Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005265

Physical Location & Seq

Genomic Coordinates Reverse (-)

23130034 .. 23135137

Gene Structure 5104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29920.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGGTGACGCGGCTGAGCATTGGCTTCATGGGACTCTTCATGCTACGATCTATGAGGTTGATAAGCTACACGGTAGTAGTGGGAATTTCCTCCGGAAGATTACTGGAAAACTTGAAGAGACTGTTGGTCTCGGCAAAGGAGTTAGCAAACTCTATGCAACCGTTGATCTGGAAAGAGCTAGGGTTGGTCGGACCAGAGTTATAGAAAAAGAACCCTCTAATCCCAAGTGGTTTGAGTCTTTCCACATTTATTGTGCCCATGTTGCTGCAAATGTTATATTCACAGTCAAGGAGTCTAATCCTATTGGAGCATCATTAATTGGAAGAGCGTATGTACCTGTTGAACAACTTATTGAAGGGGAAGAAGTGGATACATGGGCTGAAATTTTGGATGACAAAAAAAAACCTGTTCATGGGGAGCCCAAGATACATGTGAAACTACAATTTTTTCATGTTTCAAAGGACCGCAGTTGGGGTCAAGGTATTAAGAGTCCTAAATTTCCTGGAGTTCCATTTACATTTTTCTCTCAGAGACAAGGATGTAGGGTTTCACTGTTCCAAGATGCTCATGTCCCGGATAAATTTATTCCTAAAATTCCTCTTGCTGGAGGGAAGTATTATGAGCCGCACAGATGTTGGGAAGATATCTTTGATGCAATCACTAATGCAAAACACCTGATCTACATTACTGGGTGGTCAGTTTATACTGAAATTTCATTAATAAGGGACTCAAGGAGGCCAAAATCAGGTGGAGATATCACTATTGGTGAGTTACTTAAAAAGAAAGCAAGTGAAGGTGTCCGTGTTCTTATGCTTGTTTGGGATGATAGGACCTCGGTTGGTTTATTAAAAAAAGATGGACTGATGGCCACCCATGATGAGGAAACTGCACAGTTTTTCCAGAACACTGACGTCAACTGTGTCTTATGCCCTCGTAATCCCGATGGTGGTGGAAGCATTGTTCAGGGGGCACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTGGTTGTCGATAGTGAAATGCCAAATGGAGGATCACAGAGTAGAAGAATTGTGAGTTTTGTTGGGGGTCTTGATCTGTGTGATGGAAGATACGATACCCCATTCCATTCACTTTTCAGGACATTGGATACTGCACATCATGATGATTTCCATCAGCCAAATTTTACTGGTGCATCGATTACCAAAGGTGGGCCAAGAGAACCTTGGCATGATATTCACTCTCGGCTGGAAGGGCCTATTGCTTGGGATGTGTTGTTTAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGTAAAGATGTACTTGTTCAGCTCAGAGAGCTTGAGAATGTCATTATTCCACCATCTCCTGTTATGTTCCCAGATGACCATGAGACATGGAATGTACAGTTATTCAGATCAATTGATGGAGGAGCTGCTTTTGGCTTCCCGGATACGCCTGAAGATGCAGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAACATCATTGATCGAAGCATTCAGGATGCTTATATCCATGCTATTCGCCGGGCAAAGAACTTCATATATATTGAAAATCAATATTTTCTTGGTAGCTCTTTTGCCTGGGCAGCTGATGGTATAAAACCTGAAGACATTGGTGCTTCGCATGTAATTCCTAGGGAGCTTTCGCTTAAGATTGCTGACAAGATAGAGAATGGGGAGAGGTTTACTGTCTATGTCGTTGTACCAATGTGGCCAGAGGGAATCCCAGAGTCCGCATCAGTCCAGGCCATATTAGATTGGCAGAGGAGGACAATGGAAATGATGTACAAAGATATTAAGGAGGCACTTGATAAACATGGTGTTGAGGAGGATCCAAGGAACTATTTGACATTTTTCTGCCTTGGAAATCGGGAGGTGAAGAAGGACGGAGAATATGAACCCTCTGAGGCACCTGAGGCAGATTCAGATTATATTAGAGCTCAGGAAGCCCGGCGCTTCATGATTTATGTTCACACCAAAATGATGATAGTCGATGATGAATACATCATCATTGGATCTGCCAACATCAATCAGAGATCAATGGATGGTGCCAGGGACTCTGAAATAGCCATGGGAGCCTACCAACCACATCATCTATCAGTCAGGGAGCCAGCACGTGGCCAGATCCATGGTTTCCGTATGGCATTGTGGTACGAGCACCTTGGCATGCTGGATGAGACCTTCCTCCAGCCAGAAAGCGTTGAATGTATCAAAAAGGTCAACCAGATTGCTGACAAATACTGGGACCTCTATTCAAGTGAAACACTGGAACATGATTTGCCGGGTCACCTGCTTCGCTATCCTGTTGGAGTTACCAGTGAAGGAGAAGTCACAGAGTTGCCAGGATTCGAATTCTTCCCTGACACCAAGGCTCGAGTGCTAGGTGCCAGATCCGACTACCTTCCTCCCATCCTTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0009536 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

811

Amino Acids

91.62

Weight (kDa)

5.71

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	46 - 128	1.2e-08	C2 domain
PLDc	PF00614	329 - 366	1.1e-06	Phospholipase D Active site motif
PLDc_2	PF13091	656 - 690	1.9e-06	PLD-like domain
PLDc	PF00614	658 - 683	3e-08	Phospholipase D Active site motif
PLD_C	PF12357	728 - 799	1.4e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52570 AT1G52570 AT1G52570 AT3G15730
fragaria_vesca	FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920
malus_domestica	MD00G1090900.v1.1 MD17G1209200.v1.1
prunus_persica	Prupe.3G084800_v2.0.a1 Prupe.3G084800_v2.0.a1 Prupe.3G084800_v2.0.a1
pyrus_communis	pycom09g14080
rosa_chinensis	RchiOBHm_Chr2g0135901
rosa_laevigata	RLG00000019489
rosa_multiflora	Rmu_sc0001825.1_g000006 Rmu_sc0007848.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108790
rosa_rugosa	Rorug02G0326700 Rorug02G0326700 Rorug02G0326700
rosa_samantha	Rh2AG378300 Rh2BG384800 Rh2CG364100 Rh2DG401200
rosa_wichuraiana	Rw2G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2307
AatII	GACGTC	1 cut(s)	915
Acc36I	ACCTGC	1 cut(s)	2307
AccB1I	GGYRCC	3 cut(s)	1918, 2057, 2393
AccB7I	CCANNNNNTGG	1 cut(s)	2126
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	4 cut(s)	11, 466, 626, 1743
AclWI	GGATC	6 cut(s)	1048, 1835, 1848, 2032, 2128, 2394
AcoI	YGGCCR	3 cut(s)	867, 1721, 2128
AcsI	RAATTY	8 cut(s)	85, 384, 497, 581, 594, 711, 1168, 2360
AcuI	CTGAAG	2 cut(s)	1467, 1635
AcvI	CACGTG	1 cut(s)	2126
AcyI	GRCGYC	1 cut(s)	912
AfaI	GTAC	6 cut(s)	336, 1308, 1392, 1713, 1796, 2162
AflII	CTTAAG	1 cut(s)	1658
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	7 cut(s)	116, 344, 356, 459, 1559, 2213, 2265
AhdI	GACNNNNNGTC	1 cut(s)	126
