Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016889

Physical Location & Seq

Genomic Coordinates Reverse (-)

7214951 .. 7216078

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTAGATCCCACCAGCGGTATCGCGGCGTCCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTTTACTGAAGACTAGAATTTGGTTAGGCACATTCGAAACGGCGGAGGACGCAGCAAGAGCATACGATGAAGCAGCGAGGCTCATGTGCGGCACAAAGGCACGTACCAATTTCTCATACAATCCCGATGAGACCATGTCACATTCATCCAAGCTTCTCTCGGCAGCTTTGATTGCAAAGCTCCACAAATGCAACATGGCTTCTCTTCAAATGGCCAAAACTACTAATAACAAGCCAGTTCCAAAGGAGGAGCCACAGCAACAAGTACACTACATGCCAGCAGCCCCTTCTGCCACCTGCATTATCGAAACCGGAGACGTTTCGGGTTTCGATTGGCCCGAGAAGATCAGAGAGTACAGTGGAGTGCAGCAATGGGTTGAACAGGGGAGCTGGGTTGGTGGTGGTGATCAGGTACTCGAGAGTCCACATGATCATCAGCAGCATCATCAGCATCAGCATCAGCAGGAGTTTATTGAGAGACTTGAGGATGATCATATAGAGCAGATGATTGAGGAGCTGCTTGATTATGGTCACATTGAGATTTGTCCTGGTGTTTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

