Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016889

Physical Location & Seq

Genomic Coordinates Forward (+)

56011036 .. 56012371

Gene Structure 1336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTAGGTCCCAACAGCGTTATCGCGGCGTCCGACAAAGGCATTGGGGTTCTTGGGTTTCTGAAATTCGCCACCCTTTACTAAAGACAAGAATTTGGCTAGGCACGTTCGAAACGGCGGAGGACGCAGCGCGAGCCTACGACGAAGCGGCGAGACTCATGTGCGGTCCAAAAGCACGTACCAATTTCCCATTCAATCCCAACGACCACATGTCACATTCATCCCAGCTTCTCTCATCAGCTTTGATAGCAAAGCTTCACAAATGCAACATGGCCTCTCTACAAATGACGAAAAAACCAGCCCCAAAAGAGGAGCCAGTGCAACAAGTAGTGCTGCAGCAACAGTATATGCCATCCGTCACTTCTAGTAGTAGCTGCATTGTCGAAAACAGCGGCTTTTCAGGGTTGGATTGGTCGGAGAAGAGGAAGTACGGTGGAGTTCAATGGGGTGAGGGGAATTGGGTTGGTGAGGTGGGTGTTCAAGTTGAGAATCATGATCAACATCAGGAGCTTTTTCAGCCGCTTGAGGAGGATCACATTGAGCAAATGATAGAGGAGTTGCTTGATTATGGATACATTGAGCTTTGTCCCGGGGTTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

201

Amino Acids

22.93

Weight (kDa)

