Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016893

Physical Location & Seq

Genomic Coordinates Reverse (-)

23353562 .. 23355255

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTGGAGCAACCTACCCTTTGATCTTCTTTCCAACATCTTCTTCTTCCTCTCCCCCGACTCTTTTGCTTGCGCCAATGCAACATGTCGAAACTGGCATCAAGCTTGTGCCTCCACACTCAAGAACCCGGTTTTGTTGCAGAAGCAACTTCACCCTCCATGGTTCGTAGCATTGCCTCTTCGAAACAACTCCCTTTCTTGCTACGCTCACAATCCAACCAACACCAACAACAACTGGTATCAACTGTCTCTAGATTTCTTACCACACCCTACTCGCCTCCTGGCTCACCTAGAAGGCCTCCTCTTGGTCCGACCCTCCATCTCCACAGTTCTCCAATTGGGTCTCTGCAACCCGTTTACAAGGCAATACAAGCTGCTTCCGATGTTAAACATCAAAAGAACCAACCCGGCAGTTGGGGTGATATCATTATCACTCCCTGCAGCGTTTGGAACAGAGTCATTTCCTTGCTTCAAAGTCTACGTGGCCGGTGGCATGTCGGAGGCGTCCCGCGGCGGCGCCACGTATGAGCCGACGCTGGAAATGTACGACCCTCAGCTGAACGCGTGGCGAATAGTCGGCACGATGCCGATGGAGTTTGCTGTGAGGCTAACAGTGTGGACACCAAAGGAGAGTGTATACTGTGATGGGGTGCTGTATTGGATGACGTCTGCGAGGGCATACAGCCTAATGGGGTACGACATTGAGAGGAACACTTGGAGAGAGCTGAGTGTGCCAATGGCGGACAAGCTGGAGTTTGCGGTGCTGGTTCTGTGCCATGGGAGGCTGACACTAGTGGGAGGGACGTGTGCTTTAGGGGGTTGTATATGGGAGCTTGGTGAGGGAGAGAGTTGGGTGATGGTTGAGAAGGTGCCGAGTGAGTTGGGGAGGAGGTTTATAGGGGAGAAGGGAAGTTGGGATAGGATTAAGTGTGTGGGGAGTGATGGGGGTATTTACTTGTATAGGGACCTTTGGGCAGGAATGGTGGTTTGGAGGGAAGTTGATAACACTACATGGGAATGGGTTTGGATTGAAGGGTGTGAGTCGATTAGAGGTAAACAAGTGAGAAACTTGCAAATCAAGGGAGTTCTTGTACATCCTAATCTTGTACCCTCTTCCATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

375

Amino Acids

42.21

Weight (kDa)

