Rroxscaffold_6G00414000

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000754
Physical Location & Seq
Reverse (-)
36329350 .. 36334556
5207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414000.1

Sequence Viewer

Length: 2742 bp
ATGGCTTCTCCTCCTTCCTCTACTCAAACCCTCGGCGACATATCTCATTTCAAGCCAACCGTAAGTAACTCTCTCCGATTGGTGGTTGGTCAAATCCGAAGAGAACGACCAAAAAGGAGACTTGCCGTCGCCGGCGTTTCTTCCGCCCCGCAAGAGATTCCCCGGAGAGTGTTTTACTCTGCGCCCATCAGTAAAAAATACGATGTGTTCACTCTAGAGACTACTGATGGAGTGTGCATTATTCTTGATGGGATTATTAACAAGCAGCAGACTATAGCAAATGGGTTTCCTGATGAGGTTGCCAGGCGTTTTCAATTAGGCTTTTATGCAGGCTGGGAAAAAGGTGTTGCAGAGTTCTTGGGAGGAGACTCTAACAGTACTGGTGTTTCTGAAAGAATTTCTGATTTGGGTTCAGAAGGAAAAAAGAATTCCAGTCCAACTTCTGTGCATTTTTCTCAAGAAGAAACTCGAACTCCTTATGAGCATATTGGATCAACTTATTTTCAGTGGATTGGTAGATCAAAGAGTCCGGAAGGCCATCAGAAGAACCCAATGTCCGGATGCTCTATGAAGCATAAAAGTACTAAGATGCTTCCTTCATCAGATGCCTTTGAGAGTGTAGGAGGAGCATCAGGTGCAGCTGTTCAGTCAAGGGGAAATGAACGAATCAGAGAGATGTCCAAGCAATTCTGCACGCAGATATCTGAAACTGTGAACAACTCGCAACAAAATGGTAAATGTGAAGTTGGAGGGAAAGGCGTGAAAAGTTCCAGTCCAACTTCTGTGCATCTTTCTCTAGAGGACGATTCACATGAGCAAGTCTCTTTTGGAGACATGCGTGATGCTGAATTTCCAAAACAGTTGTCTTCGAAGCTGTCCTTGAATAGCTCCATTGATGACTCAAAAATTGATGACTTGGTTAACTATGCCGCTGAGAAGGAAACAGACAGAGAGGATTTTGGATCAACTGGTTTGCAGTGTATTGGGATACCGAAGACTCTAGAAGAAAATGAGAAAGGCCCAGTATCCGGATGCTCGATCAAGCATAATCATACAGAAATTAGTCCTTCAATAGATGTAGGTGTAGTAGCGTCAGGTGTAACCATTCCGTTTGTGGGGGAAATTGATATATCAAATATATATCCGAGAAATTCTGGTGGCAGAGTGTCCGGAGATTTGTCAATAATTACAAGGAGCAAAGGTAAGACGAAGCAAATTGTTGGCAACGGATTGAACTCTGAACAAAATACCATGGACTCTGTACCCGCAGTTGAAACAGTGAGCAATGATTCAACAAATGTGGATTCTGAAGTAGGAGGGAGACATATGTTTGAATCTTTTCTCTCTTATTGTGAAATGGCTGAAGATGTACTAAATTCTAGTCCAACTCCTGTGCATTTTCCTCACGAAACTCCTAATGAGAAGGTCCATTGTGAAGATAGGCTTGATATTGAATATCCAAAACAGATTTCTACAAACCTGTCCTCAAATAGCACCATTGATGACTCAAAAATTGATGATCTGATGAACCATGCTGCTGATGTGGAATTGGACGCGGAGAATATTGGATTAACTGAATTTCAGTCTGTTGGGAGACCACAGGCTCGAGAAGAAAATGAGAAGAATCCAGCATCTGAGCCTGAAGTGGAATTGGATGCGGAGAATATTGGATTAACTGAGTTTCAGTCTGTTGGAAGACCACAGACTCGAGAAGAAAATGAGAAGAATCCAGCATCTGAAGCCCTTGAGATCCTAGATGGAGCAGTCGATGCAAATGCTCAGTCAGGTGGAAAAATGAATATATCAGAGAGATCCCCAAGCAAGTCTGCAGGCAGAGTGTCGCAACTGTTCTCAGGAATTATTAGGAGAAAAGAGAAGAAGAAGCAAACGGTTAGCAATGGATTGAACTCTGAAACAAATACAATAGATTCTGTTCATGCAGTTTCTGGCAGTGTGAGCAACCCGTTACAAAGTGATTGTTTTGAAACAGTAGGGAATGGGACGCCCCGTCCTTCAGATTCTGAACTTCAAGGACCAGTGGATGTGAATGTGGTAAGGAAACTAGATTTTGATTTTGTAGAAGATGATATGGAGCAGACTTCCAATGCAAAAGAGGGACAGGATTTTGGAAATGTTACAGCTCAAGTTGGAGAAGGAGAAAGTGGTGCTAAAGAAGAAAACAAATCCAGGAAGAGAAACATGAGACAAGTAACCGTTGATACACAAGTAAACACAAAGAAAAGAAAGGTATCTCCTTCCACATTGGAGGTGAGCAAGAAAAATAAGTCGAGTCCTTCGACTCTGGAGGTGAATAAGAAAAAAGAGGCATCTCTTTCCACTCCGAAGGTGAACACGAAGACTTCTATTATTTCTCCAGAATCTATGAGTGCCGGACGGTCAAGATCAGGGAGACTGCAGCTACCTCCCTTGGAATTCTGGCGCAATCAGTCGGCAGTTTATGACAAGGATCATGGAGTTATTGGGATTCAGGAAGAGCTACCTAGAGTAACAGCGTCAAGAGTAGATCTGAGCCTCGGAAAAGAAAAGCTAATAGAGATTGATTTCTTTGGCAAATCTCTAGACTTGTTTCTTACCTTGAGGCACATAGCACCACTCTTGAGGGGATGTTCACAGCAGAGGGAGATATGGAATGTATATTTGTATAAGTTTCGCAAAGGAAAGCTGAAGTTTCTTAAAGGAGATTACGAAACAGTCGTCAACCTTCTTTTGTATATTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

913

Amino Acids

99.98

Weight (kDa)

5.58

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 35 - 114 1.9e-16 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1556
AccIII TCCGGA 4 cut(s) 529, 557, 1028, 1169
AciI CCGC 6 cut(s) 144, 149, 930, 1266, 1556, 1658
AclWI GGATC 5 cut(s) 499, 970, 1744, 1806, 2475
AcsI RAATTY 7 cut(s) 396, 427, 848, 1150, 1375, 1577, 2432
AcuI CTGAAG 6 cut(s) 1329, 1383, 1662, 1758, 1998, 2705
AcyI GRCGYC 1 cut(s) 2003
AfaI GTAC 4 cut(s) 379, 583, 1263, 1371
AfiI CCNNNNNNNGG 4 cut(s) 82, 557, 1028, 1115
AhdI GACNNNNNGTC 2 cut(s) 125, 2007
AjnI CCWGG 2 cut(s) 302, 2186
AjuI GAANNNNNNNTTGG 2 cut(s) 1453, 1485
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 8 cut(s) 641, 874, 888, 2141, 2419, 2497, 2548, 2683
AluI AGCT 8 cut(s) 641, 874, 888, 2141, 2419, 2497, 2548, 2683
Alw26I GTCTC 9 cut(s) 112, 212, 360, 825, 826, 1315, 1588, 2197, 2404
AlwI GGATC 5 cut(s) 499, 970, 1744, 1806, 2475
AlwNI CAGNNNCTG 4 cut(s) 1634, 1736, 1946, 2021
Ama87I CYCGRG 2 cut(s) 1605, 1707
Aor13HI TCCGGA 4 cut(s) 529, 557, 1028, 1169
AoxI GGCC 2 cut(s) 535, 1018
ApeKI GCWGC 4 cut(s) 265, 638, 1535, 2416
ApoI RAATTY 7 cut(s) 396, 427, 848, 1150, 1375, 1577, 2432
ArsI GACNNNNNNTTYG 6 cut(s) 848, 880, 1766, 1798, 2700, 2732
Asp700I GAANNNNTTC 1 cut(s) 1338
AspLEI GCGC 2 cut(s) 184, 2442
AspS9I GGNCC 3 cut(s) 1019, 1426, 2033
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 2281, 2320, 2359
AsuII TTCGAA 1 cut(s) 869
AvaI CYCGRG 2 cut(s) 1605, 1707
AvaII GGWCC 2 cut(s) 1426, 2033
BaeI ACNNNNGTAYC 2 cut(s) 2211, 2244
BbsI GAAGAC 4 cut(s) 858, 1001, 1702, 2363
BbvI GCAGC 4 cut(s) 277, 650, 1522, 2428
BccI CCATC 5 cut(s) 194, 221, 242, 546, 1751
BceAI ACGGC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 1757, 1791
BciT130I CCWGG 2 cut(s) 304, 2188
BciVI GTATCC 2 cut(s) 981, 1036
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 9 cut(s) 112, 212, 360, 825, 826, 1315, 1588, 2197, 2404
BfaI CTAG 8 cut(s) 215, 797, 1001, 1380, 1754, 2063, 2502, 2579
