Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005265

Physical Location & Seq

Genomic Coordinates Reverse (-)

54570280 .. 54576009

Gene Structure 5730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG384800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGGTGACGCCGAGCATTGGCTACATGGGACGCTTCATGCTACGATCTATGAGGTTGATAAGCTGCACAGTAGCAGTGGAAATTTCCTCCGCAAGATCACTGGAAAACTTGAAGAGACTGTTGGTATTGGCAAAGGAATGAGTAAACTGTATGCAACTGTTGATCTGGAAAGGGCTAGGGTTGGTCGCACCAGAGTTGTAGGAGAACCCTCCAATCCCAAGTGGTTTGAGTCTTTCCACATTTATTGTGCTCATGTCGCTGCAAATGTTATATTCACTGTCAAGGAGTCTAATCCTATTGGAGCATCATTAATTGGTAGAGCGTATGTACCTGTTGAACAACTTTTTGAAGGGGAAGAAGTGGATACATGGGCTGAAATTTTGGATGAGAAAAAAGAACCTGTTCATGGCAGTCCCAAGATACATGTGAAGCTGCAATTTTTTCATGTTTCAAAGGACCGCAGCTGGAGTCAAGGTATTAAGAGTCCTAAATTTCCTGGAGTTCCATTTACCTTTTTCTCACAGAGACAAGGATGTAAGGTTACACTGTACCAAGATGCTCATGTCCCAGATAACTTTATTCCTAAAATTCCTCTTGCTGGAGGCAAGAATTATGAGCCCCACAGATGTTGGGAAGATATCTTTGATGCAATTACTAATGCAAAACACCTGATCTACATCACTGGGTGGTCAGTTTATACTGAAATTTCCTTGGTAAGGGACTCAAGGAGGTCAAAACCTGGTGGCGATATCACTATTGGTGAGTTACTTAAAAAGAAAGCAAGTGAAGGTGTCCGTGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTTCCTTTATTAAAAAAAGATGGAATGATGGCCACCCATGATGAGGCAACTGCACAGTATTTCCAGAACACTGACGTGAACTGTGTCTTATGCCCCCGTAACCCAGATGGTGGTGGAAGCATTGTTCAGGGGGCACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTGGTTGTGGACAGTGAAATGCCAACTAGAGGATCACAGAGTAGAAGAATTGTGAGTTTTGTTGGGGGTATTGATCTGTGTGATGGAAGATATGATACCCAATTCCATTCACTTTTCAGGACATTGGATACTGCACATCATGACGATTTCCATCAGCCAAATTTTACTGGTGCATCGATTACAAAAGGTGGTCCAAGAGAACCTTGGCATGATATTCACTCTCGGCTGGAAGGGCCTATTGCTTGGGATGTGTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGTAAAGATGTACTTGTTCAGCTCAGAGAGCTTGACAATGTCATTATTCCACCATCTCCTGTTATGTTCCCAGATGACCATGAGACATGGAATGTTCAGTTATTCAGATCAATTGATGGAGGAGCTGCTTTTGGCTTCCCGGATACGCCTGAAGATGCAGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAACATCATTGATCGAAGCATTCAGGATGCTTATATCCATGCTATTCGCCGTGCAAAGAACTTCATATATATTGAGAATCAGTATTTTCTTGGTAGCTCTTTTGCCTGGGCAGCTGATGGTATAAAGCCCGAAGACATTGGTGCTTTGCATGTAATTCCTAGGGAGCTTTCGCTTAAGATTGCTGACAAGATTGCGAATGGGGAGAGGTTTACTGTCTATGTTGTTGTCCCAATGTGGCCAGAGGGAATCCCGGAGTCTGGACCAGTTCAGGCAATATTAGATTGGCAGAGGAGGACAATGCAAATGATGTACACAGATATTAAGCAGGCACTTGATAAAAACGGTGTTGAGGAGGATCCAAGGAACTATTTGACATTTTTCTGCCTTGGGAATCGGGAGGTGAAGAAGGATGGAGAATATGAACCCACCGAGCGACCAGAGGCAGATTCGGATTATATTAGAGCTCAGGAATCCCGACGCTTCATGATTTATGTTCATACCAAGATGATGATAGTTGACGACGAATACATCATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTCTGAAATAGCCATGGGAGCCTTCCAACCATATCATCTATCAGTCAGGGAGCCAGCACGTGGTCAGATTCATGGTTTCCGTATGGCATTGTGGTACGAGCACCTTGGCATGCTTGATGAATCCTTCCTCCAGCCAGAAAGCATTGAATGTATCACAAAGGTTAACCAGATTGCTGAAAAATACTGGGACCTCTATTCAAGTGAAACACTGGAACGTGATTTGCCGGGTCACCTGCTTCGCTATCCTGTTGGAGTTACCAGCGAAGGAGAAGTCACGGAGTTGCCCGGATTTGAATTCTTCCCTGACACCAAGGCTCGAGTGCTAGGTGCCAAATCAGACTATCTTCCTCCCATCATTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0009536 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

808

Amino Acids

91.49

Weight (kDa)

5.75

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	45 - 126	7.5e-09	C2 domain
PLDc	PF00614	327 - 364	1.5e-06	Phospholipase D Active site motif
PLDc_2	PF13091	654 - 687	3.4e-06	PLD-like domain
PLDc	PF00614	656 - 681	3e-08	Phospholipase D Active site motif
PLD_C	PF12357	726 - 798	5.3e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52570 AT1G52570 AT1G52570 AT3G15730
fragaria_vesca	FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920 FvH4_6g29920
malus_domestica	MD00G1090900.v1.1 MD17G1209200.v1.1
prunus_persica	Prupe.3G084800_v2.0.a1 Prupe.3G084800_v2.0.a1 Prupe.3G084800_v2.0.a1
pyrus_communis	pycom09g14080
rosa_chinensis	RchiOBHm_Chr2g0135901
rosa_laevigata	RLG00000019489
rosa_multiflora	Rmu_sc0001825.1_g000006 Rmu_sc0007848.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108790
rosa_rugosa	Rorug02G0326700 Rorug02G0326700 Rorug02G0326700
rosa_samantha	Rh2AG378300 Rh2BG384800 Rh2CG364100 Rh2DG401200
rosa_wichuraiana	Rw2G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2301
Acc36I	ACCTGC	1 cut(s)	2301
AccB1I	GGYRCC	2 cut(s)	2051, 2387
AccB7I	CCANNNNNTGG	2 cut(s)	941, 2120
AciI	CCGC	2 cut(s)	91, 460
AclWI	GGATC	4 cut(s)	1042, 1829, 1842, 2026
AcoI	YGGCCR	2 cut(s)	861, 1715
AcsI	RAATTY	7 cut(s)	82, 378, 491, 588, 705, 1162, 2354
AcuI	CTGAAG	1 cut(s)	1461
AcvI	CACGTG	1 cut(s)	2120
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	5 cut(s)	330, 551, 1302, 1790, 2156
AflII	CTTAAG	1 cut(s)	1652
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	8 cut(s)	113, 338, 350, 453, 1261, 2207, 2259, 2354
AjiI	CACGTC	1 cut(s)	907
AjnI	CCWGG	4 cut(s)	496, 739, 1583, 2054
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AleI	CACNNNNGTG	1 cut(s)	905
AloI	GAACNNNNNNTCC	6 cut(s)	817, 849, 939, 971, 1241, 1273
Alw21I	GWGCWC	3 cut(s)	253, 1945, 2163
Alw26I	GTCTC	3 cut(s)	110, 520, 1367
AlwI	GGATC	4 cut(s)	1042, 1829, 1842, 2026
Ama87I	CYCGRG	1 cut(s)	2376
AoxI	GGCC	3 cut(s)	861, 1235, 1715
ApeKI	GCWGC	7 cut(s)	64, 260, 433, 462, 1415, 1448, 1589
