 364, 453, 463, 677, 1069
FauI CCCGC 1 cut(s) 646
Fnu4HI GCNGC 2 cut(s) 87, 1074
FokI GGATG 2 cut(s) 199, 582
Fsp4HI GCNGC 2 cut(s) 87, 1074
FspBI CTAG 3 cut(s) 350, 539, 918
GlaI GCGC 1 cut(s) 1673
GluI GCNGC 2 cut(s) 87, 1074
GsuI CTGGAG 7 cut(s) 714, 729, 1325, 1445, 1484, 1590, 1604
HaeIII GGCC 1 cut(s) 1657
HapII CCGG 3 cut(s) 148, 407, 1623
HgaI GACGC 2 cut(s) 618, 1781
HhaI GCGC 1 cut(s) 1674
Hin1II CATG 5 cut(s) 368, 457, 467, 681, 1073
Hin6I GCGC 1 cut(s) 1672
HinP1I GCGC 1 cut(s) 1672
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 581
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 3 cut(s) 148, 407, 1623
Hpy166II GTNNAC 9 cut(s) 268, 362, 460, 793, 1195, 1312, 1351, 1471, 1510
Hpy188I TCNGA 9 cut(s) 132, 169, 223, 400, 684, 778, 1027, 1546, 1793
Hpy8I GTNNAC 9 cut(s) 268, 362, 460, 793, 1195, 1312, 1351, 1471, 1510
HpyCH4III ACNGT 5 cut(s) 253, 265, 414, 790, 1199
HpyCH4IV ACGT 1 cut(s) 1251
HpyCH4V TGCA 6 cut(s) 86, 340, 467, 514, 934, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 1169, 1229
HpyF3I CTNAG 7 cut(s) 33, 131, 584, 1024, 1113, 1660, 1766
HpySE526I ACGT 1 cut(s) 1251
Hsp92II CATG 5 cut(s) 368, 457, 467, 681, 1073
HspAI GCGC 1 cut(s) 1672
Kpn2I TCCGGA 1 cut(s) 406
KpnI GGTACC 1 cut(s) 1789
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 1634, 1708
LmnI GCTCC 3 cut(s) 177, 1272, 1585
Lsp1109I GCAGC 2 cut(s) 98, 1060
LweI GCATC 5 cut(s) 43, 349, 560, 1379, 1538
MaeI CTAG 3 cut(s) 350, 539, 918
MaeII ACGT 1 cut(s) 1251
MaeIII GTNAC 3 cut(s) 637, 1680, 1769
MalI GATC 2 cut(s) 1636, 1710
MboI GATC 2 cut(s) 1634, 1708
MboII GAAGA 9 cut(s) 365, 395, 411, 554, 565, 986, 1160, 1199, 1255
MhlI GDGCHC 1 cut(s) 824
MmeI TCCRAC 2 cut(s) 832, 947
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 6 cut(s) 459, 663, 912, 1061, 1109, 1226
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 3 cut(s) 148, 407, 1623
MspR9I CCNGG 3 cut(s) 149, 693, 1624
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 945
MwoI GCNNNNNNNGC 3 cut(s) 83, 1169, 1229
NciI CCSGG 2 cut(s) 149, 1624
NdeII GATC 2 cut(s) 1634, 1708
NlaIII CATG 5 cut(s) 368, 457, 467, 681, 1073
NlaIV GGNNCC 2 cut(s) 1701, 1787
NmuCI GTSAC 2 cut(s) 1680, 1769
NruI TCGCGA 1 cut(s) 945
NspI RCATGY 1 cut(s) 681
PciI ACATGT 1 cut(s) 677
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 395, 812, 872, 1579, 1610
PflMI CCANNNNNTGG 2 cut(s) 199, 566
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 2 cut(s) 88, 1075
Ppu21I YACGTR 1 cut(s) 1252
PscI ACATGT 1 cut(s) 677
PshAI GACNNNNGTC 1 cut(s) 1746
PshBI ATTAAT 2 cut(s) 663, 912
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 2 cut(s) 1701, 1787
PspPI GGNCC 3 cut(s) 964, 995, 1656
PvuII CAGCTG 1 cut(s) 89
RruI TCGCGA 1 cut(s) 945
RsaI GTAC 4 cut(s) 592, 801, 1621, 1787
RsaNI GTAC 4 cut(s) 591, 800, 1620, 1786
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 6 cut(s) 459, 663, 912, 1061, 1109, 1226
SatI GCNGC 2 cut(s) 87, 1074
Sau3AI GATC 2 cut(s) 1634, 1708
Sau96I GGNCC 3 cut(s) 964, 995, 1656
ScrFI CCNGG 3 cut(s) 149, 693, 1624
SduI GDGCHC 1 cut(s) 824
SfaNI GCATC 5 cut(s) 43, 349, 560, 1379, 1538
SinI GGWCC 2 cut(s) 964, 995
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 1175, 1753
SmoI CTYRAG 2 cut(s) 1175, 1753
SsiI CCGC 3 cut(s) 653, 1221, 1627
SspI AATATT 1 cut(s) 1102
SspMI CTAG 3 cut(s) 350, 539, 918
StyD4I CCNGG 3 cut(s) 147, 691, 1622
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 5 cut(s) 253, 265, 414, 790, 1199
TaiI ACGT 1 cut(s) 1254
TaqI TCGA 5 cut(s) 1095, 1298, 1385, 1418, 1577
TatI WGTACW 1 cut(s) 590
TfiI GAWTC 5 cut(s) 395, 812, 872, 1579, 1610
Tru1I TTAA 6 cut(s) 459, 663, 912, 1061, 1109, 1226
Tru9I TTAA 6 cut(s) 459, 663, 912, 1061, 1109, 1226
TscAI CASTG 2 cut(s) 795, 822
TseFI GTSAC 2 cut(s) 1680, 1769
TseI GCWGC 2 cut(s) 86, 1073
Tsp45I GTSAC 2 cut(s) 1680, 1769
TspDTI ATGAA 7 cut(s) 32, 36, 203, 303, 487, 861, 1079
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 2 cut(s) 795, 822
Van91I CCANNNNNTGG 2 cut(s) 199, 566
VpaK11BI GGWCC 2 cut(s) 964, 995
VspI ATTAAT 2 cut(s) 663, 912
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 2 cut(s) 349, 538
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 3 cut(s) 350, 539, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.