Prupe.6G252000_v2.0.a1

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000754
Physical Location & Seq
Reverse (-)
24647474 .. 24651632
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G252000.5

Sequence Viewer

Length: 1464 bp
ATGGTTTCTACTCCGAGCACGAACCAGACCATCCATGGCGATGACAATACCGACGTCTCCTACTTTCAGAAAACAGTATGTTTGAACGATTGGTGGCTGATTAAAGCCGAAAACGAGGTCCAAGGAAAGTGGCTAGCCGTCGCCGGTGTATCTTCTAGAAATGAAGGTGCCAGGCGAGTGTTCTCCTCTGCACCAATAGCCAAAAGATTCGATGTTTTCACTCTCGAGACGGTGGATGGCATATGTGTAGCCATCAAAGGGTTCATAAACAAGCAGAAGACTACTGAAAATGGGTTTCCATCTGAGGTTTTCAGTCATTTTCTGTTTGGCTTTCCTTCTTACTGGGAACAATGGGTTGCAAAGTTCTTTGGTGGAGACTCTACCACTACTTGTGCGGTTTCTGGAAGTATTTCTGATTCAGACAAGTTAGCTACTCAGCCAGGAAGCATAAAAAGTTCTATTCCATCTTCCTTGCATTTTGATCAAGAAGAAACTCCAGTTGAGCAGGTCTCTTGTGAAGATAGGCATGATGTTGAAGTCCCAAAACAGTTTTCTTCTGAGCTGCCTACGAATGTCGCTGTTGATGACTTCCCTAAACATGCTGCTGAGGAGGAAACAGACAGAGCAAGTATTGGAGCAAGTGATTTTCAGTGTATTGGTAAACCAATGCATCTGGTAAGCAATCAGAAGAAACCGGTATCCAGATGCTTTATGAAGCATAAAAGTACAAATTCTTGTCCTGCATCAGAGGCCTCTGAGAGCCTTGGTGGAGTATCAGGTGCAACTACTCAGTCTGGGGGGAAAGTGGACATATCAGAGGAATATGCAAGCTATTCTGCAGGCAGAGTGACCAGAAGTTTGTCAAGAAATTTAAGTAGAAAAGGGAAAAAGAAGAAAATGGTGGGATGTGGCTTGAACTCTGAGAAAAATACTGTGGATTCTGTTCCAGCGGTGTTCAAAACTTTGAGCAAAAGTTTACAAAATGATAATTGTAAAGTAGGAGGGAAAAGTATGTCCCATCCTTCAGATTTTGAGTTTCAAGAACCAAATGATTTGAAAGTAATAAAAAAACTTGATTTTGGGTGTCTAGAAGATGATTTGCAGCATACTCACAATGCAAAACAGGGACAGAATTGTGGAAATATTACAACTCAAGTTGGAGGAGAAAGTGATGCTAAAGAAGAAAACACATTCAGGAAAAGAACTAAGACAAACACTACCTTTTATACAAAGGAAAATCCCACTCTGGAGGTGAACAAGAAAGTGTCTATTGCTACTCCTGAATCTTTGAATATGAGACGGTCCAGAAGCGGGAGACTACTTCTACCGACCATGGAATTCTGGCGCAATCAATTGGCAATCTACGACTCGGATCGTAAGGTTACTGGAATTCAGGGAGGCCTACCTGTAGTAACAACATCAAGAGGCATTTGCTCTGGGTCTCAGAAACGCAACAGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

488

Amino Acids

53.6

Weight (kDa)