AjnI	CCWGG	5 cut(s)	502, 1589, 1752, 2060, 2350
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AloI	GAACNNNNNNTCC	2 cut(s)	945, 977
Alw21I	GWGCWC	2 cut(s)	1951, 2169
Alw26I	GTCTC	5 cut(s)	113, 134, 526, 1373, 2180
AlwI	GGATC	6 cut(s)	1048, 1835, 1848, 2032, 2128, 2394
Ama87I	CYCGRG	1 cut(s)	2382
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	7 cut(s)	737, 867, 1199, 1241, 1721, 1755, 2128
ApeKI	GCWGC	4 cut(s)	266, 1421, 1454, 1595
ApoI	RAATTY	8 cut(s)	85, 384, 497, 581, 594, 711, 1168, 2360
AseI	ATTAAT	2 cut(s)	317, 719
AspA2I	CCTAGG	1 cut(s)	1643
AspLEI	GCGC	1 cut(s)	1965
AspS9I	GGNCC	6 cut(s)	192, 463, 831, 1199, 1241, 2254
AsuC2I	CCSGG	5 cut(s)	575, 1436, 1535, 1960, 2292
AsuHPI	GGTGA	4 cut(s)	17, 779, 1897, 2288
AsuII	TTCGAA	1 cut(s)	2358
AvaI	CYCGRG	1 cut(s)	2382
AvaII	GGWCC	4 cut(s)	192, 463, 831, 2254
AvrII	CCTAGG	1 cut(s)	1643
AxyI	CCTNAGG	1 cut(s)	1923
BaeGI	GKGCMC	2 cut(s)	259, 973
BalI	TGGCCA	3 cut(s)	869, 1723, 2130
BamHI	GGATCC	1 cut(s)	1840
BanI	GGYRCC	3 cut(s)	1918, 2057, 2393
BanII	GRGCYC	2 cut(s)	423, 1951
BarI	GAAGNNNNNNTAC	2 cut(s)	1087, 1119
BbrPI	CACGTG	1 cut(s)	2126
BbsI	GAAGAC	1 cut(s)	1623
Bbv12I	GWGCWC	2 cut(s)	1951, 2169
BbvI	GCAGC	4 cut(s)	253, 1408, 1466, 1607
BciT130I	CCWGG	5 cut(s)	504, 1591, 1754, 2062, 2352
BciVI	GTATCC	3 cut(s)	364, 1129, 1432
BcnI	CCSGG	5 cut(s)	575, 1436, 1535, 1960, 2292
BcoDI	GTCTC	5 cut(s)	113, 134, 526, 1373, 2180
BfaI	CTAG	3 cut(s)	180, 1644, 2390
BfoI	RGCGCY	1 cut(s)	1966
BfrI	CTTAAG	1 cut(s)	1658
BfuAI	ACCTGC	1 cut(s)	2307
BfuI	GTATCC	3 cut(s)	364, 1129, 1432
BisI	GCNGC	6 cut(s)	12, 267, 626, 1422, 1455, 1596
BlnI	CCTAGG	1 cut(s)	1643
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	6 cut(s)	13, 268, 627, 1423, 1456, 1597
Bme18I	GGWCC	4 cut(s)	192, 463, 831, 2254
BmeRI	GACNNNNNGTC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	2382
BmgT120I	GGNCC	6 cut(s)	192, 463, 831, 1199, 1241, 2254
BmiI	GGNNCC	8 cut(s)	420, 1842, 1920, 2059, 2086, 2118, 2255, 2395
BmrI	ACTGGG	2 cut(s)	699, 2260
BmsI	GCATC	7 cut(s)	320, 553, 643, 1190, 1441, 1501, 1754
BmuI	ACTGGG	2 cut(s)	699, 2260
BpiI	GAAGAC	1 cut(s)	1623
BpmI	CTGGAG	3 cut(s)	525, 627, 2180
Bpu10I	CCTNAGC	1 cut(s)	1950
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	2358
BpuEI	CTTGAG	2 cut(s)	715, 1349