BfmI CTRYAG 3 cut(s) 273, 1827, 2414
BfuI GTATCC 2 cut(s) 981, 1036
BglII AGATCT 1 cut(s) 2524
BisI GCNGC 5 cut(s) 266, 639, 930, 1536, 2417
BlsI GCNGC 5 cut(s) 267, 640, 931, 1537, 2418
BmcAI AGTACT 2 cut(s) 379, 583
Bme1390I CCNGG 3 cut(s) 163, 304, 2188
Bme18I GGWCC 2 cut(s) 1426, 2033
BmeRI GACNNNNNGTC 2 cut(s) 125, 2007
BmeT110I CYCGRG 2 cut(s) 1605, 1707
BmgT120I GGNCC 3 cut(s) 1019, 1426, 2033
BmrFI CCNGG 3 cut(s) 163, 304, 2188
BmrI ACTGGG 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 1016
BpiI GAAGAC 4 cut(s) 858, 1001, 1702, 2363
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 2 cut(s) 2324, 2358
Bpu14I TTCGAA 1 cut(s) 869
BpuEI CTTGAG 5 cut(s) 441, 1766, 2127, 2617, 2638
BpuMI CCSGG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 2003
BsaI GGTCTC 1 cut(s) 1588
BsaJI CCNNGG 5 cut(s) 31, 161, 1251, 2427, 2533
BsaWI WCCGGW 4 cut(s) 529, 557, 1028, 1169
BsaXI ACNNNNNCTCC 4 cut(s) 457, 487, 1186, 1216
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 557, 1028, 1115
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 6 cut(s) 385, 432, 771, 973, 1022, 2036
Bse3DI GCAATG 2 cut(s) 1291, 1903
BseAI TCCGGA 4 cut(s) 529, 557, 1028, 1169
BseBI CCWGG 2 cut(s) 304, 2188
BseDI CCNNGG 5 cut(s) 31, 161, 1251, 2427, 2533
BseGI GGATG 5 cut(s) 566, 1037, 1660, 2047, 2630
BseLI CCNNNNNNNGG 4 cut(s) 82, 557, 1028, 1115
BseMI GCAATG 2 cut(s) 1291, 1903
BseMII CTCAG 6 cut(s) 924, 1626, 1668, 1793, 1866, 2519
BseNI ACTGG 6 cut(s) 385, 432, 771, 973, 1022, 2036
BseRI GAGGAG 2 cut(s) 378, 639
BseXI GCAGC 4 cut(s) 277, 650, 1522, 2428
BseYI CCCAGC 1 cut(s) 333
BsgI GTGCAG 2 cut(s) 657, 676
Bsh1236I CGCG 1 cut(s) 1556
BshFI GGCC 2 cut(s) 537, 1020
BsiHKCI CYCGRG 2 cut(s) 1605, 1707
BsiSI CCGG 7 cut(s) 132, 163, 530, 558, 1029, 1170, 2391
BslFI GGGAC 2 cut(s) 2014, 2130
BslI CCNNNNNNNGG 4 cut(s) 82, 557, 1028, 1115
BsmAI GTCTC 9 cut(s) 112, 212, 360, 825, 826, 1315, 1588, 2197, 2404
BsmFI GGGAC 2 cut(s) 2014, 2130
BsnI GGCC 2 cut(s) 537, 1020
Bso31I GGTCTC 1 cut(s) 1588
BsoBI CYCGRG 2 cut(s) 1605, 1707
Bsp119I TTCGAA 1 cut(s) 869
Bsp13I TCCGGA 4 cut(s) 529, 557, 1028, 1169
Bsp19I CCATGG 1 cut(s) 1251
BspACI CCGC 6 cut(s) 144, 149, 930, 1266, 1556, 1658
BspANI GGCC 2 cut(s) 537, 1020
BspCNI CTCAG 6 cut(s) 925, 1627, 1669, 1792, 1865, 2520
BspEI TCCGGA 4 cut(s) 529, 557, 1028, 1169
BspFNI CGCG 1 cut(s) 1556
BspMAI CTGCAG 2 cut(s) 1831, 2418
BspPI GGATC 5 cut(s) 499, 970, 1744, 1806, 2475
BspQI GCTCTTC 1 cut(s) 2487
