Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007845

Physical Location & Seq

Genomic Coordinates Forward (+)

21375090 .. 21377785

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGAGGGAGAATATTAATATTAGTAGAGATGTTGATGGGGGGAAGAAGGGCGGTTATGGGGGTTTGGAAGGATTTGCAGTCGTCTCTTCCACAAGGATTGACTGGAAACCCAGAAGGAGATCACTAATATCGTCAGCTAGCGGGAGGAATATAGACAAGGTAACAGGAGACACTGCTAATAATAGTCCCGACAAACAGGAAGTGCCCATCACTGAAGAGGAGATGCAGGACGTAACTGCTGCTCCTGAGCTCTCTGAACGCCGAAAGGCCCTTTTTGAACCCCTGGAACCTATAACAAATATCAACGGGAAGCGACCCTCAGCTGAATCCTTACTTCCTCCGCCGGACTTTGATGCCGCAACCTATCCTAAAGGGTGGTTGATTGGGAAAAAGAGGAAGCTAGTCAATGTCGATGTTGTTGAAAAGATGCGGAGGATTGCCGTTCAAGAAATGAACAGAAAGGATAGGGAGATTGACGGGCTAAATGAGCAGTTGGAAGAGGACGCCAGATGCCTAGAGCACCTGCAACTCCAACTCCTCCAAGAGCGAAGCAAGCGTTCGGACGTGGAGAGAGAGAACGCGATGCTGCAAGACCAGGTTACCATGCTCATGAACATGTTGCAAGACGACACCGTGGGCGATGAAGGCCCGGACGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.94

Weight (kDa)

4.87

Isoelectric Point (pI)