BpuMI	CCSGG	5 cut(s)	575, 1436, 1535, 1960, 2292
Bsa29I	ATCGAT	1 cut(s)	1184
BsaAI	YACGTR	1 cut(s)	2126
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaHI	GRCGYC	1 cut(s)	912
BsaI	GGTCTC	2 cut(s)	134, 2180
BsaWI	WCCGGW	1 cut(s)	93
Bse1I	ACTGG	6 cut(s)	109, 694, 1180, 2255, 2280, 2325
Bse21I	CCTNAGG	1 cut(s)	1923
Bse8I	GATNNNNATC	1 cut(s)	1158
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	5 cut(s)	504, 1591, 1754, 2062, 2352
BseCI	ATCGAT	1 cut(s)	1184
BseGI	GGATG	8 cut(s)	397, 545, 829, 1261, 1516, 2059, 2188, 2418
BseJI	GATNNNNATC	1 cut(s)	1158
BseMII	CTCAG	6 cut(s)	6, 542, 1333, 1905, 1914, 1964
BseNI	ACTGG	6 cut(s)	109, 694, 1180, 2255, 2280, 2325
BseRI	GAGGAG	3 cut(s)	1431, 1789, 1850
BseSI	GKGCMC	2 cut(s)	259, 973
BseXI	GCAGC	4 cut(s)	253, 1408, 1466, 1607
BseYI	CCCAGC	1 cut(s)	1463
BsgI	GTGCAG	2 cut(s)	873, 1125
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	7 cut(s)	739, 869, 1201, 1243, 1723, 1757, 2130
BshNI	GGYRCC	3 cut(s)	1918, 2057, 2393
BshVI	ATCGAT	1 cut(s)	1184
BsiHKAI	GWGCWC	2 cut(s)	1951, 2169
BsiHKCI	CYCGRG	1 cut(s)	2382
BsiSI	CCGG	6 cut(s)	94, 575, 1436, 1534, 1960, 2291
BslFI	GGGAC	5 cut(s)	46, 557, 740, 2078, 2267
BsmAI	GTCTC	5 cut(s)	113, 134, 526, 1373, 2180
BsmFI	GGGAC	5 cut(s)	46, 557, 740, 2078, 2267
BsmI	GAATGC	1 cut(s)	1503
BsnI	GGCC	7 cut(s)	739, 869, 1201, 1243, 1723, 1757, 2130
Bso31I	GGTCTC	2 cut(s)	134, 2180
BsoBI	CYCGRG	1 cut(s)	2382
Bsp119I	TTCGAA	1 cut(s)	2358
Bsp1286I	GDGCHC	5 cut(s)	259, 423, 973, 1951, 2169
Bsp13I	TCCGGA	1 cut(s)	93
Bsp1407I	TGTACA	2 cut(s)	1390, 1794
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	2 cut(s)	2079, 2137
BspACI	CCGC	4 cut(s)	11, 466, 626, 1743
BspANI	GGCC	7 cut(s)	739, 869, 1201, 1243, 1723, 1757, 2130
BspCNI	CTCAG	6 cut(s)	7, 541, 1332, 1906, 1915, 1963
BspDI	ATCGAT	1 cut(s)	1184
BspEI	TCCGGA	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	2 cut(s)	1147, 1968
BspLI	GGNNCC	8 cut(s)	420, 1842, 1920, 2059, 2086, 2118, 2255, 2395
BspMI	ACCTGC	1 cut(s)	2307
BspPI	GGATC	6 cut(s)	1048, 1835, 1848, 2032, 2128, 2394
BspQI	GCTCTTC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	2358
BspT107I	GGYRCC	3 cut(s)	1918, 2057, 2393
BspTI	CTTAAG	1 cut(s)	1658
BspTNI	GGTCTC	2 cut(s)	134, 2180
BsrGI	TGTACA	2 cut(s)	1390, 1794
BsrI	ACTGG	6 cut(s)	109, 694, 1180, 2255, 2280, 2325