8.47

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 3 cut(s) 395, 950, 1311
AclWI GGATC 1 cut(s) 1380
AcsI RAATTY 4 cut(s) 730, 868, 1337, 1389
AcuI CTGAAG 1 cut(s) 1008
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 727
AfiI CCNNNNNNNGG 2 cut(s) 258, 1311
AgeI ACCGGT 1 cut(s) 694
AgsI TTSAA 7 cut(s) 85, 536, 916, 958, 1040, 1057, 1291
AjnI CCWGG 2 cut(s) 170, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AluBI AGCT 3 cut(s) 431, 562, 831
AluI AGCT 3 cut(s) 431, 562, 831
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 7 cut(s) 61, 221, 369, 514, 1291, 1309, 1446
AlwI GGATC 1 cut(s) 1380
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 2 cut(s) 750, 1399
ApeKI GCWGC 3 cut(s) 562, 602, 1102
ApoI RAATTY 4 cut(s) 730, 868, 1337, 1389
ArsI GACNNNNNNTTYG 4 cut(s) 102, 134, 841, 873
AsiGI ACCGGT 1 cut(s) 694
Asp700I GAANNNNTTC 1 cut(s) 409
AspLEI GCGC 1 cut(s) 1347
AspS9I GGNCC 2 cut(s) 118, 1302
AsuHPI GGTGA 1 cut(s) 1264
AsuNHI GCTAGC 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 118, 1302
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 549, 589, 1114
BccI CCATC 6 cut(s) 38, 230, 260, 307, 472, 1026
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 172, 441
BciVI GTATCC 1 cut(s) 709
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 7 cut(s) 61, 221, 369, 514, 1291, 1309, 1446
BfaI CTAG 3 cut(s) 134, 156, 1088
BfmI CTRYAG 2 cut(s) 837, 1407
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 709
BisI GCNGC 3 cut(s) 563, 603, 1103
BlsI GCNGC 3 cut(s) 564, 604, 1104
Bme1390I CCNGG 2 cut(s) 172, 441
Bme18I GGWCC 2 cut(s) 118, 1302
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 118, 1302
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 172, 441
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 679, 695, 752, 1162
BmtI GCTAGC 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpmI CTGGAG 2 cut(s) 480, 1268
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 2 cut(s) 514, 1446
BsaJI CCNNGG 4 cut(s) 34, 121, 763, 1332
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 1311
Bse118I RCCGGY 2 cut(s) 143, 694
Bse1I ACTGG 3 cut(s) 347, 497, 1390
BseBI CCWGG 2 cut(s) 172, 441
BseDI CCNNGG 4 cut(s) 34, 121, 763, 1332
BseGI GGATG 4 cut(s) 30, 241, 911, 1018
BseLI CCNNNNNNNGG 2 cut(s) 258, 1311
BseMII CTCAG 8 cut(s) 294, 449, 549, 597, 747, 803, 912, 1457
BseNI ACTGG 3 cut(s) 347, 497, 1390
BseRI GAGGAG 3 cut(s) 175, 623, 1176
BseXI GCAGC 3 cut(s) 549, 589, 1114
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 752, 1401
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 694
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 144, 695
BslFI GGGAC 3 cut(s) 524, 1000, 1140
BslI CCNNNNNNNGG 2 cut(s) 258, 1311
BsmAI GTCTC 7 cut(s) 61, 221, 369, 514, 1291, 1309, 1446
BsmBI CGTCTC 3 cut(s) 61, 221, 1291
BsmFI GGGAC 3 cut(s) 524, 1000, 1140
BsnI GGCC 2 cut(s) 752, 1401
Bso31I GGTCTC 2 cut(s) 514, 1446
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 481, 1372
Bsp19I CCATGG 2 cut(s) 34, 1332
BspACI CCGC 3 cut(s) 395, 950, 1311
BspANI GGCC 2 cut(s) 752, 1401
BspCNI CTCAG 8 cut(s) 295, 448, 550, 598, 748, 802, 913, 1456
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 496