ApoI	RAATTY	7 cut(s)	82, 378, 491, 588, 705, 1162, 2354
ArsI	GACNNNNNNTTYG	2 cut(s)	2316, 2348
AseI	ATTAAT	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	402
AspA2I	CCTAGG	1 cut(s)	1637
AspS9I	GGNCC	5 cut(s)	457, 1193, 1235, 1739, 2248
AsuC2I	CCSGG	4 cut(s)	1430, 1730, 2286, 2346
AsuHPI	GGTGA	4 cut(s)	17, 773, 1891, 2282
AvaI	CYCGRG	1 cut(s)	2376
AvaII	GGWCC	4 cut(s)	457, 1193, 1739, 2248
AvrII	CCTAGG	1 cut(s)	1637
BaeGI	GKGCMC	1 cut(s)	967
BalI	TGGCCA	2 cut(s)	863, 1717
BamHI	GGATCC	1 cut(s)	1834
BanI	GGYRCC	2 cut(s)	2051, 2387
BanII	GRGCYC	2 cut(s)	621, 1945
BarI	GAAGNNNNNNTAC	2 cut(s)	1081, 1113
BbrPI	CACGTG	1 cut(s)	2120
BbsI	GAAGAC	1 cut(s)	1617
Bbv12I	GWGCWC	3 cut(s)	253, 1945, 2163
BbvI	GCAGC	7 cut(s)	51, 247, 420, 474, 1402, 1460, 1601
BceAI	ACGGC	1 cut(s)	1512
BciT130I	CCWGG	4 cut(s)	498, 741, 1585, 2056
BciVI	GTATCC	3 cut(s)	358, 1123, 1426
BcnI	CCSGG	4 cut(s)	1430, 1730, 2286, 2346
BcoDI	GTCTC	3 cut(s)	110, 520, 1367
BfaI	CTAG	4 cut(s)	177, 1029, 1638, 2384
BfrI	CTTAAG	1 cut(s)	1652
BfuAI	ACCTGC	1 cut(s)	2301
BfuI	GTATCC	3 cut(s)	358, 1123, 1426
BisI	GCNGC	7 cut(s)	65, 261, 434, 463, 1416, 1449, 1590
BlnI	CCTAGG	1 cut(s)	1637
BlsI	GCNGC	7 cut(s)	66, 262, 435, 464, 1417, 1450, 1591
Bme1390I	CCNGG	8 cut(s)	498, 741, 1430, 1585, 1730, 2056, 2286, 2346
Bme18I	GGWCC	4 cut(s)	457, 1193, 1739, 2248
BmeT110I	CYCGRG	1 cut(s)	2376
BmgBI	CACGTC	1 cut(s)	907
BmgT120I	GGNCC	5 cut(s)	457, 1193, 1235, 1739, 2248
BmiI	GGNNCC	6 cut(s)	1836, 2053, 2080, 2112, 2249, 2389
BmrFI	CCNGG	8 cut(s)	498, 741, 1430, 1585, 1730, 2056, 2286, 2346
BmrI	ACTGGG	2 cut(s)	693, 2254
BmsI	GCATC	6 cut(s)	314, 547, 637, 1184, 1435, 1495
BmuI	ACTGGG	2 cut(s)	693, 2254
BpiI	GAAGAC	1 cut(s)	1617
BpmI	CTGGAG	4 cut(s)	487, 519, 621, 2174
Bpu10I	CCTNAGC	1 cut(s)	1944
BpuEI	CTTGAG	1 cut(s)	709
BpuMI	CCSGG	4 cut(s)	1430, 1730, 2286, 2346
Bsa29I	ATCGAT	1 cut(s)	1178
BsaAI	YACGTR	1 cut(s)	2120
BsaBI	GATNNNNATC	2 cut(s)	677, 1152
BsaHI	GRCGYC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bse1I	ACTGG	6 cut(s)	106, 688, 1174, 1742, 2249, 2274
Bse8I	GATNNNNATC	2 cut(s)	677, 1152
BseBI	CCWGG	4 cut(s)	498, 741, 1585, 2056
BseCI	ATCGAT	1 cut(s)	1178
BseGI	GGATG	7 cut(s)	391, 539, 823, 1255, 1510, 1894, 2053
BseJI	GATNNNNATC	2 cut(s)	677, 1152
BseMII	CTCAG	2 cut(s)	1327, 1958
BseNI	ACTGG	6 cut(s)	106, 688, 1174, 1742, 2249, 2274
BseRI	GAGGAG	3 cut(s)	1425, 1783, 1844
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	7 cut(s)	51, 247, 420, 474, 1402, 1460, 1601