BspT104I TTCGAA 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 1588
BsrDI GCAATG 2 cut(s) 1291, 1903
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 6 cut(s) 385, 432, 771, 973, 1022, 2036
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 5 cut(s) 31, 161, 1251, 2427, 2533
BssNI GRCGYC 1 cut(s) 2003
BssT1I CCWWGG 2 cut(s) 1251, 2427
Bst2UI CCWGG 2 cut(s) 304, 2188
Bst6I CTCTTC 3 cut(s) 94, 2186, 2487
BstACI GRCGYC 1 cut(s) 2003
BstAPI GCANNNNNTGC 2 cut(s) 635, 1769
BstBI TTCGAA 1 cut(s) 869
BstC8I GCNNGC 4 cut(s) 133, 331, 695, 1831
BstDEI CTNAG 7 cut(s) 585, 933, 1635, 1677, 1779, 1852, 2528
BstDSI CCRYGG 1 cut(s) 1251
BstF5I GGATG 5 cut(s) 566, 1037, 1660, 2047, 2630
BstFNI CGCG 1 cut(s) 1556
BstHHI GCGC 2 cut(s) 184, 2442
BstMAI GTCTC 9 cut(s) 112, 212, 360, 825, 826, 1315, 1588, 2197, 2404
BstMWI GCNNNNNNNGC 4 cut(s) 635, 1739, 1769, 1956
BstNI CCWGG 2 cut(s) 304, 2188
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 3 cut(s) 161, 302, 2186
BstSFI CTRYAG 3 cut(s) 273, 1827, 2414
BstUI CGCG 1 cut(s) 1556
BstV1I GCAGC 4 cut(s) 277, 650, 1522, 2428
BstV2I GAAGAC 4 cut(s) 858, 1001, 1702, 2363
BstX2I RGATCY 3 cut(s) 1749, 1811, 2524
BstYI RGATCY 3 cut(s) 1749, 1811, 2524
BsuI GTATCC 2 cut(s) 981, 1036
BsuRI GGCC 2 cut(s) 537, 1020
BtgI CCRYGG 1 cut(s) 1251
BtsCI GGATG 5 cut(s) 566, 1037, 1660, 2047, 2630
BtsI GCAGTG 2 cut(s) 983, 1957
BtsIMutI CAGTG 5 cut(s) 512, 983, 1284, 1957, 2043
Cac8I GCNNGC 4 cut(s) 133, 331, 695, 1831
CaiI CAGNNNCTG 4 cut(s) 1634, 1736, 1946, 2021
CfoI GCGC 2 cut(s) 184, 2442
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 1019, 1426, 2033
CseI GACGC 4 cut(s) 1080, 1562, 2011, 2502
Csp6I GTAC 4 cut(s) 378, 582, 1262, 1370
CspCI CAANNNNNGTGG 2 cut(s) 1281, 1316
CviAII CATG 7 cut(s) 812, 835, 1252, 1532, 1937, 2200, 2471
CviQI GTAC 4 cut(s) 378, 582, 1262, 1370
DdeI CTNAG 7 cut(s) 585, 933, 1635, 1677, 1779, 1852, 2528
DriI GACNNNNNGTC 2 cut(s) 125, 2007
Eam1104I CTCTTC 3 cut(s) 94, 2186, 2487
Eam1105I GACNNNNNGTC 2 cut(s) 125, 2007
EarI CTCTTC 3 cut(s) 94, 2186, 2487
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 1251, 2427
Eco31I GGTCTC 1 cut(s) 1588
Eco32I GATATC 1 cut(s) 702
Eco47I GGWCC 2 cut(s) 1426, 2033
Eco57I CTGAAG 6 cut(s) 1329, 1383, 1662, 1758, 1998, 2705
Eco88I CYCGRG 2 cut(s) 1605, 1707
EcoRI GAATTC 2 cut(s) 427, 2432
EcoRII CCWGG 2 cut(s) 302, 2186
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 1251, 2427
ErhI CCWWGG 2 cut(s) 1251, 2427
FaeI CATG 7 cut(s) 815, 838, 1255, 1535, 1940, 2203, 2474
