MD05G1137700.v1.1

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000754
Physical Location & Seq
Reverse (-)
26732563 .. 26734231
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1137700.v1.1.491

Sequence Viewer

Length: 408 bp
ATGACTAAAAAGCCAGGACATACGCGTTTCTTTTATACGATAGTGCGCTGTTACTTTTTCCTCCTTTTTCAGCTCTTCTCAACGCTTTCAAACAGACCACCGCCACCGCTTGCCCCAAATCCACCGCTTGCTTCTCCACCAGTTCACCCAGACCACCGCCACCACTTCACCCAAATCCGACGAAGGGCGCCACAACAAACGTGCCAATCTTCCTGCACCACCGGTCTCCGCAACCTTTTCCAAAACCCGCTTGACCAAAGGCACGAGGCTAGGAGAGAGTTTTCGTCTGCACCAATAAGTAAAATATTTGATATTTTCACTCTGGAGACTGTGGATACCATCTGTGTAGCCATTATAGGGTTCATAACCCAGCAGAACACATCTAAAACGGGATTCCTTCTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

136

Amino Acids

15.57

Weight (kDa)

10.29

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 87 - 132 4.8e-06 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccII CGCG 1 cut(s) 25
AciI CCGC 6 cut(s) 101, 107, 125, 157, 229, 248
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 184, 357
AflIII ACRYGT 1 cut(s) 23
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 1 cut(s) 90
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 230, 320
AsiGI ACCGGT 1 cut(s) 221
AspLEI GCGC 2 cut(s) 48, 190
AsuHPI GGTGA 2 cut(s) 137, 160
BanI GGYRCC 1 cut(s) 187
BauI CACGAG 1 cut(s) 263
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 15
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 230, 320
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 191
BfuI GTATCC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 357
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 184, 357
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 2 cut(s) 199, 273
Bsh1236I CGCG 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 187
BshTI ACCGGT 1 cut(s) 221
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 184, 357
BsmAI GTCTC 2 cut(s) 230, 320
Bso31I GGTCTC 1 cut(s) 230
BspACI CCGC 6 cut(s) 101, 107, 125, 157, 229, 248
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 111, 129
BstDEI CTNAG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 48, 190
BstMAI GTCTC 2 cut(s) 230, 320
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 111, 129
CfoI GCGC 2 cut(s) 48, 190
Cfr10I RCCGGY 1 cut(s) 221
CspAI ACCGGT 1 cut(s) 221
CviJI RGCY 4 cut(s) 13, 73, 269, 350
CviKI_1 RGCY 4 cut(s) 13, 73, 269, 350
DdeI CTNAG 1 cut(s) 401
DinI GGCGCC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
FaiI YATR 4 cut(s) 21, 36, 356, 365
FauI CCCGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 270
GlaI GCGC 2 cut(s) 47, 189
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 191
HapII CCGG 1 cut(s) 222
HhaI GCGC 2 cut(s) 48, 190
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 2 cut(s) 46, 188
HinP1I GCGC 2 cut(s) 46, 188
HinfI GANTC 1 cut(s) 393
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 137, 160
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 179, 402
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 177, 407
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 216, 290
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 2 cut(s) 46, 188
KasI GGCGCC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 80
LpnPI CCDG 7 cut(s) 27, 153, 162, 226, 235, 308, 383
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 2 cut(s) 67, 201
MluI ACGCGT 1 cut(s) 23
Mly113I GGCGCC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 3 cut(s) 71, 259, 396
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 25
NarI GGCGCC 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 393
PinAI ACCGGT 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 15
SetI ASST 4 cut(s) 75, 203, 237, 407
SfoI GGCGCC 1 cut(s) 189
SsiI CCGC 6 cut(s) 101, 107, 125, 157, 229, 248
SspDI GGCGCC 1 cut(s) 187
SspI AATATT 1 cut(s) 306
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 203
TfiI GAWTC 1 cut(s) 393
TspDTI ATGAA 1 cut(s) 352
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.