BseYI	CCCAGC	1 cut(s)	1457
BsgI	GTGCAG	3 cut(s)	50, 867, 1119
BshFI	GGCC	3 cut(s)	863, 1237, 1717
BshNI	GGYRCC	2 cut(s)	2051, 2387
BshVI	ATCGAT	1 cut(s)	1178
BsiHKAI	GWGCWC	3 cut(s)	253, 1945, 2163
BsiHKCI	CYCGRG	1 cut(s)	2376
BsiSI	CCGG	4 cut(s)	1430, 1730, 2285, 2346
BslFI	GGGAC	7 cut(s)	43, 399, 551, 734, 1691, 2072, 2261
BsmAI	GTCTC	3 cut(s)	110, 520, 1367
BsmFI	GGGAC	7 cut(s)	43, 399, 551, 734, 1691, 2072, 2261
BsmI	GAATGC	1 cut(s)	1497
BsnI	GGCC	3 cut(s)	863, 1237, 1717
BsoBI	CYCGRG	1 cut(s)	2376
Bsp1286I	GDGCHC	5 cut(s)	253, 621, 967, 1945, 2163
Bsp1407I	TGTACA	1 cut(s)	1788
Bsp19I	CCATGG	1 cut(s)	2073
BspACI	CCGC	2 cut(s)	91, 460
BspANI	GGCC	3 cut(s)	863, 1237, 1717
BspCNI	CTCAG	2 cut(s)	1326, 1957
BspDI	ATCGAT	1 cut(s)	1178
BspHI	TCATGA	2 cut(s)	1141, 1962
BspLI	GGNNCC	6 cut(s)	1836, 2053, 2080, 2112, 2249, 2389
BspMI	ACCTGC	1 cut(s)	2301
BspPI	GGATC	4 cut(s)	1042, 1829, 1842, 2026
BspT107I	GGYRCC	2 cut(s)	2051, 2387
BspTI	CTTAAG	1 cut(s)	1652
BsrGI	TGTACA	1 cut(s)	1788
BsrI	ACTGG	6 cut(s)	106, 688, 1174, 1742, 2249, 2274
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	8 cut(s)	711, 1205, 1637, 1838, 1864, 2073, 2164, 2370
Bst2UI	CCWGG	4 cut(s)	498, 741, 1585, 2056
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	1652
BstAUI	TGTACA	1 cut(s)	1788
BstBAI	YACGTR	1 cut(s)	2120
BstC8I	GCNNGC	3 cut(s)	1806, 2115, 2171
BstDEI	CTNAG	2 cut(s)	1313, 1944
BstDSI	CCRYGG	1 cut(s)	2073
BstEII	GGTNACC	1 cut(s)	2288
BstENI	CCTNNNNNAGG	1 cut(s)	715
BstF5I	GGATG	7 cut(s)	391, 539, 823, 1255, 1510, 1894, 2053
BstMAI	GTCTC	3 cut(s)	110, 520, 1367
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 1234, 1318, 1454, 1589, 2078
BstNI	CCWGG	4 cut(s)	498, 741, 1585, 2056
BstNSI	RCATGY	3 cut(s)	428, 1631, 2173
BstPI	GGTNACC	1 cut(s)	2288
BstSCI	CCNGG	8 cut(s)	496, 739, 1428, 1583, 1728, 2054, 2284, 2344
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	7 cut(s)	51, 247, 420, 474, 1402, 1460, 1601
BstV2I	GAAGAC	1 cut(s)	1617
BstX2I	RGATCY	2 cut(s)	1834, 2018
BstYI	RGATCY	2 cut(s)	1834, 2018
Bsu15I	ATCGAT	1 cut(s)	1178
BsuI	GTATCC	3 cut(s)	358, 1123, 1426
BsuRI	GGCC	3 cut(s)	863, 1237, 1717
BsuTUI	ATCGAT	1 cut(s)	1178
BtgI	CCRYGG	1 cut(s)	2073
BtrI	CACGTC	1 cut(s)	907
BtsCI	GGATG	7 cut(s)	391, 539, 823, 1255, 1510, 1894, 2053
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	8 cut(s)	82, 99, 276, 545, 681, 900, 1021, 2267
BveI	ACCTGC	1 cut(s)	2301
Cac8I	GCNNGC	3 cut(s)	1806, 2115, 2171