5.9

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 56	2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016889)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28880
malus_domestica	MD17G1220600.v1.1
prunus_persica	Prupe.3G096000_v2.0.a1
pyrus_communis	pycom17g22520
rosa_chinensis	RchiOBHm_Chr2g0133451
rosa_laevigata	RLG00000019335
rosa_multiflora	Rmu_sc0006007.1_g000007
rosa_roxburghii	Rroxscaffold_2G00111120
rosa_rugosa	Rorug02G0311800
rosa_samantha	Rh2AG364400 Rh2BG370100 Rh2CG347600 Rh2DG387000
rosa_wichuraiana	Rw2G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 133
AciI	CCGC	6 cut(s)	27, 119, 149, 165, 393, 521
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	2 cut(s)	66, 93
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	181, 431
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	196, 443, 482, 599
AhdI	GACNNNNNGTC	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	6 cut(s)	229, 242, 256, 375, 511, 583
AluI	AGCT	6 cut(s)	229, 242, 256, 375, 511, 583
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	540
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	128, 334, 337, 375
ApoI	RAATTY	2 cut(s)	66, 93
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	9, 167
AsuC2I	CCSGG	2 cut(s)	591, 592
AsuHPI	GGTGA	2 cut(s)	461, 479
AsuII	TTCGAA	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	9, 167
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbvI	GCAGC	4 cut(s)	140, 321, 349, 362
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	591, 592
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	3 cut(s)	6, 101, 366
BfmI	CTRYAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	8 cut(s)	28, 129, 150, 335, 338, 376, 394, 521
BlsI	GCNGC	8 cut(s)	29, 130, 151, 336, 339, 377, 395, 522
Bme1390I	CCNGG	2 cut(s)	591, 592
Bme18I	GGWCC	2 cut(s)	9, 167
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	9, 167
BmiI	GGNNCC	2 cut(s)	11, 315
BmrFI	CCNGG	2 cut(s)	591, 592
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	2 cut(s)	591, 592
BsaAI	YACGTR	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	590, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	590, 591
BseGI	GGATG	2 cut(s)	221, 353
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	3 cut(s)	326, 542, 569
BseXI	GCAGC	4 cut(s)	140, 321, 349, 362
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	27, 133
BshFI	GGCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	496, 532
BspACI	CCGC	6 cut(s)	27, 119, 149, 165, 393, 521
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	2 cut(s)	27, 133
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	11, 315
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	590, 591
BssMI	GATC	2 cut(s)	496, 532
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	345, 434
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	221, 353
BstFNI	CGCG	2 cut(s)	27, 133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	499, 535
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	496, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 248, 517
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	589, 590
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	2 cut(s)	27, 133
BstV1I	GCAGC	4 cut(s)	140, 321, 349, 362
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	221, 353
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	9, 167
Cfr9I	CCCGGG	1 cut(s)	590
CseI	GACGC	2 cut(s)	19, 134
Csp6I	GTAC	2 cut(s)	180, 430
CviAII	CATG	4 cut(s)	160, 211, 271, 494
CviQI	GTAC	2 cut(s)	180, 430
DpnI	GATC	2 cut(s)	498, 534
DpnII	GATC	2 cut(s)	496, 532
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	416
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	9, 167
Eco88I	CYCGRG	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	9
FaeI	CATG	4 cut(s)	163, 214, 274, 497
FaiI	YATR	8 cut(s)	161, 212, 272, 348, 350, 495, 570, 604
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	159, 210, 270, 493
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	8 cut(s)	28, 129, 150, 335, 338, 376, 394, 521
FokI	GGATG	2 cut(s)	208, 340
Fsp4HI	GCNGC	8 cut(s)	28, 129, 150, 335, 338, 376, 394, 521
FspBI	CTAG	3 cut(s)	6, 101, 366
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	8 cut(s)	28, 129, 150, 335, 338, 376, 394, 521
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	2 cut(s)	19, 134
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	163, 214, 274, 497
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	156, 490
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	2 cut(s)	461, 479
Hpy188I	TCNGA	3 cut(s)	35, 64, 418
Hpy188III	TCNNGA	2 cut(s)	494, 506
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	345, 434
HpyCH4IV	ACGT	2 cut(s)	107, 178
HpyCH4V	TGCA	4 cut(s)	267, 322, 337, 378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 248, 517
HpySE526I	ACGT	2 cut(s)	107, 178
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	163, 214, 274, 497
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	496, 532
LmnI	GCTCC	2 cut(s)	313, 508
LpnPI	CCDG	5 cut(s)	239, 312, 330, 387, 491
Lsp1109I	GCAGC	4 cut(s)	140, 321, 349, 362
MaeI	CTAG	3 cut(s)	6, 101, 366
MaeII	ACGT	2 cut(s)	107, 178
MaeIII	GTNAC	2 cut(s)	213, 358
MalI	GATC	2 cut(s)	498, 534
MboI	GATC	2 cut(s)	496, 532
MboII	GAAGA	1 cut(s)	433
MluCI	AATT	4 cut(s)	66, 93, 184, 457
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	3 cut(s)	58, 387, 396
MnlI	CCTC	9 cut(s)	115, 286, 304, 417, 445, 463, 520, 523, 547
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	591, 592
MvnI	CGCG	2 cut(s)	27, 133
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 248, 517
NciI	CCSGG	2 cut(s)	591, 592
NdeII	GATC	2 cut(s)	496, 532
NlaIII	CATG	4 cut(s)	163, 214, 274, 497
NlaIV	GGNNCC	2 cut(s)	11, 315
NmuCI	GTSAC	2 cut(s)	213, 358
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	8 cut(s)	29, 130, 151, 336, 339, 377, 395, 522
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	9
PscI	ACATGT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	11, 315
PspPI	GGNCC	2 cut(s)	9, 167
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	181, 431
RsaNI	GTAC	2 cut(s)	180, 430
SatI	GCNGC	8 cut(s)	28, 129, 150, 335, 338, 376, 394, 521
Sau3AI	GATC	2 cut(s)	496, 532
Sau96I	GGNCC	2 cut(s)	9, 167
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	591, 592
SfcI	CTRYAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	9, 167
SmaI	CCCGGG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	4 cut(s)	66, 93, 184, 457
SsiI	CCGC	6 cut(s)	27, 119, 149, 165, 393, 521
SspMI	CTAG	3 cut(s)	6, 101, 366
StyD4I	CCNGG	2 cut(s)	589, 590
TaaI	ACNGT	2 cut(s)	345, 434
TaiI	ACGT	2 cut(s)	110, 181
TaqI	TCGA	2 cut(s)	111, 384
TasI	AATT	4 cut(s)	66, 93, 184, 457
TauI	GCSGC	4 cut(s)	30, 152, 396, 523
TfiI	GAWTC	1 cut(s)	490
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	213, 358
TseI	GCWGC	4 cut(s)	128, 334, 337, 375
Tsp45I	GTSAC	2 cut(s)	213, 358
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	346
TspMI	CCCGGG	1 cut(s)	590
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	9, 167
XapI	RAATTY	2 cut(s)	66, 93
XceI	RCATGY	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	590
XspI	CTAG	3 cut(s)	6, 101, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.