Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016889

Physical Location & Seq

Genomic Coordinates Reverse (-)

26952408 .. 26953440

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1220600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTAGATCCCAGCAGCGGTATCGAGGCGTCCGACAGAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGCCACCCTCTACTGAAGACACGAATTTGGCTAGGCACATTCGAAACTGCGGAGGACGCTGCACGAGCATACGATGAAGCAGCAAGGCTCATGTGTGGCCTAAAAGCGCGCACAAATTTCCCATACAATCCTAACGAGCCCATGTCGCATTCATCCACGCTTCTCTCAGCAGCTTTGATGGCAAAGCTGCACAAATGCAACATGGCCTCTCTCCAAATGGCCAAAACTACCAAACCTTCAGTGCCAAAGGAGGAGCCCCAAGAACAAGTACACATGCCGCTCCCTTCTACCACCTGGATTACCGGAAAAGGGGGCGAGAAGGTCAGGGATTATAGCGGAGCAGAACAATGGGTAGATCATGGGAGCTGGGTTGGTGGTGATCTGCAGGGGGTTCCTCATGATCATCATCATCATCAGCAGGAGTTTATTAAGCCTCTTGAGGATGATCATATTGAGCAGATGATTGAGGAGCTTCTTGATTATGGCTACATTGAGATTTGTCCTGGTGTTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

196

Amino Acids

22.2

Weight (kDa)