CciI	TCATGA	2 cut(s)	1141, 1962
Cfr13I	GGNCC	5 cut(s)	457, 1193, 1235, 1739, 2248
ClaI	ATCGAT	1 cut(s)	1178
CseI	GACGC	3 cut(s)	17, 40, 1965
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	5 cut(s)	329, 550, 1301, 1789, 2155
CspCI	CAANNNNNGTGG	4 cut(s)	227, 262, 611, 646
CviQI	GTAC	5 cut(s)	329, 550, 1301, 1789, 2155
DdeI	CTNAG	2 cut(s)	1313, 1944
DraIII	CACNNNGTG	1 cut(s)	687
EaeI	YGGCCR	2 cut(s)	861, 1715
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	1943
Eco130I	CCWWGG	8 cut(s)	711, 1205, 1637, 1838, 1864, 2073, 2164, 2370
Eco24I	GRGCYC	2 cut(s)	621, 1945
Eco32I	GATATC	2 cut(s)	640, 751
Eco47I	GGWCC	4 cut(s)	457, 1193, 1739, 2248
Eco53kI	GAGCTC	1 cut(s)	1943
Eco57I	CTGAAG	1 cut(s)	1461
Eco72I	CACGTG	1 cut(s)	2120
Eco88I	CYCGRG	1 cut(s)	2376
Eco91I	GGTNACC	1 cut(s)	2288
EcoICRI	GAGCTC	1 cut(s)	1943
EcoNI	CCTNNNNNAGG	1 cut(s)	715
EcoO109I	RGGNCCY	2 cut(s)	1235, 2248
EcoO65I	GGTNACC	1 cut(s)	2288
EcoRI	GAATTC	1 cut(s)	2354
EcoRII	CCWGG	4 cut(s)	496, 739, 1583, 2054
EcoRV	GATATC	2 cut(s)	640, 751
EcoT14I	CCWWGG	8 cut(s)	711, 1205, 1637, 1838, 1864, 2073, 2164, 2370
EcoT38I	GRGCYC	2 cut(s)	621, 1945
ErhI	CCWWGG	8 cut(s)	711, 1205, 1637, 1838, 1864, 2073, 2164, 2370
FalI	AAGNNNNNCTT	4 cut(s)	1189, 1221, 1287, 1319
FaqI	GGGAC	7 cut(s)	43, 399, 551, 734, 1691, 2072, 2261
Fnu4HI	GCNGC	7 cut(s)	65, 261, 434, 463, 1416, 1449, 1590
FokI	GGATG	7 cut(s)	398, 546, 830, 1262, 1517, 1901, 2060
FriOI	GRGCYC	2 cut(s)	621, 1945
Fsp4HI	GCNGC	7 cut(s)	65, 261, 434, 463, 1416, 1449, 1590
FspBI	CTAG	4 cut(s)	177, 1029, 1638, 2384
GluI	GCNGC	7 cut(s)	65, 261, 434, 463, 1416, 1449, 1590
GsaI	CCCAGC	1 cut(s)	1461
GsuI	CTGGAG	4 cut(s)	487, 519, 621, 2174
HaeIII	GGCC	3 cut(s)	863, 1237, 1717
HapII	CCGG	4 cut(s)	1430, 1730, 2285, 2346
HgaI	GACGC	3 cut(s)	17, 40, 1965
Hin1I	GRCGYC	1 cut(s)	9
HincII	GTYRAC	2 cut(s)	1996, 2224
HindII	GTYRAC	2 cut(s)	1996, 2224
HpaI	GTTAAC	1 cut(s)	2224
HpaII	CCGG	4 cut(s)	1430, 1730, 2285, 2346
HphI	GGTGA	4 cut(s)	17, 773, 1891, 2282
Hpy166II	GTNNAC	8 cut(s)	146, 910, 984, 1012, 1689, 1791, 1996, 2224
Hpy188I	TCNGA	7 cut(s)	996, 1316, 1397, 1930, 2065, 2127, 2398
Hpy8I	GTNNAC	8 cut(s)	146, 910, 984, 1012, 1689, 1791, 1996, 2224
Hpy99I	CGWCG	2 cut(s)	1959, 2003
HpyAV	CCTTC	8 cut(s)	344, 782, 1226, 1468, 1879, 2092, 2194, 2318
HpyCH4IV	ACGT	3 cut(s)	906, 2119, 2275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 1234, 1318, 1454, 1589, 2078
HpyF3I	CTNAG	2 cut(s)	1313, 1944
HpySE526I	ACGT	3 cut(s)	906, 2119, 2275