68.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80940 AT1G80940 AT1G80940 AT1G80940
fragaria_vesca	FvH4_6g28270 FvH4_6g28270
malus_domestica	MD09G1227600.v1.1 MD17G1226400.v1.1
prunus_persica	Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1 Prupe.3G103600_v2.0.a1
pyrus_communis	pycom09g14700 pycom17g22980
rosa_chinensis	RchiOBHm_Chr2g0132311
rosa_laevigata	RLG00000019245
rosa_multiflora	Rmu_sc0002795.1_g000008
rosa_roxburghii	Rroxscaffold_2G00112170
rosa_rugosa	Rorug02G0303500 Rorug02G0303600
rosa_samantha	Rh2AG356600 Rh2BG363100 Rh2CG340100 Rh2DG379900
rosa_wichuraiana	Rw2G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	534
AccII	CGCG	1 cut(s)	584
AciI	CCGC	5 cut(s)	54, 144, 344, 360, 433
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	281, 425, 449
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	285, 597
AluBI	AGCT	4 cut(s)	140, 253, 326, 403
AluI	AGCT	4 cut(s)	140, 253, 326, 403
Alw21I	GWGCWC	2 cut(s)	255, 525
Alw26I	GTCTC	2 cut(s)	91, 165
AoxI	GGCC	2 cut(s)	270, 649
ApeKI	GCWGC	2 cut(s)	242, 589
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	271, 650
AsuC2I	CCSGG	1 cut(s)	653
AsuNHI	GCTAGC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	2 cut(s)	255, 525
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	229, 576
BccI	CCATC	2 cut(s)	32, 218
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	2 cut(s)	287, 599
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	91, 165
BfaI	CTAG	3 cut(s)	141, 404, 518
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	3 cut(s)	243, 360, 590
BlsI	GCNGC	3 cut(s)	244, 361, 591
Bme1390I	CCNGG	3 cut(s)	287, 599, 653
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	271, 650
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	287, 599, 653
BmsI	GCATC	5 cut(s)	216, 346, 420, 503, 576
BmtI	GCTAGC	1 cut(s)	144
Bpu10I	CCTNAGC	2 cut(s)	249, 322
BpuMI	CCSGG	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	285, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 522, 552
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	287, 599
BseDI	CCNNGG	2 cut(s)	285, 636
BseMII	CTCAG	2 cut(s)	240, 336
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	236, 530
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	229, 576
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	2 cut(s)	272, 651
BsiHKAI	GWGCWC	2 cut(s)	255, 525
BsiSI	CCGG	2 cut(s)	347, 653
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	91, 165
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	272, 651
Bsp1286I	GDGCHC	3 cut(s)	210, 255, 525
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	5 cut(s)	54, 144, 344, 360, 433
BspANI	GGCC	2 cut(s)	272, 651
BspCNI	CTCAG	2 cut(s)	241, 335
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	285, 636
BssMI	GATC	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	287, 599
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	3 cut(s)	94, 213, 495
BstACI	GRCGYC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	142, 557
BstDEI	CTNAG	2 cut(s)	249, 322
BstDSI	CCRYGG	1 cut(s)	636
BstEII	GGTNACC	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	2 cut(s)	91, 165
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 556, 648
BstNI	CCWGG	2 cut(s)	287, 599
BstNSI	RCATGY	1 cut(s)	622
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	285, 597, 651
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	229, 576
BsuRI	GGCC	2 cut(s)	272, 651
BtgI	CCRYGG	1 cut(s)	636
BtgZI	GCGATG	2 cut(s)	599, 657
BtrI	CACGTC	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 213
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	142, 557
CciI	TCATGA	1 cut(s)	612
Cfr13I	GGNCC	2 cut(s)	271, 650
CseI	GACGC	1 cut(s)	515
CsiI	ACCWGGT	1 cut(s)	597
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	607, 613, 619
CviJI	RGCY	8 cut(s)	140, 253, 272, 326, 403, 484, 651, 661
CviKI_1	RGCY	8 cut(s)	140, 253, 272, 326, 403, 484, 651, 661
DdeI	CTNAG	2 cut(s)	249, 322
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	94, 213, 495
EarI	CTCTTC	3 cut(s)	94, 213, 495
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	285, 597
EcoT38I	GRGCYC	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	610, 616, 622
FaiI	YATR	7 cut(s)	60, 155, 296, 608, 614, 620, 664
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	606, 612, 618
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	243, 360, 590
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	3 cut(s)	243, 360, 590
FspBI	CTAG	3 cut(s)	141, 404, 518
GluI	GCNGC	3 cut(s)	243, 360, 590
HaeIII	GGCC	2 cut(s)	272, 651
HapII	CCGG	2 cut(s)	347, 653
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	610, 616, 622
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	347, 653
Hpy188I	TCNGA	2 cut(s)	259, 565
Hpy188III	TCNNGA	4 cut(s)	191, 248, 449, 613
HpyAV	CCTTC	4 cut(s)	43, 65, 111, 641
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	2 cut(s)	234, 567
HpyCH4V	TGCA	5 cut(s)	80, 229, 529, 592, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 556, 648
HpyF3I	CTNAG	2 cut(s)	249, 322
HpySE526I	ACGT	2 cut(s)	234, 567
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	610, 616, 622
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	229, 576
LweI	GCATC	5 cut(s)	216, 346, 420, 503, 576
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	3 cut(s)	141, 404, 518
MaeII	ACGT	2 cut(s)	234, 567
MaeIII	GTNAC	3 cut(s)	163, 235, 601
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	4 cut(s)	58, 81, 230, 512
MhlI	GDGCHC	3 cut(s)	210, 255, 525
MmeI	TCCRAC	2 cut(s)	477, 559
MnlI	CCTC	8 cut(s)	141, 214, 331, 351, 390, 429, 496, 551
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	611, 617
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	347, 653
MspR9I	CCNGG	3 cut(s)	287, 599, 653
MvaI	CCWGG	2 cut(s)	287, 599
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	490, 556, 648
NciI	CCSGG	1 cut(s)	653
NdeII	GATC	1 cut(s)	122
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	610, 616, 622
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	534
PciI	ACATGT	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	244, 361, 591
PscI	ACATGT	1 cut(s)	618
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	285, 597
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	285, 597
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	271, 650
PvuII	CAGCTG	1 cut(s)	326
RseI	CAYNNNNRTG	2 cut(s)	611, 617
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	3 cut(s)	243, 360, 590
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	271, 650
ScrFI	CCNGG	3 cut(s)	287, 599, 653
SduI	GDGCHC	3 cut(s)	210, 255, 525
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	5 cut(s)	216, 346, 420, 503, 576
SmiMI	CAYNNNNRTG	2 cut(s)	611, 617
SsiI	CCGC	5 cut(s)	54, 144, 344, 360, 433
SspI	AATATT	2 cut(s)	16, 22
SspMI	CTAG	3 cut(s)	141, 404, 518
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	285, 597, 651
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	2 cut(s)	237, 570
TaqI	TCGA	1 cut(s)	414
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	181, 220
TseI	GCWGC	2 cut(s)	242, 589
TspDTI	ATGAA	3 cut(s)	470, 629, 660
TspRI	CASTG	2 cut(s)	181, 220
VspI	ATTAAT	1 cut(s)	18
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	3 cut(s)	141, 404, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.