7.51

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 38	1.4e-07	F-box-like
F-box	PF00646	2 - 38	8.1e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016893)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30250
malus_domestica	MD17G1206200.v1.1
prunus_persica	Prupe.3G081200_v2.0.a1
pyrus_communis	pycom17g20940
rosa_chinensis	RchiOBHm_Chr2g0136491
rosa_laevigata	RLG00000019536
rosa_multiflora	Rmu_sc0015604.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108240
rosa_rugosa	Rorug02G0331300
rosa_samantha	Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana	Rw2G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	668
AccB1I	GGYRCC	2 cut(s)	515, 868
AccI	GTMKAC	2 cut(s)	477, 636
AccII	CGCG	2 cut(s)	510, 563
AciI	CCGC	5 cut(s)	508, 510, 513, 740, 758
AcoI	YGGCCR	1 cut(s)	483
AcyI	GRCGYC	3 cut(s)	503, 516, 665
AfaI	GTAC	4 cut(s)	545, 695, 1092, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	304, 413
AflIII	ACRYGT	3 cut(s)	83, 561, 803
AgsI	TTSAA	2 cut(s)	472, 1031
AhlI	ACTAGT	1 cut(s)	790
AjiI	CACGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 970, 1002
AluBI	AGCT	6 cut(s)	104, 373, 556, 724, 748, 832
AluI	AGCT	6 cut(s)	104, 373, 556, 724, 748, 832
Alw26I	GTCTC	2 cut(s)	252, 347
AoxI	GGCC	2 cut(s)	295, 483
ApeKI	GCWGC	2 cut(s)	373, 440
AspLEI	GCGC	2 cut(s)	74, 518
AspS9I	GGNCC	2 cut(s)	307, 964
AsuC2I	CCSGG	2 cut(s)	128, 407
AsuHPI	GGTGA	5 cut(s)	143, 278, 430, 848, 865
AsuII	TTCGAA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	307, 964
BanI	GGYRCC	2 cut(s)	515, 868
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	360, 452
BccI	CCATC	5 cut(s)	326, 583, 638, 850, 935
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	128, 407
BcoDI	GTCTC	2 cut(s)	252, 347
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	3 cut(s)	251, 290, 791
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	519
BisI	GCNGC	4 cut(s)	374, 441, 511, 514
BlsI	GCNGC	4 cut(s)	375, 442, 512, 515
Bme1390I	CCNGG	3 cut(s)	128, 281, 407
Bme18I	GGWCC	2 cut(s)	307, 964
BmgBI	CACGTC	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	307, 964
BmiI	GGNNCC	3 cut(s)	517, 870, 965
BmrFI	CCNGG	3 cut(s)	128, 281, 407
BmsI	GCATC	2 cut(s)	106, 573
BpmI	CTGGAG	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	128, 407
BsaAI	YACGTR	2 cut(s)	481, 522
BsaHI	GRCGYC	3 cut(s)	503, 516, 665
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	158, 508, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	1074, 1104
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 413
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	98, 239
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	158, 508, 775
BseGI	GGATG	2 cut(s)	666, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	304, 413
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	566, 716
BseNI	ACTGG	2 cut(s)	98, 239
BseRI	GAGGAG	2 cut(s)	290, 901
BseXI	GCAGC	2 cut(s)	360, 452
Bsh1236I	CGCG	2 cut(s)	510, 563
BshFI	GGCC	2 cut(s)	297, 485
BshNI	GGYRCC	2 cut(s)	515, 868
BsiSI	CCGG	3 cut(s)	128, 407, 486
BslFI	GGGAC	3 cut(s)	490, 814, 977
BslI	CCNNNNNNNGG	2 cut(s)	304, 413
BsmAI	GTCTC	2 cut(s)	252, 347
BsmFI	GGGAC	3 cut(s)	490, 814, 977
BsnI	GGCC	2 cut(s)	297, 485
Bso31I	GGTCTC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	1090
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	2 cut(s)	158, 775
BspACI	CCGC	5 cut(s)	508, 510, 513, 740, 758
BspANI	GGCC	2 cut(s)	297, 485
BspCNI	CTCAG	2 cut(s)	565, 717
BspFNI	CGCG	2 cut(s)	510, 563
BspLI	GGNNCC	3 cut(s)	517, 870, 965
BspMAI	CTGCAG	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	2 cut(s)	515, 868
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	1090
BsrI	ACTGG	2 cut(s)	98, 239
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	158, 508, 775
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	637
BssNI	GRCGYC	3 cut(s)	503, 516, 665
BssT1I	CCWWGG	2 cut(s)	158, 775
Bst1107I	GTATAC	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	4 cut(s)	246, 328, 613, 641
Bst6I	CTCTTC	2 cut(s)	183, 1117
BstACI	GRCGYC	3 cut(s)	503, 516, 665
BstAUI	TGTACA	1 cut(s)	1090
BstBAI	YACGTR	2 cut(s)	481, 522
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	552, 725
BstDSI	CCRYGG	3 cut(s)	158, 508, 775
BstF5I	GGATG	2 cut(s)	666, 1093
BstFNI	CGCG	2 cut(s)	510, 563
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	74, 518
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	252, 347
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 730
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	87, 496
BstSCI	CCNGG	3 cut(s)	126, 279, 405
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	2 cut(s)	510, 563
BstV1I	GCAGC	2 cut(s)	360, 452
BstZ17I	GTATAC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	297, 485
BtgI	CCRYGG	3 cut(s)	158, 508, 775
BtrI	CACGTC	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	666, 1093
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	2 cut(s)	74, 518
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	307, 964
Cfr42I	CCGCGG	1 cut(s)	511
CseI	GACGC	2 cut(s)	492, 541