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 1380
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 514, 1446
BsrFI RCCGGY 2 cut(s) 143, 694
BsrI ACTGG 3 cut(s) 347, 497, 1390
BssAI RCCGGY 2 cut(s) 143, 694
BssECI CCNNGG 4 cut(s) 34, 121, 763, 1332
BssMI GATC 2 cut(s) 481, 1372
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 4 cut(s) 34, 121, 763, 1332
Bst2UI CCWGG 2 cut(s) 172, 441
Bst4CI ACNGT 5 cut(s) 76, 232, 549, 934, 1302
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 135, 829, 841
BstDEI CTNAG 9 cut(s) 303, 435, 558, 606, 756, 789, 921, 1206, 1443
BstDSI CCRYGG 2 cut(s) 34, 1332
BstF5I GGATG 4 cut(s) 30, 241, 911, 1018
BstHHI GCGC 1 cut(s) 1347
BstKTI GATC 2 cut(s) 484, 1375
BstMAI GTCTC 7 cut(s) 61, 221, 369, 514, 1291, 1309, 1446
BstMBI GATC 2 cut(s) 481, 1372
BstMWI GCNNNNNNNGC 2 cut(s) 197, 749
BstNI CCWGG 2 cut(s) 172, 441
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 170, 439
BstSFI CTRYAG 2 cut(s) 837, 1407
BstV1I GCAGC 3 cut(s) 549, 589, 1114
BstV2I GAAGAC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 2 cut(s) 752, 1401
BtgI CCRYGG 2 cut(s) 34, 1332
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 4 cut(s) 30, 241, 911, 1018
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 3 cut(s) 135, 829, 841
CfoI GCGC 1 cut(s) 1347
Cfr10I RCCGGY 2 cut(s) 143, 694
Cfr13I GGNCC 2 cut(s) 118, 1302
Csp6I GTAC 1 cut(s) 726
CspAI ACCGGT 1 cut(s) 694
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviAII CATG 4 cut(s) 35, 527, 599, 1333
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 9 cut(s) 303, 435, 558, 606, 756, 789, 921, 1206, 1443
DpnI GATC 2 cut(s) 483, 1374
DpnII GATC 2 cut(s) 481, 1372
Eco130I CCWWGG 4 cut(s) 34, 121, 763, 1332
Eco147I AGGCCT 2 cut(s) 752, 1401
Eco31I GGTCTC 2 cut(s) 514, 1446
Eco47I GGWCC 2 cut(s) 118, 1302
Eco57I CTGAAG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 224
EcoRI GAATTC 2 cut(s) 1337, 1389
EcoRII CCWGG 2 cut(s) 170, 439
EcoT14I CCWWGG 4 cut(s) 34, 121, 763, 1332
EcoT22I ATGCAT 1 cut(s) 672
ErhI CCWWGG 4 cut(s) 34, 121, 763, 1332
Esp3I CGTCTC 3 cut(s) 61, 221, 1291
FaeI CATG 4 cut(s) 38, 530, 602, 1336
FaqI GGGAC 3 cut(s) 524, 1000, 1140
FatI CATG 4 cut(s) 34, 526, 598, 1332
FauI CCCGC 1 cut(s) 1304
FauNDI CATATG 1 cut(s) 242
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 563, 603, 1103
FokI GGATG 4 cut(s) 17, 248, 918, 1005
Fsp4HI GCNGC 3 cut(s) 563, 603, 1103
FspBI CTAG 3 cut(s) 134, 156, 1088
GlaI GCGC 1 cut(s) 1346
GluI GCNGC 3 cut(s) 563, 603, 1103
GsuI CTGGAG 2 cut(s) 480, 1268
HaeIII GGCC 2 cut(s) 752, 1401
HapII CCGG 2 cut(s) 144, 695
HhaI GCGC 1 cut(s) 1347
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 4 cut(s) 38, 530, 602, 1336
Hin6I GCGC 1 cut(s) 1345
HinP1I GCGC 1 cut(s) 1345
HinfI GANTC 6 cut(s) 207, 377, 416, 938, 1283, 1367
HpaII CCGG 2 cut(s) 144, 695
HphI GGTGA 1 cut(s) 1264
Hpy166II GTNNAC 4 cut(s) 662, 808, 977, 1255
Hpy8I GTNNAC 4 cut(s) 662, 808, 977, 1255
Hpy99I CGWCG 2 cut(s) 56, 143
HpyAV CCTTC 3 cut(s) 158, 345, 1032
HpyCH4III ACNGT 5 cut(s) 76, 232, 549, 934, 1302
HpyCH4IV ACGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 749
HpyF3I CTNAG 9 cut(s) 303, 435, 558, 606, 756, 789, 921, 1206, 1443