BssNI	GRCGYC	1 cut(s)	912
BssT1I	CCWWGG	8 cut(s)	1211, 1643, 1844, 1870, 2079, 2137, 2170, 2376
Bst2UI	CCWGG	5 cut(s)	504, 1591, 1754, 2062, 2352
Bst4CI	ACNGT	9 cut(s)	74, 124, 163, 286, 555, 894, 920, 1395, 1699
Bst6I	CTCTTC	3 cut(s)	42, 111, 319
BstACI	GRCGYC	1 cut(s)	912
BstAFI	CTTAAG	1 cut(s)	1658
BstAUI	TGTACA	2 cut(s)	1390, 1794
BstBAI	YACGTR	1 cut(s)	2126
BstBI	TTCGAA	1 cut(s)	2358
BstC8I	GCNNGC	2 cut(s)	2121, 2177
BstDEI	CTNAG	6 cut(s)	15, 528, 1319, 1914, 1923, 1950
BstDSI	CCRYGG	2 cut(s)	2079, 2137
BstEII	GGTNACC	1 cut(s)	2294
BstF5I	GGATG	8 cut(s)	397, 545, 829, 1261, 1516, 2059, 2188, 2418
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	1966
BstHHI	GCGC	1 cut(s)	1965
BstMAI	GTCTC	5 cut(s)	113, 134, 526, 1373, 2180
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 1240, 1324, 1460, 1595, 1925, 1955, 2084
BstNI	CCWGG	5 cut(s)	504, 1591, 1754, 2062, 2352
BstNSI	RCATGY	3 cut(s)	434, 1637, 2179
BstPI	GGTNACC	1 cut(s)	2294
BstSLI	GKGCMC	2 cut(s)	259, 973
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	253, 1408, 1466, 1607
BstV2I	GAAGAC	1 cut(s)	1623
BstX2I	RGATCY	4 cut(s)	1840, 2024, 2133, 2399
BstXI	CCANNNNNNTGG	1 cut(s)	2138
BstYI	RGATCY	4 cut(s)	1840, 2024, 2133, 2399
Bsu15I	ATCGAT	1 cut(s)	1184
Bsu36I	CCTNAGG	1 cut(s)	1923
BsuI	GTATCC	3 cut(s)	364, 1129, 1432
BsuRI	GGCC	7 cut(s)	739, 869, 1201, 1243, 1723, 1757, 2130
BsuTUI	ATCGAT	1 cut(s)	1184
BtgI	CCRYGG	2 cut(s)	2079, 2137
BtsCI	GGATG	8 cut(s)	397, 545, 829, 1261, 1516, 2059, 2188, 2418
BtsIMutI	CAGTG	4 cut(s)	551, 906, 2273, 2332
BveI	ACCTGC	1 cut(s)	2307
Cac8I	GCNNGC	2 cut(s)	2121, 2177
CciI	TCATGA	2 cut(s)	1147, 1968
CfoI	GCGC	1 cut(s)	1965
Cfr13I	GGNCC	6 cut(s)	192, 463, 831, 1199, 1241, 2254
ClaI	ATCGAT	1 cut(s)	1184
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	6 cut(s)	335, 1307, 1391, 1712, 1795, 2161
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviQI	GTAC	6 cut(s)	335, 1307, 1391, 1712, 1795, 2161
DdeI	CTNAG	6 cut(s)	15, 528, 1319, 1914, 1923, 1950
DriI	GACNNNNNGTC	1 cut(s)	126
EaeI	YGGCCR	3 cut(s)	867, 1721, 2128
Eam1104I	CTCTTC	3 cut(s)	42, 111, 319
Eam1105I	GACNNNNNGTC	1 cut(s)	126
EarI	CTCTTC	3 cut(s)	42, 111, 319
Ecl136II	GAGCTC	1 cut(s)	1949
Eco130I	CCWWGG	8 cut(s)	1211, 1643, 1844, 1870, 2079, 2137, 2170, 2376
Eco24I	GRGCYC	2 cut(s)	423, 1951
