Rorug03G0084900

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000754
Physical Location & Seq
Reverse (-)
6585806 .. 6586651
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0084900.1

Sequence Viewer

Length: 711 bp
ATGAAAACGCCAGCAGCAGTCTGTCTTATTTTCTTGCTTTCTGCTATTCTGCTCAAGGGTTCCCACGCAGAGCCATACGAGTATCTACAATTTGTTTTGCAATACTCCAAAGGCTACTGCTTCAACACCCAGATATGTTTTGCGACGTTGCCAAAAATGTTTACCATACACGGTGTCTGGCCCACGAACATTTCCAATCCCCTGGTGAAATGTAAACAGTCAAAGAAACTACACCCGTTCAAGCAAAACGTGATGACAACATCACTGCAAAACGATCTTGGCCAATCTTGGCCCAATGTCGAAAGAGCTAAAACCAATATAGGGTTTTGGAAAGAGGAATACGAAAAGCATGGGTCTTGTACTGCACCAGCTATCACACAGAAAGCGTACTTTGAGAGAGCTCACGAGCTGTGGAAGGAGTATGATCTCTATACAATTTTGGATAAAAAGCAGATCAAGCCGGGGCACTCATATGCACTCACTGATTTTGAAGCAGCCGTCAAGTCCAAGATCGGTACCGATACAATACCTCTCATCCTGTGCAAAGAGGTCACACTAACTACTGGGAGCATCACAACTGGATTAATTCTGAGGGAAATTGTTATCTGTTTCGATCACCAGGGAACAAATCTGGTCAATTGTACCCGGCTGACAGATTGCAAACGGCAGAAGAGCACAACTAAAGACGACATGATATACTACGTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

236

Amino Acids

26.9

Weight (kDa)