FalI AAGNNNNNCTT 4 cut(s) 863, 895, 1428, 1460
FaqI GGGAC 2 cut(s) 2014, 2130
FatI CATG 7 cut(s) 811, 834, 1251, 1531, 1936, 2199, 2470
FauI CCCGC 2 cut(s) 156, 1273
FauNDI CATATG 1 cut(s) 1326
Fnu4HI GCNGC 5 cut(s) 266, 639, 930, 1536, 2417
FokI GGATG 5 cut(s) 573, 1044, 1667, 2054, 2637
Fsp4HI GCNGC 5 cut(s) 266, 639, 930, 1536, 2417
FspBI CTAG 8 cut(s) 215, 797, 1001, 1380, 1754, 2063, 2502, 2579
GlaI GCGC 2 cut(s) 183, 2441
GluI GCNGC 5 cut(s) 266, 639, 930, 1536, 2417
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 2 cut(s) 2324, 2358
HaeIII GGCC 2 cut(s) 537, 1020
HapII CCGG 7 cut(s) 132, 163, 530, 558, 1029, 1170, 2391
HgaI GACGC 4 cut(s) 1080, 1562, 2011, 2502
HhaI GCGC 2 cut(s) 184, 2442
Hin1I GRCGYC 1 cut(s) 2003
Hin1II CATG 7 cut(s) 815, 838, 1255, 1535, 1940, 2203, 2474
Hin6I GCGC 2 cut(s) 182, 2440
HinP1I GCGC 2 cut(s) 182, 2440
HincII GTYRAC 2 cut(s) 922, 2719
HindII GTYRAC 2 cut(s) 922, 2719
HpaI GTTAAC 1 cut(s) 922
HpaII CCGG 7 cut(s) 132, 163, 530, 558, 1029, 1170, 2391
HphI GGTGA 3 cut(s) 2281, 2320, 2359
Hpy166II GTNNAC 7 cut(s) 210, 715, 922, 2230, 2350, 2630, 2719
Hpy8I GTNNAC 7 cut(s) 210, 715, 922, 2230, 2350, 2630, 2719
Hpy99I CGWCG 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 635, 1739, 1769, 1956
HpyF3I CTNAG 7 cut(s) 585, 933, 1635, 1677, 1779, 1852, 2528
Hsp92I GRCGYC 1 cut(s) 2003
Hsp92II CATG 7 cut(s) 815, 838, 1255, 1535, 1940, 2203, 2474
HspAI GCGC 2 cut(s) 182, 2440
Kpn2I TCCGGA 4 cut(s) 529, 557, 1028, 1169
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 922
LguI GCTCTTC 1 cut(s) 2487
LmnI GCTCC 5 cut(s) 626, 893, 1194, 1760, 2092
Lsp1109I GCAGC 4 cut(s) 277, 650, 1522, 2428
MaeI CTAG 8 cut(s) 215, 797, 1001, 1380, 1754, 2063, 2502, 2579
MaeIII GTNAC 6 cut(s) 65, 1099, 1965, 2134, 2209, 2506
MflI RGATCY 3 cut(s) 1749, 1811, 2524
MlyI GAGTC 9 cut(s) 362, 535, 893, 991, 1250, 1499, 1699, 2293, 2299
MmeI TCCRAC 6 cut(s) 461, 727, 800, 1409, 1672, 2128
MreI CGCCGGCG 1 cut(s) 131
MroI TCCGGA 4 cut(s) 529, 557, 1028, 1169
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 1338
MseI TTAA 5 cut(s) 258, 921, 1571, 1673, 2694
MspA1I CMGCKG 2 cut(s) 641, 932
MspI CCGG 7 cut(s) 132, 163, 530, 558, 1029, 1170, 2391
MspR9I CCNGG 3 cut(s) 163, 304, 2188
MvaI CCWGG 2 cut(s) 304, 2188
MvnI CGCG 1 cut(s) 1556
MwoI GCNNNNNNNGC 4 cut(s) 635, 1739, 1769, 1956
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 1251
NdeI CATATG 1 cut(s) 1326
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 7 cut(s) 815, 838, 1255, 1535, 1940, 2203, 2474
