Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007845

Physical Location & Seq

Genomic Coordinates Forward (+)

27460631 .. 27463547

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1226400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGAGGGAGAATATTAATATTAGTAGAGATGTTGATGGGGGGAAGAAGGGTGGTGATGGGGGTTTGGAAGGATTTGCAGTCGTCTCTTCCACAAGGATTGACTGGAAACCCAGAAAGAGATCACTAATATCATCAGCTAGCGGGAGGAATATAGACAAGGTAACAGGAGACACTGCTAATAATAGTCCCGACAAACAGGAAGTGCCCATCACTGAAGAGGAGATGCAGGACGTAACTGCTGCTCCTGAGCTCTCTGAACGTCGAAAGGCCCTTTTTGAACCCTTGGAACCTATAACAAATATCAATGGGAAGCGACCCTCAGCTGAATCCTTACTTCCTCCGCCAGACTTTGATGCCGCAACCTATCCTAAAGGGTGGTTGATTGGGAAAAAGAGGAAGCTAGTCAATGTCGATGTTGTTGAAAAGATGCGGAGGATTGCCGTTCAAGAAATGAACAGAAAGGATAGGGAGATTGACGGGCTAAATGAGCAGTTGGAAGAGGACGCCAGATGCCTAGAGCACCTGCAACTCCAACTCCTCCAAGAGCGAAGCAAGCGTTCAGACGTGGAGAGAGAGAACGCAATGCTGCAAGACCAGGTTACCATGCTCATGAACATGCTGCAAGACGACACCGTGGACGATGGAGGCCCCGACGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

4.81

Isoelectric Point (pI)