8.85

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 26 - 214 2.9e-36 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 280
AfaI GTAC 5 cut(s) 361, 389, 517, 643, 705
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 3 cut(s) 124, 241, 491
AjnI CCWGG 2 cut(s) 201, 618
AluBI AGCT 4 cut(s) 308, 371, 401, 409
AluI AGCT 4 cut(s) 308, 371, 401, 409
Alw21I GWGCWC 2 cut(s) 403, 677
AoxI GGCC 3 cut(s) 179, 280, 290
ApeKI GCWGC 2 cut(s) 14, 494
AseI ATTAAT 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 515
AspS9I GGNCC 2 cut(s) 180, 291
AsuC2I CCSGG 2 cut(s) 462, 646
AsuHPI GGTGA 2 cut(s) 217, 608
BaeGI GKGCMC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 403
BauI CACGAG 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 403, 677
BbvI GCAGC 2 cut(s) 26, 506
BceAI ACGGC 2 cut(s) 482, 680
BciT130I CCWGG 2 cut(s) 203, 620
BcnI CCSGG 2 cut(s) 462, 646
BisI GCNGC 2 cut(s) 15, 495
BlsI GCNGC 2 cut(s) 16, 496
Bme1390I CCNGG 4 cut(s) 203, 462, 620, 646
BmgT120I GGNCC 2 cut(s) 180, 291
BmiI GGNNCC 2 cut(s) 61, 517
BmrFI CCNGG 4 cut(s) 203, 462, 620, 646
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 579
BmuI ACTGGG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 462, 646
BsaAI YACGTR 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 201, 461, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse1I ACTGG 2 cut(s) 568, 583
BseBI CCWGG 2 cut(s) 203, 620
BseDI CCNNGG 3 cut(s) 201, 461, 619
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 568, 583
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 26, 506
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 3 cut(s) 181, 282, 292
BshNI GGYRCC 1 cut(s) 515
BsiHKAI GWGCWC 2 cut(s) 403, 677
BsiSI CCGG 2 cut(s) 461, 646
BslI CCNNNNNNNGG 1 cut(s) 321
BsnI GGCC 3 cut(s) 181, 282, 292
Bsp1286I GDGCHC 3 cut(s) 403, 468, 677
Bsp143I GATC 5 cut(s) 274, 424, 453, 510, 613
BspANI GGCC 3 cut(s) 181, 282, 292
BspCNI CTCAG 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 61, 517
BspQI GCTCTTC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 515
BsrI ACTGG 2 cut(s) 568, 583
BssECI CCNNGG 3 cut(s) 201, 461, 619
BssMI GATC 5 cut(s) 274, 424, 453, 510, 613
BssSI CACGAG 1 cut(s) 404
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 203, 620
Bst4CI ACNGT 2 cut(s) 173, 219
Bst6I CTCTTC 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 703
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 5 cut(s) 277, 427, 456, 513, 616
BstMBI GATC 5 cut(s) 274, 424, 453, 510, 613
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 2 cut(s) 203, 620
BstSCI CCNGG 4 cut(s) 201, 460, 618, 644
BstSLI GKGCMC 1 cut(s) 468
BstSNI TACGTA 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 26, 506
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 3 cut(s) 181, 282, 292
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 263, 480
Cac8I GCNNGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 180, 291
Csp6I GTAC 5 cut(s) 360, 388, 516, 642, 704
CviAII CATG 2 cut(s) 350, 691
CviQI GTAC 5 cut(s) 360, 388, 516, 642, 704
DdeI CTNAG 1 cut(s) 590
DpnI GATC 5 cut(s) 276, 426, 455, 512, 615
DpnII GATC 5 cut(s) 274, 424, 453, 510, 613
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 401
Eco105I TACGTA 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 201, 618
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 2 cut(s) 353, 694
FatI CATG 2 cut(s) 349, 690
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 15, 495
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 2 cut(s) 15, 495
GluI GCNGC 2 cut(s) 15, 495
HaeIII GGCC 3 cut(s) 181, 282, 292
HapII CCGG 2 cut(s) 461, 646
Hin1II CATG 2 cut(s) 353, 694
HpaII CCGG 2 cut(s) 461, 646
HphI GGTGA 2 cut(s) 217, 608
Hpy166II GTNNAC 2 cut(s) 162, 215
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 2 cut(s) 162, 215
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 2 cut(s) 173, 219
HpyCH4IV ACGT 3 cut(s) 146, 249, 702
HpyCH4V TGCA 6 cut(s) 100, 268, 365, 476, 543, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 3 cut(s) 146, 249, 702
Hsp92II CATG 2 cut(s) 353, 694
KpnI GGTACC 1 cut(s) 519
Kzo9I GATC 5 cut(s) 274, 424, 453, 510, 613
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 1 cut(s) 567
Lsp1109I GCAGC 2 cut(s) 26, 506
LweI GCATC 1 cut(s) 579
MaeII ACGT 3 cut(s) 146, 249, 702
MaeIII GTNAC 1 cut(s) 550
MalI GATC 5 cut(s) 276, 426, 455, 512, 615
MboI GATC 5 cut(s) 274, 424, 453, 510, 613
MboII GAAGA 1 cut(s) 682
MfeI CAATTG 1 cut(s) 637
MhlI GDGCHC 3 cut(s) 403, 468, 677
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 5 cut(s) 89, 435, 585, 597, 637
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 4 cut(s) 328, 540, 541, 585
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 584, 709
MslI CAYNNNNRTG 1 cut(s) 471
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 2 cut(s) 461, 646
MspR9I CCNGG 4 cut(s) 203, 462, 620, 646
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 2 cut(s) 203, 620
MwoI GCNNNNNNNGC 1 cut(s) 457
NciI CCSGG 2 cut(s) 462, 646
NdeI CATATG 1 cut(s) 472
NdeII GATC 5 cut(s) 274, 424, 453, 510, 613
NlaIII CATG 2 cut(s) 353, 694
NlaIV GGNNCC 2 cut(s) 61, 517
NmuCI GTSAC 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 665
PkrI GCNGC 2 cut(s) 16, 496
Ppu21I YACGTR 1 cut(s) 703
PshBI ATTAAT 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 201, 618
PspGI CCWGG 2 cut(s) 201, 618
PspN4I GGNNCC 2 cut(s) 61, 517
PspPI GGNCC 2 cut(s) 180, 291
RsaI GTAC 5 cut(s) 361, 389, 517, 643, 705
RsaNI GTAC 5 cut(s) 360, 388, 516, 642, 704
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 584, 709
SatI GCNGC 2 cut(s) 15, 495
Sau3AI GATC 5 cut(s) 274, 424, 453, 510, 613
Sau96I GGNCC 2 cut(s) 180, 291
ScrFI CCNGG 4 cut(s) 203, 462, 620, 646
SduI GDGCHC 3 cut(s) 403, 468, 677
SfaNI GCATC 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 703
Sse9I AATT 5 cut(s) 89, 435, 585, 597, 637
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 4 cut(s) 201, 460, 618, 644
TaaI ACNGT 2 cut(s) 173, 219
TaiI ACGT 3 cut(s) 149, 252, 705
TaqI TCGA 2 cut(s) 300, 612
TasI AATT 5 cut(s) 89, 435, 585, 597, 637
TatI WGTACW 1 cut(s) 359
Tru1I TTAA 2 cut(s) 584, 709
Tru9I TTAA 2 cut(s) 584, 709
TscAI CASTG 2 cut(s) 270, 487
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 14, 494
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 270, 487
VspI ATTAAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.