FvH4_6g28880

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016889
Physical Location & Seq
Forward (+)
22307575 .. 22308853
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28880.t1

Sequence Viewer

Length: 606 bp
ATGGCTAGGTCCCAACAACGTTATCGCGGTGTCCGACAAAGACATTGGGGTTCTTGGGTCTCTGAAATCCGCCACCCCTTACTGAAGACAAGAATTTGGCTAGGCACGTTCGAAACGGCGGAGGACGCAGCGCGAGCTTACGACGAAGCGGCGAGACTCATGTGCGGTCCAAAAGCACGTACCAATTTCCCATTCAATCCCAACGACGACATGTCTCATTCATCCAATCTTCTCTCTTCAGCTTTGATAGCAAAGCTTCACAAATGCAACATGGCCTCTCTTCAAATGACTAAAAAACCAGCCTCAAAGGAGGAGCCAGTGCAAGAAGTAGTGATGCAGCAACAATATATGCCATCCGGTACTTCTACTGCTAGCTGCATTGTCGAAAACAGCGGCTTTTCTGGGTTCGATTGGTCAGAGAAGAGAGAGTATGGTGGAGCTCAATGTGGTGCGGGGAATTGGGTTGGTGAGACGGGTGTTAAAGTTGAGAATTATGATCACCATATGGAGTTTTCTCAGCCGCTTGAGGAGGATCACATTGAGCAAATGATAGAGGAGTTGCTTGATTATGGGTACATTGAGCTTTGTCCTGGGATTCAAGCATAG

Protein Analysis

202

Amino Acids

22.75

Weight (kDa)

