Rroxscaffold_2G00108240

Protein UNUSUAL FLORAL

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
32226389 .. 32227537
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108240.1

Sequence Viewer

Length: 1149 bp
ATGTGGAGCGACCTCCCCTTTGATCTTCTCTCCAACATCTTCTTCTTCCTCTCCCCCGACTCTTTTGCTTGCGCCAAGGCAGCATGTCGAAACTGGCATCAAGCTTGTGCCTCCACACCGAGCTTCAAGAACCCGTTTTTGTTGCAGAAGCAACTGCACCCTCCATGGTTCATAGCATTGCCTCTTCGAAACAACAGCCTTTCTTGCTATGCTCACAATCCAATCAACACCAACAACAACTGGTATGAAATTTCTTTAGATTTCTTACCCCACCCAATTCGTCTCGTGGCTCACTTAGAAGGCCTCCTCTTGGTCCGACCCTCCATCTCTACCGTTCTCCAATTGGGTGTCTGCAACCCATTTACAAGGCAATACAAGCAGCTTCCAACGTTAAACATCAGAAGAACCAACCCGGCCGTGGGGGTGATATCACTCCCAGCATTTTCAAACACTAAATTAATGTTCGGAACAGATTCACTTCATTGCTTCGGAATCTACGTGGCTGGTGGGATGTCGGAGGCGCCCCGCGGCGGTGCCACGTACGAGCCGACGCTAGAAATGTACGACCCTCAGCTCGACGCGTGGCGAGTTGTCGGGTCGATGCCGATGGAGTTTGCAGTGAGGCTAACAGTGTGGACTCCAAAGGAGAGTGTGTACTGTGATGGGGTGCTGTATTGGATGACCTCTGCCAGGGCATACAGCTTAATGGGGTGTGACATTTCTTCTAACAGTTGGAGAGAGCTGAGAGTGCCAATGGCGGACAAGCTGGAGTTTGCTGTGCTGGTTCTGCGCAATGGGAGGCTGACACTTGTGGGAGGGACATGTGCTTTGGGGGTTTGTATATGGGAGCTTGGTGAGGGAGAGAGTTGGGTGATGGTTGAGACGGTTCCTAGTGAATTGGGGATGAGGTTTATAGGGGAGAAGGGAAGTTGGGATAGAACAAAGTGTGTGGGGAGTGATGGGGCTATTTACTTGTATAGGGACCTTTGGGCAGGAATGGTGGTTTGGAGGGAAGTTGGAGAAGGGAATAGTAAGTGGGAATGGTTTTGGATTGAAGGGTGTTCGTCGATTAGAGGTAAACAAGTGAGAAATTTGCAAATAAAGGGAGTTCTTATGCATCCTAATCTTGTACCCTCATCCATTTTCTAA

Protein Analysis

382

Amino Acids

43.04

Weight (kDa)