Eco31I	GGTCTC	2 cut(s)	134, 2180
Eco32I	GATATC	2 cut(s)	646, 757
Eco47I	GGWCC	4 cut(s)	192, 463, 831, 2254
Eco53kI	GAGCTC	1 cut(s)	1949
Eco57I	CTGAAG	2 cut(s)	1467, 1635
Eco72I	CACGTG	1 cut(s)	2126
Eco81I	CCTNAGG	1 cut(s)	1923
Eco88I	CYCGRG	1 cut(s)	2382
Eco91I	GGTNACC	1 cut(s)	2294
EcoICRI	GAGCTC	1 cut(s)	1949
EcoO109I	RGGNCCY	3 cut(s)	831, 1241, 2254
EcoO65I	GGTNACC	1 cut(s)	2294
EcoRI	GAATTC	1 cut(s)	2360
EcoRII	CCWGG	5 cut(s)	502, 1589, 1752, 2060, 2350
EcoRV	GATATC	2 cut(s)	646, 757
EcoT14I	CCWWGG	8 cut(s)	1211, 1643, 1844, 1870, 2079, 2137, 2170, 2376
EcoT38I	GRGCYC	2 cut(s)	423, 1951
ErhI	CCWWGG	8 cut(s)	1211, 1643, 1844, 1870, 2079, 2137, 2170, 2376
FalI	AAGNNNNNCTT	4 cut(s)	1195, 1227, 1293, 1325
FaqI	GGGAC	5 cut(s)	46, 557, 740, 2078, 2267
Fnu4HI	GCNGC	6 cut(s)	12, 267, 626, 1422, 1455, 1596
FokI	GGATG	8 cut(s)	404, 552, 836, 1268, 1523, 2066, 2195, 2405
FriOI	GRGCYC	2 cut(s)	423, 1951
Fsp4HI	GCNGC	6 cut(s)	12, 267, 626, 1422, 1455, 1596
FspBI	CTAG	3 cut(s)	180, 1644, 2390
GlaI	GCGC	1 cut(s)	1964
GluI	GCNGC	6 cut(s)	12, 267, 626, 1422, 1455, 1596
GsaI	CCCAGC	1 cut(s)	1467
GsuI	CTGGAG	3 cut(s)	525, 627, 2180
HaeII	RGCGCY	1 cut(s)	1966
HaeIII	GGCC	7 cut(s)	739, 869, 1201, 1243, 1723, 1757, 2130
HapII	CCGG	6 cut(s)	94, 575, 1436, 1534, 1960, 2291
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	1965
Hin1I	GRCGYC	1 cut(s)	912
Hin6I	GCGC	1 cut(s)	1963
HinP1I	GCGC	1 cut(s)	1963
HincII	GTYRAC	2 cut(s)	916, 2230
HindII	GTYRAC	2 cut(s)	916, 2230
HpaII	CCGG	6 cut(s)	94, 575, 1436, 1534, 1960, 2291
HphI	GGTGA	4 cut(s)	17, 779, 1897, 2288
Hpy166II	GTNNAC	5 cut(s)	916, 990, 1695, 1981, 2230
Hpy8I	GTNNAC	5 cut(s)	916, 990, 1695, 1981, 2230
HpyAV	CCTTC	8 cut(s)	350, 788, 1232, 1474, 1885, 2200, 2324, 2420
HpyCH4III	ACNGT	9 cut(s)	74, 124, 163, 286, 555, 894, 920, 1395, 1699
HpyCH4IV	ACGT	2 cut(s)	912, 2125
HpyCH4V	TGCA	8 cut(s)	158, 269, 656, 668, 890, 1142, 1181, 1454
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 1240, 1324, 1460, 1595, 1925, 1955, 2084
HpyF3I	CTNAG	6 cut(s)	15, 528, 1319, 1914, 1923, 1950
HpySE526I	ACGT	2 cut(s)	912, 2125
Hsp92I	GRCGYC	1 cut(s)	912
HspAI	GCGC	1 cut(s)	1963
Kpn2I	TCCGGA	1 cut(s)	93
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	6 cut(s)	308, 418, 1418, 1648, 2084, 2116
Lsp1109I	GCAGC	4 cut(s)	253, 1408, 1466, 1607