66.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80940 AT1G80940 AT1G80940 AT1G80940
fragaria_vesca	FvH4_6g28270 FvH4_6g28270
malus_domestica	MD09G1227600.v1.1 MD17G1226400.v1.1
prunus_persica	Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1
pyrus_communis	pycom09g14700 pycom17g22980
rosa_chinensis	RchiOBHm_Chr2g0132311
rosa_laevigata	RLG00000019245
rosa_multiflora	Rmu_sc0002795.1_g000008
rosa_roxburghii	Rroxscaffold_2G00112170
rosa_rugosa	Rorug02G0303500 Rorug02G0303600
rosa_samantha	Rh2AG356600 Rh2BG363100 Rh2CG340100 Rh2DG379900
rosa_wichuraiana	Rw2G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	534
AciI	CCGC	4 cut(s)	144, 344, 360, 433
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	281, 425, 449
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	140, 253, 326, 403
AluI	AGCT	4 cut(s)	140, 253, 326, 403
Alw21I	GWGCWC	2 cut(s)	255, 525
Alw26I	GTCTC	2 cut(s)	91, 165
AoxI	GGCC	2 cut(s)	270, 649
ApeKI	GCWGC	3 cut(s)	242, 589, 622
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	271, 650
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	2 cut(s)	255, 525
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	229, 576, 609
BccI	CCATC	4 cut(s)	32, 53, 218, 638
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	91, 165
BfaI	CTAG	3 cut(s)	141, 404, 518
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	4 cut(s)	243, 360, 590, 623
BlsI	GCNGC	4 cut(s)	244, 361, 591, 624
Bme1390I	CCNGG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	271, 650
BmiI	GGNNCC	2 cut(s)	291, 652
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	4 cut(s)	216, 346, 420, 503
BmtI	GCTAGC	1 cut(s)	144
Bpu10I	CCTNAGC	2 cut(s)	249, 322
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	285, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 522, 552
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	285, 636
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	240, 336
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	236, 530
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	229, 576, 609
BshFI	GGCC	2 cut(s)	272, 651
BsiHKAI	GWGCWC	2 cut(s)	255, 525
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	91, 165
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	272, 651
Bsp1286I	GDGCHC	3 cut(s)	210, 255, 525
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	4 cut(s)	144, 344, 360, 433
BspANI	GGCC	2 cut(s)	272, 651
BspCNI	CTCAG	2 cut(s)	241, 335
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	291, 652
BspMI	ACCTGC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	285, 636
BssMI	GATC	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	3 cut(s)	94, 213, 495
BstACI	GRCGYC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	142, 557
BstDEI	CTNAG	2 cut(s)	249, 322
BstDSI	CCRYGG	1 cut(s)	636
BstEII	GGTNACC	1 cut(s)	601
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	2 cut(s)	91, 165
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 556
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	622
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	229, 576, 609
BsuRI	GGCC	2 cut(s)	272, 651
BtgI	CCRYGG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 213
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	142, 557
CciI	TCATGA	1 cut(s)	612
Cfr13I	GGNCC	2 cut(s)	271, 650
CseI	GACGC	1 cut(s)	515
CsiI	ACCWGGT	1 cut(s)	597
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	607, 613, 619
CviJI	RGCY	8 cut(s)	140, 253, 272, 326, 403, 484, 651, 661
CviKI_1	RGCY	8 cut(s)	140, 253, 272, 326, 403, 484, 651, 661
DdeI	CTNAG	2 cut(s)	249, 322
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	94, 213, 495
EarI	CTCTTC	3 cut(s)	94, 213, 495
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	271, 650
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	610, 616, 622
FaiI	YATR	6 cut(s)	155, 296, 608, 614, 620, 664
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	606, 612, 618
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	4 cut(s)	243, 360, 590, 623
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	4 cut(s)	243, 360, 590, 623
FspBI	CTAG	3 cut(s)	141, 404, 518
GluI	GCNGC	4 cut(s)	243, 360, 590, 623
HaeIII	GGCC	2 cut(s)	272, 651
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	610, 616, 622
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	2 cut(s)	259, 565
Hpy188III	TCNNGA	4 cut(s)	191, 248, 449, 613
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	2 cut(s)	267, 659
HpyAV	CCTTC	2 cut(s)	43, 65
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	3 cut(s)	234, 262, 567
HpyCH4V	TGCA	5 cut(s)	80, 229, 529, 592, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 556
HpyF3I	CTNAG	2 cut(s)	249, 322
HpySE526I	ACGT	3 cut(s)	234, 262, 567
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	610, 616, 622
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	3 cut(s)	229, 576, 609
LweI	GCATC	4 cut(s)	216, 346, 420, 503
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	3 cut(s)	141, 404, 518
MaeII	ACGT	3 cut(s)	234, 262, 567
MaeIII	GTNAC	3 cut(s)	163, 235, 601
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	4 cut(s)	58, 81, 230, 512
MhlI	GDGCHC	3 cut(s)	210, 255, 525
MmeI	TCCRAC	2 cut(s)	477, 559
MnlI	CCTC	9 cut(s)	141, 214, 331, 351, 390, 429, 496, 551, 641
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	611, 617
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	490, 556
NdeII	GATC	1 cut(s)	122
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	610, 616, 622
NlaIV	GGNNCC	2 cut(s)	291, 652
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	244, 361, 591, 624
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	291, 652
PspPI	GGNCC	2 cut(s)	271, 650
PvuII	CAGCTG	1 cut(s)	326
RseI	CAYNNNNRTG	2 cut(s)	611, 617
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	4 cut(s)	243, 360, 590, 623
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	271, 650
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	3 cut(s)	210, 255, 525
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	4 cut(s)	216, 346, 420, 503
SmiMI	CAYNNNNRTG	2 cut(s)	611, 617
SsiI	CCGC	4 cut(s)	144, 344, 360, 433
SspI	AATATT	2 cut(s)	16, 22
SspMI	CTAG	3 cut(s)	141, 404, 518
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	3 cut(s)	237, 265, 570
TaqI	TCGA	2 cut(s)	265, 414
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	181, 220
TseI	GCWGC	3 cut(s)	242, 589, 622
TspDTI	ATGAA	2 cut(s)	470, 629
TspRI	CASTG	2 cut(s)	181, 220
VspI	ATTAAT	1 cut(s)	18
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	3 cut(s)	141, 404, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.