Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007845

Physical Location & Seq

Genomic Coordinates Forward (+)

28110380 .. 28117016

Gene Structure 6637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1227600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAGGAGAATATTTATGGTTTAGATGATGATCATGTGGGGAAGAAGATGAAGGGCAGTGATGGGGGTTTGGAAGGATTTGCTTTGGTTTCTTCCACAAGGATTGATTGGAAACCCAGAAGGAGATCACTAATATCATCAGCTAGCGGGAGGAATATAGACAAGGTAACAGAAGACATTGCTAGTGATAGTCCCGACAAACAGGAAGCGTCCATCACCAAAGAGGAAATGCAGGACGTAACTACTGCCGCTGAGCTCTCTGAACGTCGAAAGGCCCTTTTTGAACCCTTAGAACCTATAACAAATATCAATGGCAAACGTCCGTCAGCTGAATCCTTACTTCCTCCACCGGACTTTGATGCCACAACCTATCCCAAAGGGTGGCTGATTGGGAAAAAGAGGAAACTAGTTAACGTTGATGTTGTTGAGAAGATGCGGAGGATTGCTGTTCATGAAATGAACAGAAAGGATAGGGAGATCGACGGGCTAAACGAGCAGTTGGAAGAGGATGCCAGGTGCCTAGAGCACCTGCAACTCCAACTCCTCCAAGAGCGAAGCAAACGTGCAGACATGGAGAGAGAGAACGCAATGCTGCAAGACCAGATAACAATGCTCATGAACATGTTGCAAGACGACCCCGTGGATGACGAAGGCTCCGACGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.36

Weight (kDa)

4.84

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80940 AT1G80940 AT1G80940 AT1G80940
fragaria_vesca	FvH4_6g28270 FvH4_6g28270
malus_domestica	MD09G1227600.v1.1 MD17G1226400.v1.1
prunus_persica	Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1
pyrus_communis	pycom09g14700 pycom17g22980
rosa_chinensis	RchiOBHm_Chr2g0132311
rosa_laevigata	RLG00000019245
rosa_multiflora	Rmu_sc0002795.1_g000008
rosa_roxburghii	Rroxscaffold_2G00112170
rosa_rugosa	Rorug02G0303500 Rorug02G0303600
rosa_samantha	Rh2AG356600 Rh2BG363100 Rh2CG340100 Rh2DG379900
rosa_wichuraiana	Rw2G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	540
Acc36I	ACCTGC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	384
AciI	CCGC	3 cut(s)	150, 252, 439
AclI	AACGTT	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	1 cut(s)	287
AhlI	ACTAGT	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	3 cut(s)	146, 259, 332
AluI	AGCT	3 cut(s)	146, 259, 332
Alw21I	GWGCWC	2 cut(s)	261, 531
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	261, 531
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	2 cut(s)	59, 224
BciT130I	CCWGG	1 cut(s)	517
BclI	TGATCA	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	4 cut(s)	147, 186, 410, 524
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	252, 596
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	2 cut(s)	253, 597
Bme1390I	CCNGG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	521, 658
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	3 cut(s)	352, 426, 502
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	4 cut(s)	528, 558, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	180, 597
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	517, 652
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	2 cut(s)	180, 597
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	582
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	519
BsiHKAI	GWGCWC	2 cut(s)	261, 531
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	261, 531
Bsp143I	GATC	3 cut(s)	34, 128, 480
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	3 cut(s)	150, 252, 439
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	454, 618
BspLI	GGNNCC	2 cut(s)	521, 658
BspMI	ACCTGC	1 cut(s)	540
BspOI	GCTAGC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	180, 597
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	3 cut(s)	34, 128, 480
Bst2UI	CCWGG	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	255, 292
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	517, 652
BstKTI	GATC	3 cut(s)	37, 131, 483
BstMBI	GATC	3 cut(s)	34, 128, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	582
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	2 cut(s)	517, 652
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	2 cut(s)	454, 618
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	201
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	5 cut(s)	38, 455, 574, 619, 625
CviJI	RGCY	8 cut(s)	146, 259, 278, 332, 388, 490, 657, 667
CviKI_1	RGCY	8 cut(s)	146, 259, 278, 332, 388, 490, 657, 667
DdeI	CTNAG	2 cut(s)	255, 292
DpnI	GATC	3 cut(s)	36, 130, 482
DpnII	GATC	3 cut(s)	34, 128, 480
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	5 cut(s)	41, 458, 577, 622, 628
FaiI	YATR	9 cut(s)	21, 39, 161, 302, 456, 575, 620, 626, 670
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	5 cut(s)	37, 454, 573, 618, 624
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	252, 596
FokI	GGATG	2 cut(s)	524, 659
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	252, 596
FspBI	CTAG	4 cut(s)	147, 186, 410, 524
GluI	GCNGC	2 cut(s)	252, 596
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	41, 458, 577, 622, 628
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	1 cut(s)	335
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	265, 661
Hpy188III	TCNNGA	3 cut(s)	197, 455, 619
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	3 cut(s)	273, 488, 665
HpyAV	CCTTC	4 cut(s)	49, 71, 117, 647
HpyCH4IV	ACGT	5 cut(s)	240, 268, 322, 417, 565
HpyCH4V	TGCA	5 cut(s)	235, 535, 569, 598, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	2 cut(s)	255, 292
HpySE526I	ACGT	5 cut(s)	240, 268, 322, 417, 565
Hsp92II	CATG	5 cut(s)	41, 458, 577, 622, 628
Ksp22I	TGATCA	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	34, 128, 480
LmnI	GCTCC	1 cut(s)	662
LpnPI	CCDG	8 cut(s)	133, 191, 221, 366, 502, 529, 545, 617
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	3 cut(s)	352, 426, 502
MaeI	CTAG	4 cut(s)	147, 186, 410, 524
MaeII	ACGT	5 cut(s)	240, 268, 322, 417, 565
MaeIII	GTNAC	2 cut(s)	169, 241
MalI	GATC	3 cut(s)	36, 130, 482
MboI	GATC	3 cut(s)	34, 128, 480
MboII	GAAGA	6 cut(s)	58, 61, 87, 188, 445, 518
MhlI	GDGCHC	2 cut(s)	261, 531
MmeI	TCCRAC	2 cut(s)	483, 565
MnlI	CCTC	7 cut(s)	147, 220, 357, 396, 435, 502, 557
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	254, 332
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	3 cut(s)	34, 128, 480
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	41, 458, 577, 622, 628
NlaIV	GGNNCC	2 cut(s)	521, 658
NspI	RCATGY	1 cut(s)	628
PagI	TCATGA	2 cut(s)	454, 618
PaqCI	CACCTGC	1 cut(s)	540
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 657
PfeI	GAWTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	253, 597
PscI	ACATGT	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	2 cut(s)	521, 658
PspPI	GGNCC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	252, 596
Sau3AI	GATC	3 cut(s)	34, 128, 480
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	261, 531
SfaNI	GCATC	3 cut(s)	352, 426, 502
SmiMI	CAYNNNNRTG	1 cut(s)	623
SpeI	ACTAGT	1 cut(s)	409
SsiI	CCGC	3 cut(s)	150, 252, 439
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	4 cut(s)	147, 186, 410, 524
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	515
TaiI	ACGT	5 cut(s)	243, 271, 325, 420, 568
TaqI	TCGA	2 cut(s)	271, 483
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	68, 443, 471, 476, 635
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	384
XceI	RCATGY	1 cut(s)	628
XspI	CTAG	4 cut(s)	147, 186, 410, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.