LweI	GCATC	7 cut(s)	320, 553, 643, 1190, 1441, 1501, 1754
MaeI	CTAG	3 cut(s)	180, 1644, 2390
MaeII	ACGT	2 cut(s)	912, 2125
MaeIII	GTNAC	5 cut(s)	5, 771, 2294, 2320, 2338
MfeI	CAATTG	1 cut(s)	1407
MflI	RGATCY	4 cut(s)	1840, 2024, 2133, 2399
MhlI	GDGCHC	5 cut(s)	259, 423, 973, 1951, 2169
MlsI	TGGCCA	3 cut(s)	869, 1723, 2130
MluNI	TGGCCA	3 cut(s)	869, 1723, 2130
MlyI	GAGTC	7 cut(s)	28, 245, 302, 499, 722, 1748, 2060
MmeI	TCCRAC	3 cut(s)	170, 2296, 2427
Mox20I	TGGCCA	3 cut(s)	869, 1723, 2130
MroI	TCCGGA	1 cut(s)	93
MscI	TGGCCA	3 cut(s)	869, 1723, 2130
MseI	TTAA	8 cut(s)	317, 486, 719, 777, 848, 1266, 1659, 1806
MslI	CAYNNNNRTG	2 cut(s)	1149, 1988
Msp20I	TGGCCA	3 cut(s)	869, 1723, 2130
MspA1I	CMGCKG	1 cut(s)	1598
MspCI	CTTAAG	1 cut(s)	1658
MspI	CCGG	6 cut(s)	94, 575, 1436, 1534, 1960, 2291
MunI	CAATTG	1 cut(s)	1407
Mva1269I	GAATGC	1 cut(s)	1503
MvaI	CCWGG	5 cut(s)	504, 1591, 1754, 2062, 2352
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	8 cut(s)	263, 1240, 1324, 1460, 1595, 1925, 1955, 2084
NciI	CCSGG	5 cut(s)	575, 1436, 1535, 1960, 2292
NcoI	CCATGG	2 cut(s)	2079, 2137
NlaIV	GGNNCC	8 cut(s)	420, 1842, 1920, 2059, 2086, 2118, 2255, 2395
NmeAIII	GCCGAG	2 cut(s)	111, 1210
NmuCI	GTSAC	3 cut(s)	5, 2294, 2338
NspI	RCATGY	3 cut(s)	434, 1637, 2179
NspV	TTCGAA	1 cut(s)	2358
PaeI	GCATGC	1 cut(s)	2179
PaeR7I	CTCGAG	1 cut(s)	2382
PagI	TCATGA	2 cut(s)	1147, 1968
PaqCI	CACCTGC	1 cut(s)	2307
PciI	ACATGT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	319
PctI	GAATGC	1 cut(s)	1503
PfeI	GAWTC	3 cut(s)	1731, 1931, 2355
PflMI	CCANNNNNTGG	1 cut(s)	2126
PfoI	TCCNGGA	3 cut(s)	502, 573, 1434
PkrI	GCNGC	6 cut(s)	13, 268, 627, 1423, 1456, 1597
PleI	GAGTC	7 cut(s)	28, 244, 301, 498, 722, 1747, 2060
PmaCI	CACGTG	1 cut(s)	2126
PmlI	CACGTG	1 cut(s)	2126
PpsI	GAGTC	7 cut(s)	28, 244, 301, 498, 722, 1747, 2060
Ppu21I	YACGTR	1 cut(s)	2126
PpuMI	RGGWCCY	2 cut(s)	831, 2254
PscI	ACATGT	1 cut(s)	430
PshBI	ATTAAT	2 cut(s)	317, 719
Psp124BI	GAGCTC	1 cut(s)	1951
Psp5II	RGGWCCY	2 cut(s)	831, 2254
Psp6I	CCWGG	5 cut(s)	502, 1589, 1752, 2060, 2350
PspCI	CACGTG	1 cut(s)	2126
PspEI	GGTNACC	1 cut(s)	2294
PspFI	CCCAGC	1 cut(s)	1463
PspGI	CCWGG	5 cut(s)	502, 1589, 1752, 2060, 2350
PspN4I	GGNNCC	8 cut(s)	420, 1842, 1920, 2059, 2086, 2118, 2255, 2395