NmeAIII GCCGAG 1 cut(s) 12
NspI RCATGY 1 cut(s) 838
NspV TTCGAA 1 cut(s) 869
PaeR7I CTCGAG 2 cut(s) 1605, 1707
PciSI GCTCTTC 1 cut(s) 2487
PcsI WCGNNNNNNNCGW 2 cut(s) 2294, 2712
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 1338
PfoI TCCNGGA 1 cut(s) 2186
PkrI GCNGC 5 cut(s) 267, 640, 931, 1537, 2418
PleI GAGTC 9 cut(s) 362, 534, 893, 991, 1250, 1499, 1699, 2293, 2298
PpsI GAGTC 9 cut(s) 362, 534, 893, 991, 1250, 1499, 1699, 2293, 2298
Psp6I CCWGG 2 cut(s) 302, 2186
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 2 cut(s) 302, 2186
PspPI GGNCC 3 cut(s) 1019, 1426, 2033
PstI CTGCAG 2 cut(s) 1831, 2418
PstNI CAGNNNCTG 4 cut(s) 1634, 1736, 1946, 2021
PsuI RGATCY 3 cut(s) 1749, 1811, 2524
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 4 cut(s) 379, 583, 1263, 1371
RsaNI GTAC 4 cut(s) 378, 582, 1262, 1370
SapI GCTCTTC 1 cut(s) 2487
SaqAI TTAA 5 cut(s) 258, 921, 1571, 1673, 2694
SatI GCNGC 5 cut(s) 266, 639, 930, 1536, 2417
Sau96I GGNCC 3 cut(s) 1019, 1426, 2033
ScaI AGTACT 2 cut(s) 379, 583
SchI GAGTC 9 cut(s) 362, 535, 893, 991, 1250, 1499, 1699, 2293, 2299
ScrFI CCNGG 3 cut(s) 163, 304, 2188
SfcI CTRYAG 3 cut(s) 273, 1827, 2414
Sfr274I CTCGAG 2 cut(s) 1605, 1707
SfuI TTCGAA 1 cut(s) 869
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 2 cut(s) 1426, 2033
SlaI CTCGAG 2 cut(s) 1605, 1707
SmlI CTYRAG 7 cut(s) 456, 1605, 1707, 1745, 2142, 2596, 2617
SmoI CTYRAG 7 cut(s) 456, 1605, 1707, 1745, 2142, 2596, 2617
SsiI CCGC 6 cut(s) 144, 149, 930, 1266, 1556, 1658
SspI AATATT 2 cut(s) 1564, 1666
SspMI CTAG 8 cut(s) 215, 797, 1001, 1380, 1754, 2063, 2502, 2579
StyD4I CCNGG 3 cut(s) 161, 302, 2186
StyI CCWWGG 2 cut(s) 1251, 2427
TaqI TCGA 8 cut(s) 469, 869, 1037, 1606, 1708, 1767, 2288, 2297
TatI WGTACW 3 cut(s) 377, 581, 1369
TauI GCSGC 1 cut(s) 932
Tru1I TTAA 5 cut(s) 258, 921, 1571, 1673, 2694
Tru9I TTAA 5 cut(s) 258, 921, 1571, 1673, 2694
TscAI CASTG 5 cut(s) 512, 983, 1284, 1957, 2043
TseI GCWGC 4 cut(s) 265, 638, 1535, 2416
TspDTI ATGAA 6 cut(s) 584, 588, 675, 1541, 1811, 1925
TspGWI ACGGA 2 cut(s) 1098, 1242
TspRI CASTG 5 cut(s) 512, 983, 1284, 1957, 2043
VpaK11BI GGWCC 2 cut(s) 1426, 2033
XapI RAATTY 7 cut(s) 396, 427, 848, 1150, 1375, 1577, 2432
XbaI TCTAGA 4 cut(s) 214, 796, 1000, 2578
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XhoI CTCGAG 2 cut(s) 1605, 1707
XmnI GAANNNNTTC 1 cut(s) 1338
XspI CTAG 8 cut(s) 215, 797, 1001, 1380, 1754, 2063, 2502, 2579
ZrmI AGTACT 2 cut(s) 379, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.