5.94

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016889)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28880
malus_domestica	MD17G1220600.v1.1
prunus_persica	Prupe.3G096000_v2.0.a1
pyrus_communis	pycom17g22520
rosa_chinensis	RchiOBHm_Chr2g0133451
rosa_laevigata	RLG00000019335
rosa_multiflora	Rmu_sc0006007.1_g000007
rosa_roxburghii	Rroxscaffold_2G00111120
rosa_rugosa	Rorug02G0311800
rosa_samantha	Rh2AG364400 Rh2BG370100 Rh2CG347600 Rh2DG387000
rosa_wichuraiana	Rw2G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	380
AccII	CGCG	1 cut(s)	27
AciI	CCGC	4 cut(s)	19, 27, 119, 165
AclWI	GGATC	1 cut(s)	3
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	66, 93
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	4 cut(s)	181, 342, 431, 489
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	284, 455, 633
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	5 cut(s)	229, 242, 256, 465, 592
AluI	AGCT	5 cut(s)	229, 242, 256, 465, 592
Alw26I	GTCTC	5 cut(s)	34, 64, 200, 384, 547
AlwI	GGATC	1 cut(s)	3
Ama87I	CYCGRG	2 cut(s)	413, 491
AoxI	GGCC	2 cut(s)	288, 410
ApeKI	GCWGC	7 cut(s)	128, 149, 239, 356, 442, 514, 592
ApoI	RAATTY	2 cut(s)	66, 93
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	111
AvaI	CYCGRG	2 cut(s)	413, 491
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	7 cut(s)	140, 161, 251, 368, 454, 526, 579
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	3 cut(s)	481, 505, 565
BcoDI	GTCTC	5 cut(s)	34, 64, 200, 384, 547
BfaI	CTAG	2 cut(s)	6, 90
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	9 cut(s)	28, 129, 150, 166, 240, 357, 443, 515, 593
BlsI	GCNGC	9 cut(s)	29, 130, 151, 167, 241, 358, 444, 516, 594
Bme1390I	CCNGG	1 cut(s)	624
BmeT110I	CYCGRG	2 cut(s)	413, 491
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	526, 535, 541
BpiI	GAAGAC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	2 cut(s)	64, 200
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	624
BseGI	GGATG	2 cut(s)	221, 568
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	338, 602
BseXI	GCAGC	7 cut(s)	140, 161, 251, 368, 454, 526, 579
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	290, 412
BsiHKCI	CYCGRG	2 cut(s)	413, 491
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	5 cut(s)	34, 64, 200, 384, 547
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	290, 412
Bso31I	GGTCTC	2 cut(s)	64, 200
BsoBI	CYCGRG	2 cut(s)	413, 491
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	5 cut(s)	8, 420, 481, 505, 565
BspACI	CCGC	4 cut(s)	19, 27, 119, 165
BspANI	GGCC	2 cut(s)	290, 412
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	2 cut(s)	64, 200
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	5 cut(s)	8, 420, 481, 505, 565
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	221, 568
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	5 cut(s)	11, 423, 484, 508, 568
BstMAI	GTCTC	5 cut(s)	34, 64, 200, 384, 547
BstMBI	GATC	5 cut(s)	8, 420, 481, 505, 565
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 134, 248, 365, 523
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	622
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	7 cut(s)	140, 161, 251, 368, 454, 526, 579
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	290, 412
BtsCI	GGATG	2 cut(s)	221, 568
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	2 cut(s)	19, 134
Csp6I	GTAC	4 cut(s)	180, 341, 430, 488
CviAII	CATG	5 cut(s)	160, 211, 271, 349, 503
CviQI	GTAC	4 cut(s)	180, 341, 430, 488
DpnI	GATC	5 cut(s)	10, 422, 483, 507, 567
DpnII	GATC	5 cut(s)	8, 420, 481, 505, 565
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	134
Eco31I	GGTCTC	2 cut(s)	64, 200
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	413, 491
EcoRII	CCWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	5 cut(s)	163, 214, 274, 352, 506
FatI	CATG	5 cut(s)	159, 210, 270, 348, 502
FbaI	TGATCA	3 cut(s)	481, 505, 565
Fnu4HI	GCNGC	9 cut(s)	28, 129, 150, 166, 240, 357, 443, 515, 593
FokI	GGATG	2 cut(s)	208, 575
Fsp4HI	GCNGC	9 cut(s)	28, 129, 150, 166, 240, 357, 443, 515, 593
FspBI	CTAG	2 cut(s)	6, 90
GluI	GCNGC	9 cut(s)	28, 129, 150, 166, 240, 357, 443, 515, 593
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	290, 412
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	2 cut(s)	19, 134
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	163, 214, 274, 352, 506
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	343, 500
Hpy188I	TCNGA	3 cut(s)	35, 64, 425
Hpy188III	TCNNGA	2 cut(s)	200, 493
Hpy8I	GTNNAC	2 cut(s)	343, 500
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	178, 393
HpyCH4V	TGCA	4 cut(s)	251, 267, 375, 442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 134, 248, 365, 523
HpySE526I	ACGT	2 cut(s)	178, 393
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	5 cut(s)	163, 214, 274, 352, 506
Ksp22I	TGATCA	3 cut(s)	481, 505, 565
Kzo9I	GATC	5 cut(s)	8, 420, 481, 505, 565
LmnI	GCTCC	4 cut(s)	261, 325, 462, 589
Lsp1109I	GCAGC	7 cut(s)	140, 161, 251, 368, 454, 526, 579
LweI	GCATC	3 cut(s)	526, 535, 541
MaeI	CTAG	2 cut(s)	6, 90
MaeII	ACGT	2 cut(s)	178, 393
MaeIII	GTNAC	2 cut(s)	213, 605
MalI	GATC	5 cut(s)	10, 422, 483, 507, 567
MboI	GATC	5 cut(s)	8, 420, 481, 505, 565
MboII	GAAGA	3 cut(s)	97, 272, 430
MflI	RGATCY	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	66, 93, 184
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	115, 147, 316, 553, 580
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	125, 134, 248, 365, 523
NdeII	GATC	5 cut(s)	8, 420, 481, 505, 565
NlaIII	CATG	5 cut(s)	163, 214, 274, 352, 506
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	213, 605
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	491
PaqCI	CACCTGC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 411
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	9 cut(s)	29, 130, 151, 167, 241, 358, 444, 516, 594
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	4 cut(s)	181, 342, 431, 489
RsaNI	GTAC	4 cut(s)	180, 341, 430, 488
SatI	GCNGC	9 cut(s)	28, 129, 150, 166, 240, 357, 443, 515, 593
Sau3AI	GATC	5 cut(s)	8, 420, 481, 505, 565
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	624
SetI	ASST	9 cut(s)	181, 231, 244, 258, 374, 396, 467, 489, 594
SfaNI	GCATC	3 cut(s)	526, 535, 541
Sfr274I	CTCGAG	1 cut(s)	491
SfuI	TTCGAA	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	491, 557
SmoI	CTYRAG	2 cut(s)	491, 557
Sse9I	AATT	3 cut(s)	66, 93, 184
SsiI	CCGC	4 cut(s)	19, 27, 119, 165
SspMI	CTAG	2 cut(s)	6, 90
StyD4I	CCNGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	181, 396
TaqI	TCGA	4 cut(s)	111, 381, 405, 492
TasI	AATT	3 cut(s)	66, 93, 184
TatI	WGTACW	2 cut(s)	340, 429
TauI	GCSGC	2 cut(s)	30, 168
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	213, 605
TseI	GCWGC	7 cut(s)	128, 149, 239, 356, 442, 514, 592
Tsp45I	GTSAC	2 cut(s)	213, 605
TspDTI	ATGAA	2 cut(s)	159, 210
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	66, 93
XceI	RCATGY	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	491
XspI	CTAG	2 cut(s)	6, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.