PspPI	GGNCC	6 cut(s)	192, 463, 831, 1199, 1241, 2254
PspPPI	RGGWCCY	2 cut(s)	831, 2254
PspXI	VCTCGAGB	1 cut(s)	2382
PsuI	RGATCY	4 cut(s)	1840, 2024, 2133, 2399
PvuII	CAGCTG	1 cut(s)	1598
RsaI	GTAC	6 cut(s)	336, 1308, 1392, 1713, 1796, 2162
RsaNI	GTAC	6 cut(s)	335, 1307, 1391, 1712, 1795, 2161
RseI	CAYNNNNRTG	2 cut(s)	1149, 1988
SacI	GAGCTC	1 cut(s)	1951
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	8 cut(s)	317, 486, 719, 777, 848, 1266, 1659, 1806
SatI	GCNGC	6 cut(s)	12, 267, 626, 1422, 1455, 1596
Sau96I	GGNCC	6 cut(s)	192, 463, 831, 1199, 1241, 2254
SchI	GAGTC	7 cut(s)	28, 245, 302, 499, 722, 1748, 2060
SduI	GDGCHC	5 cut(s)	259, 423, 973, 1951, 2169
SfaNI	GCATC	7 cut(s)	320, 553, 643, 1190, 1441, 1501, 1754
Sfr274I	CTCGAG	1 cut(s)	2382
SfuI	TTCGAA	1 cut(s)	2358
SinI	GGWCC	4 cut(s)	192, 463, 831, 2254
SlaI	CTCGAG	1 cut(s)	2382
SmiMI	CAYNNNNRTG	2 cut(s)	1149, 1988
SmlI	CTYRAG	4 cut(s)	730, 1328, 1658, 2382
SmoI	CTYRAG	4 cut(s)	730, 1328, 1658, 2382
SphI	GCATGC	1 cut(s)	2179
SsiI	CCGC	4 cut(s)	11, 466, 626, 1743
SspI	AATATT	1 cut(s)	1568
SspMI	CTAG	3 cut(s)	180, 1644, 2390
SstI	GAGCTC	1 cut(s)	1951
StyI	CCWWGG	8 cut(s)	1211, 1643, 1844, 1870, 2079, 2137, 2170, 2376
TaaI	ACNGT	9 cut(s)	74, 124, 163, 286, 555, 894, 920, 1395, 1699
TaiI	ACGT	2 cut(s)	915, 2128
TaqI	TCGA	6 cut(s)	1017, 1184, 1498, 2001, 2358, 2383
TatI	WGTACW	3 cut(s)	1306, 1390, 1794
TauI	GCSGC	2 cut(s)	14, 628
TfiI	GAWTC	3 cut(s)	1731, 1931, 2355
Tru1I	TTAA	8 cut(s)	317, 486, 719, 777, 848, 1266, 1659, 1806
Tru9I	TTAA	8 cut(s)	317, 486, 719, 777, 848, 1266, 1659, 1806
TscAI	CASTG	4 cut(s)	558, 913, 2280, 2332
TseFI	GTSAC	3 cut(s)	5, 2294, 2338
TseI	GCWGC	4 cut(s)	266, 1421, 1454, 1595
Tsp45I	GTSAC	3 cut(s)	5, 2294, 2338
TspDTI	ATGAA	9 cut(s)	17, 29, 401, 440, 705, 1537, 1920, 1957, 2022
TspGWI	ACGGA	3 cut(s)	791, 1911, 2135
TspRI	CASTG	4 cut(s)	558, 913, 2280, 2332
Van91I	CCANNNNNTGG	1 cut(s)	2126
Vha464I	CTTAAG	1 cut(s)	1658
VpaK11BI	GGWCC	4 cut(s)	192, 463, 831, 2254
VspI	ATTAAT	2 cut(s)	317, 719
XapI	RAATTY	8 cut(s)	85, 384, 497, 581, 594, 711, 1168, 2360
XceI	RCATGY	3 cut(s)	434, 1637, 2179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1209
XhoI	CTCGAG	1 cut(s)	2382
XmaJI	CCTAGG	1 cut(s)	1643
XspI	CTAG	3 cut(s)	180, 1644, 2390
ZraI	GACGTC	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.