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 4 cut(s) 38, 530, 602, 1336
HspAI GCGC 1 cut(s) 1345
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 481, 1372
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 3 cut(s) 549, 589, 1114
LweI GCATC 4 cut(s) 679, 695, 752, 1162
MaeI CTAG 3 cut(s) 134, 156, 1088
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 847, 1381, 1411
MalI GATC 2 cut(s) 483, 1374
MboI GATC 2 cut(s) 481, 1372
MfeI CAATTG 1 cut(s) 1352
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 7 cut(s) 730, 868, 988, 1132, 1337, 1352, 1389
MlyI GAGTC 2 cut(s) 371, 1361
MmeI TCCRAC 1 cut(s) 1138
Mph1103I ATGCAT 1 cut(s) 672
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 2 cut(s) 102, 872
MslI CAYNNNNRTG 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 2 cut(s) 144, 695
MspR9I CCNGG 2 cut(s) 172, 441
MunI CAATTG 1 cut(s) 1352
MvaI CCWGG 2 cut(s) 172, 441
MwoI GCNNNNNNNGC 2 cut(s) 197, 749
NcoI CCATGG 2 cut(s) 34, 1332
NdeI CATATG 1 cut(s) 242
NdeII GATC 2 cut(s) 481, 1372
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 4 cut(s) 38, 530, 602, 1336
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 847
NsiI ATGCAT 1 cut(s) 672
NspI RCATGY 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 224
PceI AGGCCT 2 cut(s) 752, 1401
PcsI WCGNNNNNNNCGW 1 cut(s) 1456
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 207, 416, 938, 1283
PinAI ACCGGT 1 cut(s) 694
PkrI GCNGC 3 cut(s) 564, 604, 1104
PleI GAGTC 2 cut(s) 371, 1361
PpsI GAGTC 2 cut(s) 371, 1361
Psp6I CCWGG 2 cut(s) 170, 439
PspGI CCWGG 2 cut(s) 170, 439
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 118, 1302
PstI CTGCAG 1 cut(s) 841
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 102, 872
SatI GCNGC 3 cut(s) 563, 603, 1103
Sau3AI GATC 2 cut(s) 481, 1372
Sau96I GGNCC 2 cut(s) 118, 1302
SchI GAGTC 2 cut(s) 371, 1361
ScrFI CCNGG 2 cut(s) 172, 441
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 4 cut(s) 679, 695, 752, 1162
SfcI CTRYAG 2 cut(s) 837, 1407
Sfr274I CTCGAG 1 cut(s) 224
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 2 cut(s) 118, 1302
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 224, 1152
SmoI CTYRAG 2 cut(s) 224, 1152
Sse9I AATT 7 cut(s) 730, 868, 988, 1132, 1337, 1352, 1389
SseBI AGGCCT 2 cut(s) 752, 1401
SsiI CCGC 3 cut(s) 395, 950, 1311
SspI AATATT 1 cut(s) 1144
SspMI CTAG 3 cut(s) 134, 156, 1088
StuI AGGCCT 2 cut(s) 752, 1401
StyD4I CCNGG 2 cut(s) 170, 439
StyI CCWWGG 4 cut(s) 34, 121, 763, 1332
TaaI ACNGT 5 cut(s) 76, 232, 549, 934, 1302
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 210, 225
TasI AATT 7 cut(s) 730, 868, 988, 1132, 1337, 1352, 1389
TatI WGTACW 1 cut(s) 725
TfiI GAWTC 4 cut(s) 207, 416, 938, 1283
Tru1I TTAA 2 cut(s) 102, 872
Tru9I TTAA 2 cut(s) 102, 872
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 3 cut(s) 562, 602, 1102
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 3 cut(s) 177, 253, 728
TspRI CASTG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 118, 1302
XapI RAATTY 4 cut(s) 730, 868, 1337, 1389
XbaI TCTAGA 2 cut(s) 155, 1087
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 409
XspI CTAG 3 cut(s) 134, 156, 1088
ZraI GACGTC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.