Rh2AG356600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007845
Physical Location & Seq
Reverse (-)
52580041 .. 52583702
3662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG356600.1

Sequence Viewer

Length: 648 bp
ATGGAGAACCAGAACGGAGATGGGAATCATAAGAAGGTTGATGGGGCCTTGGAGGGTTTTGCTCCTGTCTCTTCCACTAGAATTGATTGGAAACCCAGAAAGAGATCAGCTGGCGGGAGGAGTATAGAGAAGGTAACAGAGGACACTGCTAACAATACTCCCAACAAACAGGAAGAGTACACCGAGCCCGATGAGGATATGCTTCAGGACTCAACTGCAGCTCCTGAACTGTCGGAGCGTCGAAAGGCTCTGTTTGAACCCTTAGAACCTATGATGAATAGCAATGGGAAACGACCATCAGCTGAGTCCTTACTTCCTCCTCCTGACTTTGATTCCACGAGCTATCCTAAAGGGTGGCTTATTGGAAAAAGGCGAAAGCTGGTTAATGTTGATGTAGTTGAGAAAATGAGGCGGATTGCCATTCAGGAAATGAACAGAAAGGATAGGGAAATTGATGGACTAAACGAGCAATTGGAGGAGGATGCAAGGTGCCTAGAACACTTGCAACTGCAGCTCCTGCAAGAGCGAAGCAAACGTGGGGAAGTCGAGAGAGAGAATGCAATGCTGCAAGACCAGATTACTATGCTTATGGACATGCTGCACGAAGACGGCAATGTTGGAGATGATGAAGGCCCTGCTGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.46

Weight (kDa)

4.8

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AciI CCGC 2 cut(s) 114, 412
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 179
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 6 cut(s) 110, 221, 302, 342, 379, 514
AluI AGCT 6 cut(s) 110, 221, 302, 342, 379, 514
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 2 cut(s) 224, 517
AoxI GGCC 2 cut(s) 45, 631
ApeKI GCWGC 4 cut(s) 218, 511, 565, 598
AspS9I GGNCC 2 cut(s) 45, 632
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 189
BauI CACGAG 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 612
BbvI GCAGC 4 cut(s) 230, 523, 552, 585
BccI CCATC 4 cut(s) 14, 35, 304, 449
BceAI ACGGC 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 78, 494
BfmI CTRYAG 2 cut(s) 216, 509
BisI GCNGC 4 cut(s) 219, 512, 566, 599
BlsI GCNGC 4 cut(s) 220, 513, 567, 600
BmgT120I GGNCC 2 cut(s) 45, 632
BmiI GGNNCC 2 cut(s) 46, 491
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 498, 528
Bse3DI GCAATG 3 cut(s) 289, 567, 619
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 24
BseMI GCAATG 3 cut(s) 289, 567, 619
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 3 cut(s) 133, 309, 491
BseXI GCAGC 4 cut(s) 230, 523, 552, 585
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 2 cut(s) 47, 633
BshNI GGYRCC 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 47, 633
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 2 cut(s) 114, 412
BspANI GGCC 2 cut(s) 47, 633
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 46, 491
BspMAI CTGCAG 2 cut(s) 220, 513
BspT107I GGYRCC 1 cut(s) 489
BsrDI GCAATG 3 cut(s) 289, 567, 619
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 104
BssSI CACGAG 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 2 cut(s) 76, 168
BstAPI GCANNNNNTGC 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 262, 303
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 511, 517
BstNSI RCATGY 1 cut(s) 598
BstSFI CTRYAG 2 cut(s) 216, 509
BstV1I GCAGC 4 cut(s) 230, 523, 552, 585
BstV2I GAAGAC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 47, 633
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 2 cut(s) 224, 517
Cfr13I GGNCC 2 cut(s) 45, 632
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 2 cut(s) 595, 645
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 262, 303
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 76, 168
EarI CTCTTC 2 cut(s) 76, 168
EciI GGCGGA 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 188
EcoO109I RGGNCCY 2 cut(s) 45, 632
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 598, 648
FaiI YATR 8 cut(s) 30, 125, 200, 272, 584, 590, 596, 646
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 2 cut(s) 594, 644
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 219, 512, 566, 599
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 219, 512, 566, 599
FspBI CTAG 2 cut(s) 78, 494
GluI GCNGC 4 cut(s) 219, 512, 566, 599
HaeIII GGCC 2 cut(s) 47, 633
HgaI GACGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 598, 648
HinfI GANTC 4 cut(s) 25, 209, 305, 332
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 5 cut(s) 206, 224, 323, 425, 547
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 28, 124, 623
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 8 cut(s) 218, 485, 505, 511, 520, 560, 568, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 511, 517
HpyF3I CTNAG 2 cut(s) 262, 303
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 2 cut(s) 598, 648
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 4 cut(s) 67, 226, 235, 519
Lsp1109I GCAGC 4 cut(s) 230, 523, 552, 585
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 78, 494
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 3 cut(s) 63, 185, 617
MfeI CAATTG 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 81, 450, 470
MlyI GAGTC 2 cut(s) 203, 314
MmeI TCCRAC 2 cut(s) 213, 598
MnlI CCTC 9 cut(s) 46, 111, 133, 187, 327, 330, 402, 469, 472
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 2 cut(s) 110, 302
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 511, 517
NdeII GATC 1 cut(s) 104
NlaIII CATG 2 cut(s) 598, 648
NlaIV GGNNCC 2 cut(s) 46, 491
NspI RCATGY 1 cut(s) 598
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 25, 332
PkrI GCNGC 4 cut(s) 220, 513, 567, 600
PleI GAGTC 2 cut(s) 203, 313
PpsI GAGTC 2 cut(s) 203, 313
PspN4I GGNNCC 2 cut(s) 46, 491
PspPI GGNCC 2 cut(s) 45, 632
PstI CTGCAG 2 cut(s) 220, 513
PstNI CAGNNNCTG 2 cut(s) 224, 517
PvuII CAGCTG 2 cut(s) 110, 302
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 4 cut(s) 219, 512, 566, 599
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 2 cut(s) 45, 632
SchI GAGTC 2 cut(s) 203, 314
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 2 cut(s) 216, 509
Sse9I AATT 3 cut(s) 81, 450, 470
SsiI CCGC 2 cut(s) 114, 412
SspMI CTAG 2 cut(s) 78, 494
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 241, 546
TasI AATT 3 cut(s) 81, 450, 470
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 2 cut(s) 25, 332
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 151
TseI GCWGC 4 cut(s) 218, 511, 565, 598
TspDTI ATGAA 3 cut(s) 290, 446, 642
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 151
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 2 cut(s) 78, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.