Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007845

Physical Location & Seq

Genomic Coordinates Reverse (-)

21747760 .. 21750528

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28270.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGCTCTGGAGGGGTTTGCTCCTGTCTCTTCCACTAGAATTGATTGGAAACCCAGAAAGAGATCAGAGTGGTAACTTGTTTCTAACAGCTGGCGGGAGGACTATAGAGAAGGTAACAGAGGACACTGCTAACAATGCTCCCAACAAACAGGAAGAGCACACCGAGCCCGATGAGGATATGCTTCAGGACTCAACTGCAGCTCCTGAGCTGTCAGAGCGTCGAAAGGCTCTGTTTGAACCCTTAGAACCTACGATGAATAGCAATGGGAAACGGCCATCAGCTGAGTCCTTACTTCCTCCTCCTGACTTTGATTCCTCGAGCTATCCCAAAGGGTGGCTGATTGGAAAAAAGCGAAAGCTGGTTAATGTTGATGTGGTTGAGAAAATGAGGCGGATTGCCATTCAGGAAATGAACAGAAAGGATAGGGAAATTGATGGGCTAAACGAGCAATTGGAGGAGGATGTAAGGTGCCTAGAACACTTGCAACTGCAGCTCCTGCAAGAACGAAGCAAACGTGGAGAAGTAGAAAGAGAGAATGCAATGCTGCAAGACCAGGTTACCATGCTTATGGACATGTTGCAGGAAGATGGCAATGTGGGTGATGACGAAGGCCCTGCTGAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.75

Weight (kDa)

4.56

Isoelectric Point (pI)

68.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80940 AT1G80940 AT1G80940 AT1G80940
fragaria_vesca	FvH4_6g28270 FvH4_6g28270
malus_domestica	MD09G1227600.v1.1 MD17G1226400.v1.1
prunus_persica	Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1
pyrus_communis	pycom09g14700 pycom17g22980
rosa_chinensis	RchiOBHm_Chr2g0132311
rosa_laevigata	RLG00000019245
rosa_multiflora	Rmu_sc0002795.1_g000008
rosa_roxburghii	Rroxscaffold_2G00112170
rosa_rugosa	Rorug02G0303500 Rorug02G0303600
rosa_samantha	Rh2AG356600 Rh2BG363100 Rh2CG340100 Rh2DG379900
rosa_wichuraiana	Rw2G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	336
AciI	CCGC	2 cut(s)	96, 394
AcoI	YGGCCR	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	8 cut(s)	7, 92, 203, 211, 284, 324, 361, 496
AluI	AGCT	8 cut(s)	7, 92, 203, 211, 284, 324, 361, 496
Alw21I	GWGCWC	2 cut(s)	9, 162
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	2 cut(s)	206, 499
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	2 cut(s)	275, 613
ApeKI	GCWGC	3 cut(s)	200, 493, 547
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	471
BanII	GRGCYC	2 cut(s)	9, 171
Bbv12I	GWGCWC	2 cut(s)	9, 162
BbvI	GCAGC	3 cut(s)	212, 505, 534
BccI	CCATC	3 cut(s)	286, 431, 584
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	38, 476
BfmI	CTRYAG	3 cut(s)	105, 198, 491
BisI	GCNGC	3 cut(s)	201, 494, 548
BlsI	GCNGC	3 cut(s)	202, 495, 549
Bme1390I	CCNGG	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse3DI	GCAATG	3 cut(s)	271, 549, 601
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	3 cut(s)	271, 549, 601
BseMII	CTCAG	2 cut(s)	198, 276
BseRI	GAGGAG	2 cut(s)	291, 473
BseXI	GCAGC	3 cut(s)	212, 505, 534
BshFI	GGCC	2 cut(s)	277, 615
BshNI	GGYRCC	1 cut(s)	471
BsiHKAI	GWGCWC	2 cut(s)	9, 162
BsiHKCI	CYCGRG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	277, 615
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	9, 162, 171
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	96, 394
BspANI	GGCC	2 cut(s)	277, 615
BspCNI	CTCAG	2 cut(s)	199, 277
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	2 cut(s)	202, 495
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	471
BsrDI	GCAATG	3 cut(s)	271, 549, 601
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	36, 150
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	207, 244, 285
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 166, 217, 448, 493, 499
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	580
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	3 cut(s)	105, 198, 491
BstV1I	GCAGC	3 cut(s)	212, 505, 534
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	277, 615
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	2 cut(s)	206, 499
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	555
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	2 cut(s)	565, 577
DdeI	CTNAG	3 cut(s)	207, 244, 285
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	36, 150
EarI	CTCTTC	2 cut(s)	36, 150
EciI	GGCGGA	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	2 cut(s)	9, 171
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	555
EcoT38I	GRGCYC	2 cut(s)	9, 171
FaeI	CATG	2 cut(s)	568, 580
FaiI	YATR	5 cut(s)	107, 182, 566, 572, 578
FatI	CATG	2 cut(s)	564, 576
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	201, 494, 548
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	2 cut(s)	9, 171
Fsp4HI	GCNGC	3 cut(s)	201, 494, 548
FspBI	CTAG	2 cut(s)	38, 476
GluI	GCNGC	3 cut(s)	201, 494, 548
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	277, 615
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	568, 580
HinfI	GANTC	3 cut(s)	191, 287, 314
HphI	GGTGA	1 cut(s)	614
Hpy188I	TCNGA	2 cut(s)	69, 217
Hpy188III	TCNNGA	5 cut(s)	10, 188, 206, 305, 407
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	106, 605
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	7 cut(s)	200, 487, 493, 502, 542, 550, 583
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 166, 217, 448, 493, 499
HpyF3I	CTNAG	3 cut(s)	207, 244, 285
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	568, 580
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	5 cut(s)	4, 27, 145, 208, 501
Lsp1109I	GCAGC	3 cut(s)	212, 505, 534
MabI	ACCWGGT	1 cut(s)	555
MaeI	CTAG	2 cut(s)	38, 476
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	3 cut(s)	74, 115, 559
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	23, 167, 599
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	3 cut(s)	9, 162, 171
MluCI	AATT	3 cut(s)	41, 432, 452
MlyI	GAGTC	2 cut(s)	185, 296
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	2 cut(s)	92, 284
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	6 cut(s)	137, 166, 217, 448, 493, 499
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	568, 580
NlaIV	GGNNCC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	580
PaeR7I	CTCGAG	1 cut(s)	319
PciI	ACATGT	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	202, 495, 549
PleI	GAGTC	2 cut(s)	185, 295
PpsI	GAGTC	2 cut(s)	185, 295
PscI	ACATGT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	555
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	614
PspXI	VCTCGAGB	1 cut(s)	319
PstI	CTGCAG	2 cut(s)	202, 495
PstNI	CAGNNNCTG	2 cut(s)	206, 499
PvuII	CAGCTG	2 cut(s)	92, 284
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	201, 494, 548
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	2 cut(s)	185, 296
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	3 cut(s)	9, 162, 171
SexAI	ACCWGGT	1 cut(s)	555
SfcI	CTRYAG	3 cut(s)	105, 198, 491
Sfr274I	CTCGAG	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	3 cut(s)	41, 432, 452
SsiI	CCGC	2 cut(s)	96, 394
SspMI	CTAG	2 cut(s)	38, 476
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	555
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	223, 320
TasI	AATT	3 cut(s)	41, 432, 452
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	200, 493, 547
TspDTI	ATGAA	2 cut(s)	272, 428
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	319
XspI	CTAG	2 cut(s)	38, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.