5.51

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 7 - 56 2e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016889)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28880
malus_domestica MD17G1220600.v1.1
prunus_persica Prupe.3G096000_v2.0.a1
pyrus_communis pycom17g22520
rosa_chinensis RchiOBHm_Chr2g0133451
rosa_laevigata RLG00000019335
rosa_multiflora Rmu_sc0006007.1_g000007
rosa_roxburghii Rroxscaffold_2G00111120
rosa_rugosa Rorug02G0311800
rosa_samantha Rh2AG364400 Rh2BG370100 Rh2CG347600 Rh2DG387000
rosa_wichuraiana Rw2G029680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 27, 133
AciI CCGC 8 cut(s) 27, 70, 119, 149, 165, 393, 452, 521
AclI AACGTT 1 cut(s) 19
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 2 cut(s) 104, 222
AfaI GTAC 3 cut(s) 181, 361, 575
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 3 cut(s) 196, 284, 599
AhdI GACNNNNNGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 6 cut(s) 137, 242, 256, 375, 440, 583
AluI AGCT 6 cut(s) 137, 242, 256, 375, 440, 583
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 4 cut(s) 64, 148, 219, 464
AlwI GGATC 1 cut(s) 540
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 128, 337, 375
ApoI RAATTY 1 cut(s) 93
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 9, 167
AsuHPI GGTGA 2 cut(s) 479, 491
AsuII TTCGAA 1 cut(s) 111
AsuNHI GCTAGC 1 cut(s) 371
AvaII GGWCC 2 cut(s) 9, 167
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 3 cut(s) 140, 349, 362
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 4 cut(s) 64, 148, 219, 464
BfaI CTAG 3 cut(s) 6, 101, 372
BisI GCNGC 6 cut(s) 129, 150, 338, 376, 394, 521
BlsI GCNGC 6 cut(s) 130, 151, 339, 377, 395, 522
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 2 cut(s) 9, 167
BmeRI GACNNNNNGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 9, 167
BmiI GGNNCC 2 cut(s) 11, 315
BmrFI CCNGG 1 cut(s) 591
BmsI GCATC 1 cut(s) 324
BmtI GCTAGC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 590
BsaWI WCCGGW 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 590
BseGI GGATG 2 cut(s) 221, 353
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 3 cut(s) 326, 542, 569
BseXI GCAGC 3 cut(s) 140, 349, 362
Bsh1236I CGCG 2 cut(s) 27, 133
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 357
BsmAI GTCTC 4 cut(s) 64, 148, 219, 464
BsmBI CGTCTC 1 cut(s) 464
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 2 cut(s) 496, 532
BspACI CCGC 8 cut(s) 27, 70, 119, 149, 165, 393, 452, 521
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 2 cut(s) 27, 133
BspLI GGNNCC 2 cut(s) 11, 315
BspOI GCTAGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 590
BssMI GATC 2 cut(s) 496, 532
Bst2UI CCWGG 1 cut(s) 591
Bst6I CTCTTC 3 cut(s) 241, 285, 416
BstBAI YACGTR 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 135, 373
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 221, 353
BstFNI CGCG 2 cut(s) 27, 133
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 499, 535
BstMAI GTCTC 4 cut(s) 64, 148, 219, 464
BstMBI GATC 2 cut(s) 496, 532
BstMWI GCNNNNNNNGC 3 cut(s) 125, 134, 248
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 589
BstUI CGCG 2 cut(s) 27, 133
BstV1I GCAGC 3 cut(s) 140, 349, 362
BstV2I GAAGAC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 221, 353
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 135, 373
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 9, 167
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 180, 360, 574
CviAII CATG 3 cut(s) 160, 211, 271
CviQI GTAC 3 cut(s) 180, 360, 574
DdeI CTNAG 1 cut(s) 516
DpnI GATC 2 cut(s) 498, 534
DpnII GATC 2 cut(s) 496, 532
DriI GACNNNNNGTC 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 241, 285, 416
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 3 cut(s) 241, 285, 416
EciI GGCGGA 2 cut(s) 59, 134
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 9, 167
Eco53kI GAGCTC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 104, 222
EcoICRI GAGCTC 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 3 cut(s) 163, 214, 274
FatI CATG 3 cut(s) 159, 210, 270
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 504
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 6 cut(s) 129, 150, 338, 376, 394, 521
FokI GGATG 2 cut(s) 208, 340
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 6 cut(s) 129, 150, 338, 376, 394, 521
FspBI CTAG 3 cut(s) 6, 101, 372
GlaI GCGC 1 cut(s) 132
GluI GCNGC 6 cut(s) 129, 150, 338, 376, 394, 521
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 357
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 133
Hin1II CATG 3 cut(s) 163, 214, 274
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 156, 595
HpaII CCGG 1 cut(s) 357
HphI GGTGA 2 cut(s) 479, 491
Hpy188I TCNGA 3 cut(s) 35, 64, 418
Hpy99I CGWCG 2 cut(s) 146, 209
HpyCH4IV ACGT 3 cut(s) 19, 107, 178
HpyCH4V TGCA 4 cut(s) 267, 322, 337, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 134, 248
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 3 cut(s) 19, 107, 178
Hsp92II CATG 3 cut(s) 163, 214, 274
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 496, 532
LmnI GCTCC 2 cut(s) 313, 437
LpnPI CCDG 5 cut(s) 312, 330, 370, 387, 576
Lsp1109I GCAGC 3 cut(s) 140, 349, 362
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 6, 101, 372
MaeII ACGT 3 cut(s) 19, 107, 178
MalI GATC 2 cut(s) 498, 534
MboI GATC 2 cut(s) 496, 532
MboII GAAGA 5 cut(s) 97, 221, 228, 272, 433
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 4 cut(s) 93, 184, 457, 490
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 7 cut(s) 115, 286, 304, 313, 520, 523, 547
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 2 cut(s) 27, 133
MwoI GCNNNNNNNGC 3 cut(s) 125, 134, 248
NdeI CATATG 1 cut(s) 504
NdeII GATC 2 cut(s) 496, 532
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 3 cut(s) 163, 214, 274
NlaIV GGNNCC 2 cut(s) 11, 315
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 111
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PfeI GAWTC 1 cut(s) 595
PkrI GCNGC 6 cut(s) 130, 151, 339, 377, 395, 522
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 9
PscI ACATGT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 442
Psp1406I AACGTT 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 11, 315
PspPI GGNCC 2 cut(s) 9, 167
PspPPI RGGWCCY 1 cut(s) 9
RsaI GTAC 3 cut(s) 181, 361, 575
RsaNI GTAC 3 cut(s) 180, 360, 574
SacI GAGCTC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 6 cut(s) 129, 150, 338, 376, 394, 521
Sau3AI GATC 2 cut(s) 496, 532
Sau96I GGNCC 2 cut(s) 9, 167
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 9, 167
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 4 cut(s) 93, 184, 457, 490
SsiI CCGC 8 cut(s) 27, 70, 119, 149, 165, 393, 452, 521
SspMI CTAG 3 cut(s) 6, 101, 372
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 589
TaiI ACGT 3 cut(s) 22, 110, 181
TaqI TCGA 3 cut(s) 111, 384, 408
TasI AATT 4 cut(s) 93, 184, 457, 490
TauI GCSGC 3 cut(s) 152, 396, 523
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 324
TseI GCWGC 3 cut(s) 128, 337, 375
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 9, 167
XapI RAATTY 1 cut(s) 93
XceI RCATGY 1 cut(s) 214
XspI CTAG 3 cut(s) 6, 101, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.