Csp6I	GTAC	4 cut(s)	544, 694, 1091, 1106
CviAII	CATG	5 cut(s)	84, 159, 493, 776, 1011
CviQI	GTAC	4 cut(s)	544, 694, 1091, 1106
DdeI	CTNAG	2 cut(s)	552, 725
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	183, 1117
EarI	CTCTTC	2 cut(s)	183, 1117
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	158, 775
Eco147I	AGGCCT	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	307, 964
EcoO109I	RGGNCCY	1 cut(s)	964
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	158, 775
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	158, 775
FaeI	CATG	5 cut(s)	87, 162, 496, 779, 1014
FaqI	GGGAC	3 cut(s)	490, 814, 977
FatI	CATG	5 cut(s)	83, 158, 492, 775, 1010
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	2 cut(s)	477, 636
Fnu4HI	GCNGC	4 cut(s)	374, 441, 511, 514
FokI	GGATG	2 cut(s)	673, 1080
Fsp4HI	GCNGC	4 cut(s)	374, 441, 511, 514
FspBI	CTAG	3 cut(s)	251, 290, 791
GlaI	GCGC	2 cut(s)	73, 517
GluI	GCNGC	4 cut(s)	374, 441, 511, 514
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	297, 485
HapII	CCGG	3 cut(s)	128, 407, 486
HgaI	GACGC	2 cut(s)	492, 541
HhaI	GCGC	2 cut(s)	74, 518
Hin1I	GRCGYC	3 cut(s)	503, 516, 665
Hin1II	CATG	5 cut(s)	87, 162, 496, 779, 1014
Hin6I	GCGC	2 cut(s)	72, 516
HinP1I	GCGC	2 cut(s)	72, 516
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	3 cut(s)	59, 455, 1040
HpaII	CCGG	3 cut(s)	128, 407, 486
HphI	GGTGA	5 cut(s)	143, 278, 430, 848, 865
Hpy166II	GTNNAC	5 cut(s)	357, 478, 618, 637, 1055
Hpy188I	TCNGA	3 cut(s)	311, 381, 499
Hpy188III	TCNNGA	2 cut(s)	121, 251
Hpy8I	GTNNAC	5 cut(s)	357, 478, 618, 637, 1055
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	4 cut(s)	287, 859, 898, 1025
HpyCH4III	ACNGT	4 cut(s)	246, 328, 613, 641
HpyCH4IV	ACGT	4 cut(s)	480, 521, 665, 803
HpyCH4V	TGCA	5 cut(s)	80, 139, 348, 440, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 730
HpyF3I	CTNAG	2 cut(s)	552, 725
HpySE526I	ACGT	4 cut(s)	480, 521, 665, 803
Hsp92I	GRCGYC	3 cut(s)	503, 516, 665
Hsp92II	CATG	5 cut(s)	87, 162, 496, 779, 1014
HspAI	GCGC	2 cut(s)	72, 516
KasI	GGCGCC	1 cut(s)	515
KspI	CCGCGG	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	6, 829
Lsp1109I	GCAGC	2 cut(s)	360, 452
LweI	GCATC	2 cut(s)	106, 573
MaeI	CTAG	3 cut(s)	251, 290, 791
MaeII	ACGT	4 cut(s)	480, 521, 665, 803
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	6 cut(s)	17, 31, 34, 37, 170, 1104
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	1 cut(s)	335
MluI	ACGCGT	1 cut(s)	561
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	53, 464, 1049
MmeI	TCCRAC	4 cut(s)	57, 239, 334, 477
MseI	TTAA	2 cut(s)	386, 924
MslI	CAYNNNNRTG	1 cut(s)	1015
MspA1I	CMGCKG	2 cut(s)	510, 556
MspI	CCGG	3 cut(s)	128, 407, 486
MspR9I	CCNGG	3 cut(s)	128, 281, 407
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	510, 563
MwoI	GCNNNNNNNGC	2 cut(s)	370, 730
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	128, 407
NcoI	CCATGG	2 cut(s)	158, 775
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	87, 162, 496, 779, 1014
NlaIV	GGNNCC	3 cut(s)	517, 870, 965
NmeAIII	GCCGAG	1 cut(s)	897
NspI	RCATGY	2 cut(s)	87, 496
NspV	TTCGAA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	297
PciI	ACATGT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	375, 442, 512, 515
PleI	GAGTC	3 cut(s)	53, 463, 1048
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	3 cut(s)	53, 463, 1048
Ppu21I	YACGTR	2 cut(s)	481, 522
PpuMI	RGGWCCY	1 cut(s)	964
PscI	ACATGT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	964
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	517, 870, 965
PspPI	GGNCC	2 cut(s)	307, 964
PspPPI	RGGWCCY	1 cut(s)	964
PstI	CTGCAG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	4 cut(s)	545, 695, 1092, 1107
RsaNI	GTAC	4 cut(s)	544, 694, 1091, 1106
RseI	CAYNNNNRTG	1 cut(s)	1015
SacII	CCGCGG	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	386, 924
SatI	GCNGC	4 cut(s)	374, 441, 511, 514
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	2 cut(s)	307, 964
SchI	GAGTC	3 cut(s)	53, 464, 1049
ScrFI	CCNGG	3 cut(s)	128, 281, 407
SfaNI	GCATC	2 cut(s)	106, 573
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	517
Sfr303I	CCGCGG	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	511
SinI	GGWCC	2 cut(s)	307, 964
SmiMI	CAYNNNNRTG	1 cut(s)	1015
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	5 cut(s)	508, 510, 513, 740, 758
SspDI	GGCGCC	1 cut(s)	515
SspMI	CTAG	3 cut(s)	251, 290, 791
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	126, 279, 405
StyI	CCWWGG	2 cut(s)	158, 775
TaaI	ACNGT	4 cut(s)	246, 328, 613, 641
TaiI	ACGT	4 cut(s)	483, 524, 668, 806
TaqI	TCGA	3 cut(s)	88, 181, 1043
TasI	AATT	1 cut(s)	335
TatI	WGTACW	1 cut(s)	1090
TauI	GCSGC	2 cut(s)	513, 516
Tru1I	TTAA	2 cut(s)	386, 924
Tru9I	TTAA	2 cut(s)	386, 924
TscAI	CASTG	1 cut(s)	618
TseI	GCWGC	2 cut(s)	373, 440
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	307, 964
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	2 cut(s)	87, 496
XmiI	GTMKAC	2 cut(s)	477, 636
XspI	CTAG	3 cut(s)	251, 290, 791
ZraI	GACGTC	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.