Hsp92I	GRCGYC	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	2224
LmnI	GCTCC	5 cut(s)	302, 1412, 1642, 2078, 2110
Lsp1109I	GCAGC	7 cut(s)	51, 247, 420, 474, 1402, 1460, 1601
LweI	GCATC	6 cut(s)	314, 547, 637, 1184, 1435, 1495
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	4 cut(s)	177, 1029, 1638, 2384
MaeII	ACGT	3 cut(s)	906, 2119, 2275
MaeIII	GTNAC	7 cut(s)	5, 541, 765, 929, 2288, 2314, 2332
MfeI	CAATTG	1 cut(s)	1401
MflI	RGATCY	2 cut(s)	1834, 2018
MhlI	GDGCHC	5 cut(s)	253, 621, 967, 1945, 2163
MlsI	TGGCCA	2 cut(s)	863, 1717
MluNI	TGGCCA	2 cut(s)	863, 1717
MlyI	GAGTC	7 cut(s)	239, 296, 478, 493, 716, 1742, 2054
MmeI	TCCRAC	2 cut(s)	2110, 2290
Mox20I	TGGCCA	2 cut(s)	863, 1717
MroXI	GAANNNNTTC	1 cut(s)	402
MscI	TGGCCA	2 cut(s)	863, 1717
MseI	TTAA	7 cut(s)	311, 480, 771, 842, 1653, 1800, 2223
MslI	CAYNNNNRTG	1 cut(s)	905
Msp20I	TGGCCA	2 cut(s)	863, 1717
MspA1I	CMGCKG	2 cut(s)	465, 1592
MspCI	CTTAAG	1 cut(s)	1652
MspI	CCGG	4 cut(s)	1430, 1730, 2285, 2346
MspR9I	CCNGG	8 cut(s)	498, 741, 1430, 1585, 1730, 2056, 2286, 2346
MunI	CAATTG	1 cut(s)	1401
Mva1269I	GAATGC	1 cut(s)	1497
MvaI	CCWGG	4 cut(s)	498, 741, 1585, 2056
MwoI	GCNNNNNNNGC	6 cut(s)	257, 1234, 1318, 1454, 1589, 2078
NciI	CCSGG	4 cut(s)	1430, 1730, 2286, 2346
NcoI	CCATGG	1 cut(s)	2073
NlaIV	GGNNCC	6 cut(s)	1836, 2053, 2080, 2112, 2249, 2389
NmeAIII	GCCGAG	2 cut(s)	37, 1204
NmuCI	GTSAC	3 cut(s)	5, 2288, 2332
NspI	RCATGY	3 cut(s)	428, 1631, 2173
OliI	CACNNNNGTG	1 cut(s)	905
PaeI	GCATGC	1 cut(s)	2173
PaeR7I	CTCGAG	1 cut(s)	2376
PagI	TCATGA	2 cut(s)	1141, 1962
PaqCI	CACCTGC	1 cut(s)	2301
PciI	ACATGT	1 cut(s)	424
PctI	GAATGC	1 cut(s)	1497
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	7 cut(s)	1555, 1725, 1870, 1925, 1949, 2128, 2180
PflFI	GACNNNGTC	1 cut(s)	1328
PflMI	CCANNNNNTGG	2 cut(s)	941, 2120
PfoI	TCCNGGA	3 cut(s)	496, 1428, 1728
PkrI	GCNGC	7 cut(s)	66, 262, 435, 464, 1417, 1450, 1591
PleI	GAGTC	7 cut(s)	238, 295, 477, 492, 716, 1741, 2054
PmaCI	CACGTG	1 cut(s)	2120
PmlI	CACGTG	1 cut(s)	2120
PpsI	GAGTC	7 cut(s)	238, 295, 477, 492, 716, 1741, 2054
Ppu21I	YACGTR	1 cut(s)	2120
PpuMI	RGGWCCY	1 cut(s)	2248
PscI	ACATGT	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	1945
Psp5II	RGGWCCY	1 cut(s)	2248
Psp6I	CCWGG	4 cut(s)	496, 739, 1583, 2054
PspCI	CACGTG	1 cut(s)	2120
PspEI	GGTNACC	1 cut(s)	2288
PspFI	CCCAGC	1 cut(s)	1457
PspGI	CCWGG	4 cut(s)	496, 739, 1583, 2054
PspN4I	GGNNCC	6 cut(s)	1836, 2053, 2080, 2112, 2249, 2389
