Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016889

Physical Location & Seq

Genomic Coordinates Reverse (-)

35668189 .. 35669115

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTAGGTCCCAACAGCGTTATCGCGGAGTCCGACAAAGGCATTGGGGTTCTTGGGTTTCTGAAATTCGGCACCCTTTACTTCTGAACAAGAAACGCGTTTCTTTGGTTTACAGAAAGACAAGAATTTGGCTAGGCACTTTCGAAACGGCGGAGGACGCAGCGCGAGCCTACGACGAAGCGGCGAGACTCATGTGCGGTCCAAAAGCACGTACCAATTTCCCATTCAATCCCAACGACCACATGTCACATTCATCCCAGCTTCTCTCATCGGCTTTGATAGCAAAGCTTCACAAATGCAACATGGCCTCTCTACAAATGACGAAAAAACCAGCCCCAAAAGAGGAGCCAGTGCAACAAGTAGTGCTGCAGCGACAGTATATGCCATCCGTCACTTCTAGTAGTAGCTGCATTGTCGAAAATAGAGGCTTTTCGGGGTTGGATTGGTCGGAGAAGAGGAAGTACGGTGGAGTTCAATGGGGTGAGGGAAATTGGGTTGGTGAGGTGGTTGTTCAAGTTGAGAATCATGATCAACATCAGGAGCTTTTTCAGCCGCTTGAGGAGGATCACATTGAGCAAATGATAGAGGAGTTGCTTGATTATGGGCACATTGAGCTTTGTCCCGGGGTTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

212

Amino Acids

24.4

Weight (kDa)