6.3

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 56	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016889)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28880
malus_domestica	MD17G1220600.v1.1
prunus_persica	Prupe.3G096000_v2.0.a1
pyrus_communis	pycom17g22520
rosa_chinensis	RchiOBHm_Chr2g0133451
rosa_laevigata	RLG00000019335
rosa_multiflora	Rmu_sc0006007.1_g000007
rosa_roxburghii	Rroxscaffold_2G00111120
rosa_rugosa	Rorug02G0311800
rosa_samantha	Rh2AG364400 Rh2BG370100 Rh2CG347600 Rh2DG387000
rosa_wichuraiana	Rw2G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	349
AccII	CGCG	1 cut(s)	178
AciI	CCGC	4 cut(s)	19, 119, 347, 405
AclWI	GGATC	1 cut(s)	3
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	93, 184
AcuI	CTGAAG	2 cut(s)	104, 291
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	18, 378
AjnI	CCWGG	2 cut(s)	362, 571
AluBI	AGCT	4 cut(s)	242, 256, 435, 541
AluI	AGCT	4 cut(s)	242, 256, 435, 541
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	3
AoxI	GGCC	3 cut(s)	166, 273, 288
ApeKI	GCWGC	5 cut(s)	16, 128, 149, 239, 256
ApoI	RAATTY	2 cut(s)	93, 184
AspLEI	GCGC	2 cut(s)	178, 180
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	3 cut(s)	53, 210, 327
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	5 cut(s)	28, 115, 161, 243, 251
BccI	CCATC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	364, 573
BclI	TGATCA	2 cut(s)	469, 514
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	6, 101
BfmI	CTRYAG	1 cut(s)	452
BisI	GCNGC	6 cut(s)	17, 129, 150, 240, 257, 347
BlsI	GCNGC	6 cut(s)	18, 130, 151, 241, 258, 348
Bme1390I	CCNGG	2 cut(s)	364, 573
BmiI	GGNNCC	2 cut(s)	324, 462
BmrFI	CCNGG	2 cut(s)	364, 573
BpiI	GAAGAC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 378
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	364, 573
BseGI	GGATG	2 cut(s)	221, 517
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	18, 378
BseMII	CTCAG	1 cut(s)	249
BsePI	GCGCGC	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	335, 551
BseXI	GCAGC	5 cut(s)	28, 115, 161, 243, 251
BseYI	CCCAGC	2 cut(s)	12, 435
BsgI	GTGCAG	2 cut(s)	114, 242
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	168, 275, 290
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	18, 378
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	168, 275, 290
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	3 cut(s)	53, 210, 327
Bsp143I	GATC	5 cut(s)	8, 424, 448, 469, 514
BspACI	CCGC	4 cut(s)	19, 119, 347, 405
BspANI	GGCC	3 cut(s)	168, 275, 290
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	324, 462
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	349
BssHII	GCGCGC	1 cut(s)	176
BssMI	GATC	5 cut(s)	8, 424, 448, 469, 514
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	364, 573
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	221, 517
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	178, 180
BstKTI	GATC	5 cut(s)	11, 427, 451, 472, 517
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	5 cut(s)	8, 424, 448, 469, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 214, 248
BstNI	CCWGG	2 cut(s)	364, 573
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	362, 571
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	5 cut(s)	28, 115, 161, 243, 251
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	168, 275, 290
BtsCI	GGATG	2 cut(s)	221, 517
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	2 cut(s)	178, 180
CseI	GACGC	2 cut(s)	19, 134
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	6 cut(s)	160, 211, 271, 343, 428, 467
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	5 cut(s)	10, 426, 450, 471, 516
DpnII	GATC	5 cut(s)	8, 424, 448, 469, 514
EaeI	YGGCCR	1 cut(s)	288
Eco24I	GRGCYC	3 cut(s)	53, 210, 327
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	104, 291
EcoRII	CCWGG	2 cut(s)	362, 571
EcoT38I	GRGCYC	3 cut(s)	53, 210, 327
FaeI	CATG	6 cut(s)	163, 214, 274, 346, 431, 470
FatI	CATG	6 cut(s)	159, 210, 270, 342, 427, 466
FbaI	TGATCA	2 cut(s)	469, 514
Fnu4HI	GCNGC	6 cut(s)	17, 129, 150, 240, 257, 347
FokI	GGATG	2 cut(s)	208, 524
FriOI	GRGCYC	3 cut(s)	53, 210, 327
Fsp4HI	GCNGC	6 cut(s)	17, 129, 150, 240, 257, 347
FspBI	CTAG	2 cut(s)	6, 101
GlaI	GCGC	2 cut(s)	177, 179
GluI	GCNGC	6 cut(s)	17, 129, 150, 240, 257, 347
GsaI	CCCAGC	2 cut(s)	16, 439
HaeIII	GGCC	3 cut(s)	168, 275, 290
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	2 cut(s)	19, 134
HhaI	GCGC	2 cut(s)	178, 180
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	163, 214, 274, 346, 431, 470
Hin6I	GCGC	2 cut(s)	176, 178
HinP1I	GCGC	2 cut(s)	176, 178
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	35, 64
Hpy188III	TCNNGA	3 cut(s)	467, 506, 545
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	315, 363, 382
HpyCH4V	TGCA	5 cut(s)	131, 259, 267, 454, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 214, 248
HpyF3I	CTNAG	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	163, 214, 274, 346, 431, 470
HspAI	GCGC	2 cut(s)	176, 178
Ksp22I	TGATCA	2 cut(s)	469, 514
Kzo9I	GATC	5 cut(s)	8, 424, 448, 469, 514
LmnI	GCTCC	5 cut(s)	322, 354, 407, 432, 538
LpnPI	CCDG	9 cut(s)	26, 349, 376, 379, 385, 421, 440, 473, 558
Lsp1109I	GCAGC	5 cut(s)	28, 115, 161, 243, 251
MaeI	CTAG	2 cut(s)	6, 101
MalI	GATC	5 cut(s)	10, 426, 450, 471, 516
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	5 cut(s)	8, 424, 448, 469, 514
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	53, 210, 327
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	93, 184
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	364, 573
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	364, 573
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 214, 248
NdeII	GATC	5 cut(s)	8, 424, 448, 469, 514
NlaIII	CATG	6 cut(s)	163, 214, 274, 346, 431, 470
NlaIV	GGNNCC	2 cut(s)	324, 462
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	466
PauI	GCGCGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	6 cut(s)	18, 130, 151, 241, 258, 348
Psp6I	CCWGG	2 cut(s)	362, 571
PspFI	CCCAGC	2 cut(s)	12, 435
PspGI	CCWGG	2 cut(s)	362, 571
PspN4I	GGNNCC	2 cut(s)	324, 462
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	8
PteI	GCGCGC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	6 cut(s)	17, 129, 150, 240, 257, 347
Sau3AI	GATC	5 cut(s)	8, 424, 448, 469, 514
ScrFI	CCNGG	2 cut(s)	364, 573
SduI	GDGCHC	3 cut(s)	53, 210, 327
SetI	ASST	7 cut(s)	244, 258, 307, 365, 393, 437, 543
SfcI	CTRYAG	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	93, 184
SsiI	CCGC	4 cut(s)	19, 119, 347, 405
SspMI	CTAG	2 cut(s)	6, 101
StyD4I	CCNGG	2 cut(s)	362, 571
TaqI	TCGA	2 cut(s)	25, 111
TasI	AATT	2 cut(s)	93, 184
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	5 cut(s)	16, 128, 149, 239, 256
TspDTI	ATGAA	2 cut(s)	159, 210
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	93, 184
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	6, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.