PspPI	GGNCC	5 cut(s)	457, 1193, 1235, 1739, 2248
PspPPI	RGGWCCY	1 cut(s)	2248
PspXI	VCTCGAGB	1 cut(s)	2376
PsuI	RGATCY	2 cut(s)	1834, 2018
PsyI	GACNNNGTC	1 cut(s)	1328
PvuII	CAGCTG	2 cut(s)	465, 1592
RsaI	GTAC	5 cut(s)	330, 551, 1302, 1790, 2156
RsaNI	GTAC	5 cut(s)	329, 550, 1301, 1789, 2155
RseI	CAYNNNNRTG	1 cut(s)	905
SacI	GAGCTC	1 cut(s)	1945
SaqAI	TTAA	7 cut(s)	311, 480, 771, 842, 1653, 1800, 2223
SatI	GCNGC	7 cut(s)	65, 261, 434, 463, 1416, 1449, 1590
Sau96I	GGNCC	5 cut(s)	457, 1193, 1235, 1739, 2248
SchI	GAGTC	7 cut(s)	239, 296, 478, 493, 716, 1742, 2054
ScrFI	CCNGG	8 cut(s)	498, 741, 1430, 1585, 1730, 2056, 2286, 2346
SduI	GDGCHC	5 cut(s)	253, 621, 967, 1945, 2163
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	6 cut(s)	314, 547, 637, 1184, 1435, 1495
Sfr274I	CTCGAG	1 cut(s)	2376
SinI	GGWCC	4 cut(s)	457, 1193, 1739, 2248
SlaI	CTCGAG	1 cut(s)	2376
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	3 cut(s)	724, 1652, 2376
SmoI	CTYRAG	3 cut(s)	724, 1652, 2376
SphI	GCATGC	1 cut(s)	2173
SsiI	CCGC	2 cut(s)	91, 460
SspI	AATATT	1 cut(s)	1755
SspMI	CTAG	4 cut(s)	177, 1029, 1638, 2384
SstI	GAGCTC	1 cut(s)	1945
StyD4I	CCNGG	8 cut(s)	496, 739, 1428, 1583, 1728, 2054, 2284, 2344
StyI	CCWWGG	8 cut(s)	711, 1205, 1637, 1838, 1864, 2073, 2164, 2370
TaiI	ACGT	3 cut(s)	909, 2122, 2278
TaqI	TCGA	3 cut(s)	1178, 1492, 2377
TatI	WGTACW	2 cut(s)	1300, 1788
TfiI	GAWTC	7 cut(s)	1555, 1725, 1870, 1925, 1949, 2128, 2180
Tru1I	TTAA	7 cut(s)	311, 480, 771, 842, 1653, 1800, 2223
Tru9I	TTAA	7 cut(s)	311, 480, 771, 842, 1653, 1800, 2223
TscAI	CASTG	8 cut(s)	82, 106, 283, 552, 688, 907, 1021, 2274
TseFI	GTSAC	3 cut(s)	5, 2288, 2332
TseI	GCWGC	7 cut(s)	64, 260, 433, 462, 1415, 1448, 1589
Tsp45I	GTSAC	3 cut(s)	5, 2288, 2332
TspDTI	ATGAA	9 cut(s)	26, 395, 434, 1531, 1914, 1951, 1964, 2120, 2193
TspGWI	ACGGA	3 cut(s)	785, 2129, 2351
TspRI	CASTG	8 cut(s)	82, 106, 283, 552, 688, 907, 1021, 2274
Tth111I	GACNNNGTC	1 cut(s)	1328
Van91I	CCANNNNNTGG	2 cut(s)	941, 2120
Vha464I	CTTAAG	1 cut(s)	1652
VpaK11BI	GGWCC	4 cut(s)	457, 1193, 1739, 2248
VspI	ATTAAT	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	715
XapI	RAATTY	7 cut(s)	82, 378, 491, 588, 705, 1162, 2354
XceI	RCATGY	3 cut(s)	428, 1631, 2173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1203
XhoI	CTCGAG	1 cut(s)	2376
XmaJI	CCTAGG	1 cut(s)	1637
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	4 cut(s)	177, 1029, 1638, 2384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.