7.75

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 67	4.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016889)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28880
malus_domestica	MD17G1220600.v1.1
prunus_persica	Prupe.3G096000_v2.0.a1
pyrus_communis	pycom17g22520
rosa_chinensis	RchiOBHm_Chr2g0133451
rosa_laevigata	RLG00000019335
rosa_multiflora	Rmu_sc0006007.1_g000007
rosa_roxburghii	Rroxscaffold_2G00111120
rosa_rugosa	Rorug02G0311800
rosa_samantha	Rh2AG364400 Rh2BG370100 Rh2CG347600 Rh2DG387000
rosa_wichuraiana	Rw2G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	3 cut(s)	27, 99, 166
AciI	CCGC	5 cut(s)	27, 152, 182, 198, 554
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	66, 126
AfaI	GTAC	2 cut(s)	214, 464
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	2 cut(s)	97, 243
AgsI	TTSAA	4 cut(s)	229, 476, 515, 632
AhdI	GACNNNNNGTC	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	262, 289, 408, 544, 616
AluI	AGCT	5 cut(s)	262, 289, 408, 544, 616
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	573
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	4 cut(s)	161, 367, 370, 408
ApoI	RAATTY	2 cut(s)	66, 126
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	9, 200
AsuC2I	CCSGG	2 cut(s)	624, 625
AsuHPI	GGTGA	2 cut(s)	494, 512
AsuII	TTCGAA	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	9, 200
BaeGI	GKGCMC	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbvI	GCAGC	4 cut(s)	173, 354, 382, 395
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	2 cut(s)	624, 625
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	3 cut(s)	6, 134, 399
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	6 cut(s)	162, 183, 368, 371, 409, 554
BlsI	GCNGC	6 cut(s)	163, 184, 369, 372, 410, 555
Bme1390I	CCNGG	2 cut(s)	624, 625
Bme18I	GGWCC	2 cut(s)	9, 200
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	9, 200
BmiI	GGNNCC	3 cut(s)	11, 74, 348
BmrFI	CCNGG	2 cut(s)	624, 625
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	624, 625
BsaAI	YACGTR	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	623, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	623, 624
BseGI	GGATG	2 cut(s)	254, 386
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	3 cut(s)	359, 575, 602
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	4 cut(s)	173, 354, 382, 395
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	3 cut(s)	27, 99, 166
BshFI	GGCC	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	529, 565
BspACI	CCGC	5 cut(s)	27, 152, 182, 198, 554
BspANI	GGCC	1 cut(s)	308
BspFNI	CGCG	3 cut(s)	27, 99, 166
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	11, 74, 348
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	1 cut(s)	573
BspT104I	TTCGAA	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	623, 624
BssMI	GATC	2 cut(s)	529, 565
Bst4CI	ACNGT	2 cut(s)	378, 467
Bst6I	CTCTTC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	254, 386
BstFNI	CGCG	3 cut(s)	27, 99, 166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	532, 568
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	529, 565
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 167, 281, 550, 613
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	622, 623
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	3 cut(s)	27, 99, 166
BstV1I	GCAGC	4 cut(s)	173, 354, 382, 395
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	254, 386
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	9, 200
Cfr9I	CCCGGG	1 cut(s)	623
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	213, 463
CviAII	CATG	4 cut(s)	193, 244, 304, 527
CviQI	GTAC	2 cut(s)	213, 463
DpnI	GATC	2 cut(s)	531, 567
DpnII	GATC	2 cut(s)	529, 565
DriI	GACNNNNNGTC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	449
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	449
EciI	GGCGGA	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	9, 200
Eco88I	CYCGRG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	9
FaeI	CATG	4 cut(s)	196, 247, 307, 530
FaiI	YATR	8 cut(s)	194, 245, 305, 381, 383, 528, 603, 637
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	4 cut(s)	192, 243, 303, 526
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	6 cut(s)	162, 183, 368, 371, 409, 554
FokI	GGATG	2 cut(s)	241, 373
Fsp4HI	GCNGC	6 cut(s)	162, 183, 368, 371, 409, 554
FspBI	CTAG	3 cut(s)	6, 134, 399
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	6 cut(s)	162, 183, 368, 371, 409, 554
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	624
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	196, 247, 307, 530
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	30, 189, 523
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	2 cut(s)	494, 512
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	35, 64, 87, 451
Hpy188III	TCNNGA	2 cut(s)	527, 539
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	378, 467
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	300, 355, 370, 411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 167, 281, 550, 613
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	196, 247, 307, 530
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	529, 565
LmnI	GCTCC	2 cut(s)	346, 541
LpnPI	CCDG	4 cut(s)	272, 345, 363, 524
Lsp1109I	GCAGC	4 cut(s)	173, 354, 382, 395
MaeI	CTAG	3 cut(s)	6, 134, 399
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	246, 391
MalI	GATC	2 cut(s)	531, 567
MboI	GATC	2 cut(s)	529, 565
MboII	GAAGA	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	4 cut(s)	66, 126, 217, 490
MluI	ACGCGT	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	39, 183
MmeI	TCCRAC	3 cut(s)	58, 420, 429
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	2 cut(s)	624, 625
MvnI	CGCG	3 cut(s)	27, 99, 166
MwoI	GCNNNNNNNGC	5 cut(s)	158, 167, 281, 550, 613
NciI	CCSGG	2 cut(s)	624, 625
NdeII	GATC	2 cut(s)	529, 565
NlaIII	CATG	4 cut(s)	196, 247, 307, 530
NlaIV	GGNNCC	3 cut(s)	11, 74, 348
NmuCI	GTSAC	2 cut(s)	246, 391
NspI	RCATGY	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	144
PagI	TCATGA	1 cut(s)	526
PciI	ACATGT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	6 cut(s)	163, 184, 369, 372, 410, 555
PleI	GAGTC	2 cut(s)	38, 183
PpsI	GAGTC	2 cut(s)	38, 183
Ppu21I	YACGTR	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	9
PscI	ACATGT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	11, 74, 348
PspPI	GGNCC	2 cut(s)	9, 200
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	214, 464
RsaNI	GTAC	2 cut(s)	213, 463
SatI	GCNGC	6 cut(s)	162, 183, 368, 371, 409, 554
Sau3AI	GATC	2 cut(s)	529, 565
Sau96I	GGNCC	2 cut(s)	9, 200
SchI	GAGTC	2 cut(s)	39, 183
ScrFI	CCNGG	2 cut(s)	624, 625
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	8 cut(s)	11, 214, 264, 291, 410, 507, 546, 618
SfcI	CTRYAG	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	144
SinI	GGWCC	2 cut(s)	9, 200
SmaI	CCCGGG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	66, 126, 217, 490
SsiI	CCGC	5 cut(s)	27, 152, 182, 198, 554
SspMI	CTAG	3 cut(s)	6, 134, 399
StyD4I	CCNGG	2 cut(s)	622, 623
TaaI	ACNGT	2 cut(s)	378, 467
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	144, 417
TasI	AATT	4 cut(s)	66, 126, 217, 490
TauI	GCSGC	2 cut(s)	185, 556
TfiI	GAWTC	1 cut(s)	523
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	246, 391
TseI	GCWGC	4 cut(s)	161, 367, 370, 408
Tsp45I	GTSAC	2 cut(s)	246, 391
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	379
TspMI	CCCGGG	1 cut(s)	623
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	9, 200
XapI	RAATTY	2 cut(s)	66, 126
XceI	RCATGY	1 cut(s)	247
XmaI	CCCGGG	1 cut(s)	623
XspI	CTAG	3 cut(s)	6, 134, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.