Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007845

Physical Location & Seq

Genomic Coordinates Forward (+)

8153188 .. 8156245

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G103600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAGGCCAGATTACAGATGGGAAGAAGGCTGATGGAGCTTTGGAAGGATTTGCTCCTCTCTCTTCTACAAGGATTGATTGGAAACCCAGAAAGAGATCAGCTAGCGGGAGGAATGTAGACAAGATAACAGAAGATACTGCTAATAATACTCCCAACAAACAGGAAGAGCCCGTCACTGAGGAGGAGATGCAGGACTTAGCTCCAGCTCCTGAGCTTTCTGAACGTCGAAAGGCTCTTTTTGAACCCTTAGAACCTGTAACAAATATCAATGGGAAGCGACCATCAGCTGAATCCTTACTTCCTCCGCCAGACTTTGATGCCACAACCTATCCTAAGGGGTGGCTGATTGGAAAAAAGCGAAAGCTAGTCAATGTTGATGTGGTTGAGAGTATGCGCAGGATCGCTGTGCAGGAAATGAACAGAAAGGATAGGGAAATTGATGGACTAAATGAGCAATTGGAAGAGGATGCTAGGTGCCTAGAACACTTGCAACTTCAGCTCCTGCAAGAGCGAAGCAAACGGTCAGAGGTGGAGAGAGAAAATGGAATGCTGCAAGACCAGGTCACCATGCTAATGAACATGCTGGGAGAAGATGACCCGGTGGATGATGAAGGCCCCGACGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.73

Weight (kDa)

4.68

Isoelectric Point (pI)

65.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80940 AT1G80940 AT1G80940 AT1G80940
fragaria_vesca	FvH4_6g28270 FvH4_6g28270
malus_domestica	MD09G1227600.v1.1 MD17G1226400.v1.1
prunus_persica	Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1
pyrus_communis	pycom09g14700 pycom17g22980
rosa_chinensis	RchiOBHm_Chr2g0132311
rosa_laevigata	RLG00000019245
rosa_multiflora	Rmu_sc0002795.1_g000008
rosa_roxburghii	Rroxscaffold_2G00112170
rosa_rugosa	Rorug02G0303500 Rorug02G0303600
rosa_samantha	Rh2AG356600 Rh2BG363100 Rh2CG340100 Rh2DG379900
rosa_wichuraiana	Rw2G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	108, 308
AclWI	GGATC	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	8 cut(s)	41, 104, 203, 209, 217, 290, 367, 502
AluI	AGCT	8 cut(s)	41, 104, 203, 209, 217, 290, 367, 502
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	2 cut(s)	212, 505
AoxI	GGCC	2 cut(s)	7, 616
ApeKI	GCWGC	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	617
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	4 cut(s)	14, 29, 292, 437
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	602
BfaI	CTAG	4 cut(s)	105, 368, 474, 482
BisI	GCNGC	1 cut(s)	554
BlsI	GCNGC	1 cut(s)	555
Bme1390I	CCNGG	2 cut(s)	563, 602
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	479, 619
BmrFI	CCNGG	2 cut(s)	563, 602
BmsI	GCATC	3 cut(s)	180, 310, 460
BmtI	GCTAGC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	475, 613
BseMII	CTCAG	2 cut(s)	171, 204
BseRI	GAGGAG	3 cut(s)	48, 197, 200
BseXI	GCAGC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	586
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	9, 618
BshNI	GGYRCC	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	9, 618
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	98, 402
BspACI	CCGC	2 cut(s)	108, 308
BspANI	GGCC	2 cut(s)	9, 618
BspCNI	CTCAG	2 cut(s)	172, 205
BspLI	GGNNCC	2 cut(s)	479, 619
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	477
BssMI	GATC	2 cut(s)	98, 402
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	3 cut(s)	70, 162, 459
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	5 cut(s)	180, 199, 213, 250, 336
BstEII	GGTNACC	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	475, 613
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	2 cut(s)	101, 405
BstMBI	GATC	2 cut(s)	98, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 499
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	586
BstPI	GGTNACC	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	561, 600
BstV1I	GCAGC	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	9, 618
BtsCI	GGATG	2 cut(s)	475, 613
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	2 cut(s)	212, 505
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	561
CviAII	CATG	2 cut(s)	571, 583
DdeI	CTNAG	5 cut(s)	180, 199, 213, 250, 336
DpnI	GATC	2 cut(s)	100, 404
DpnII	GATC	2 cut(s)	98, 402
Eam1104I	CTCTTC	3 cut(s)	70, 162, 459
EarI	CTCTTC	3 cut(s)	70, 162, 459
EciI	GGCGGA	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	574, 586
FaiI	YATR	4 cut(s)	395, 572, 584, 631
FatI	CATG	2 cut(s)	570, 582
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	554
FokI	GGATG	2 cut(s)	482, 620
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	554
FspBI	CTAG	4 cut(s)	105, 368, 474, 482
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	554
GsaI	CCCAGC	1 cut(s)	590
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	9, 618
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	574, 586
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	223, 529
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	2 cut(s)	231, 626
HpyAV	CCTTC	3 cut(s)	22, 41, 608
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	193, 412, 493, 508, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 499
HpyF3I	CTNAG	5 cut(s)	180, 199, 213, 250, 336
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	574, 586
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	98, 402
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	5 cut(s)	38, 61, 208, 214, 507
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	3 cut(s)	180, 310, 460
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	4 cut(s)	105, 368, 474, 482
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	3 cut(s)	175, 259, 565
MalI	GATC	2 cut(s)	100, 404
MboI	GATC	2 cut(s)	98, 402
MboII	GAAGA	6 cut(s)	37, 57, 146, 179, 476, 605
MfeI	CAATTG	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	438, 458
MnlI	CCTC	7 cut(s)	69, 105, 175, 178, 315, 460, 523
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	563, 602
MunI	CAATTG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	38, 499
NciI	CCSGG	1 cut(s)	602
NdeII	GATC	2 cut(s)	98, 402
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	574, 586
NlaIV	GGNNCC	2 cut(s)	479, 619
NmuCI	GTSAC	2 cut(s)	175, 565
NsbI	TGCGCA	1 cut(s)	398
NspI	RCATGY	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	561
PspEI	GGTNACC	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	479, 619
PspPI	GGNCC	1 cut(s)	617
PstNI	CAGNNNCTG	2 cut(s)	212, 505
PsyI	GACNNNGTC	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	554
Sau3AI	GATC	2 cut(s)	98, 402
Sau96I	GGNCC	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	563, 602
SduI	GDGCHC	1 cut(s)	174
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	3 cut(s)	180, 310, 460
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	2 cut(s)	438, 458
SsiI	CCGC	2 cut(s)	108, 308
SspMI	CTAG	4 cut(s)	105, 368, 474, 482
StyD4I	CCNGG	2 cut(s)	561, 600
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	438, 458
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	175, 565
TseI	GCWGC	1 cut(s)	553
Tsp45I	GTSAC	2 cut(s)	175, 565
TspDTI	ATGAA	3 cut(s)	434, 593, 627
TspRI	CASTG	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	563
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	4 cut(s)	105, 368, 474, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.