7.51

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 39 3.5e-07 F-box-like
F-box PF00646 2 - 42 9.2e-07 F-box domain
FBA_1 PF07734 88 - 272 1.3e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016893)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30250
malus_domestica MD17G1206200.v1.1
prunus_persica Prupe.3G081200_v2.0.a1
pyrus_communis pycom17g20940
rosa_chinensis RchiOBHm_Chr2g0136491
rosa_laevigata RLG00000019536
rosa_multiflora Rmu_sc0015604.1_g000002
rosa_roxburghii Rroxscaffold_2G00108240
rosa_rugosa Rorug02G0331300
rosa_samantha Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana Rw2G031230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 791
AccB1I GGYRCC 2 cut(s) 520, 533
AccII CGCG 2 cut(s) 528, 581
AciI CCGC 4 cut(s) 526, 528, 531, 758
AclI AACGTT 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 2 cut(s) 249, 1090
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 4 cut(s) 542, 563, 656, 1131
AfiI CCNNNNNNNGG 5 cut(s) 310, 418, 419, 530, 690
AflIII ACRYGT 2 cut(s) 579, 821
AgsI TTSAA 3 cut(s) 127, 447, 1055
AjnI CCWGG 1 cut(s) 689
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 988, 1020
AluBI AGCT 8 cut(s) 104, 123, 382, 574, 702, 742, 766, 850
AluI AGCT 8 cut(s) 104, 123, 382, 574, 702, 742, 766, 850
Alw26I GTCTC 2 cut(s) 287, 875
AoxI GGCC 2 cut(s) 301, 414
ApeKI GCWGC 2 cut(s) 80, 379
ApoI RAATTY 2 cut(s) 249, 1090
ArsI GACNNNNNNTTYG 3 cut(s) 34, 811, 843
AseI ATTAAT 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 472
AspLEI GCGC 3 cut(s) 74, 523, 792
AspS9I GGNCC 2 cut(s) 313, 982
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 436, 866, 883
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 2 cut(s) 313, 982
BanI GGYRCC 2 cut(s) 520, 533
BauI CACGAG 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 92, 391
BccI CCATC 5 cut(s) 332, 601, 656, 868, 953
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 691
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 287, 875
BfaI CTAG 2 cut(s) 554, 891
BfoI RGCGCY 1 cut(s) 524
BisI GCNGC 3 cut(s) 81, 380, 529
BlsI GCNGC 3 cut(s) 82, 381, 530
Bme1390I CCNGG 2 cut(s) 413, 691
Bme18I GGWCC 2 cut(s) 313, 982
BmgT120I GGNCC 2 cut(s) 313, 982
BmiI GGNNCC 4 cut(s) 522, 535, 888, 983
BmrFI CCNGG 2 cut(s) 413, 691
BmsI GCATC 3 cut(s) 106, 591, 1126
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 2 cut(s) 499, 540
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 5 cut(s) 75, 164, 417, 526, 690
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 310, 418, 419, 530, 690
Bse1I ACTGG 2 cut(s) 98, 245
Bse3DI GCAATG 3 cut(s) 176, 481, 799
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 5 cut(s) 75, 164, 417, 526, 690
BseGI GGATG 5 cut(s) 516, 684, 909, 1117, 1136
BseLI CCNNNNNNNGG 5 cut(s) 310, 418, 419, 530, 690
BseMI GCAATG 3 cut(s) 176, 481, 799
BseMII CTCAG 2 cut(s) 584, 734
BseNI ACTGG 2 cut(s) 98, 245
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 92, 391
BseYI CCCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 528, 581
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 2 cut(s) 303, 416
BshNI GGYRCC 2 cut(s) 520, 533
BsiEI CGRYCG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 413
BsiWI CGTACG 1 cut(s) 540
BslFI GGGAC 2 cut(s) 832, 995
BslI CCNNNNNNNGG 5 cut(s) 310, 418, 419, 530, 690
BsmAI GTCTC 2 cut(s) 287, 875
BsmBI CGTCTC 2 cut(s) 287, 875
BsmFI GGGAC 2 cut(s) 832, 995
BsnI GGCC 2 cut(s) 303, 416
Bsp119I TTCGAA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 526, 528, 531, 758
BspANI GGCC 2 cut(s) 303, 416
BspCNI CTCAG 2 cut(s) 583, 735
BspFNI CGCG 2 cut(s) 528, 581
BspLI GGNNCC 4 cut(s) 522, 535, 888, 983
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 520, 533
BsrDI GCAATG 3 cut(s) 176, 481, 799
BsrI ACTGG 2 cut(s) 98, 245
BssECI CCNNGG 5 cut(s) 75, 164, 417, 526, 690
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 521
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 75, 164
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 5 cut(s) 334, 631, 659, 731, 886
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 521
BstBAI YACGTR 2 cut(s) 499, 540
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 295, 570, 743
BstDSI CCRYGG 3 cut(s) 164, 417, 526
BstENI CCTNNNNNAGG 1 cut(s) 688
BstF5I GGATG 5 cut(s) 516, 684, 909, 1117, 1136
BstFNI CGCG 2 cut(s) 528, 581
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 3 cut(s) 74, 523, 792
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 287, 875
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 5 cut(s) 80, 204, 376, 748, 787
BstNI CCWGG 1 cut(s) 691
BstNSI RCATGY 2 cut(s) 87, 825
BstSCI CCNGG 2 cut(s) 411, 689
BstUI CGCG 2 cut(s) 528, 581
BstV1I GCAGC 2 cut(s) 92, 391
BstZI CGGCCG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 303, 416
BtgI CCRYGG 3 cut(s) 164, 417, 526
BtsCI GGATG 5 cut(s) 516, 684, 909, 1117, 1136
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 624, 636
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 3 cut(s) 74, 523, 792
Cfr13I GGNCC 2 cut(s) 313, 982
Cfr42I CCGCGG 1 cut(s) 529
CseI GACGC 2 cut(s) 559, 587
Csp6I GTAC 4 cut(s) 541, 562, 655, 1130
CspCI CAANNNNNGTGG 2 cut(s) 930, 965
CviAII CATG 3 cut(s) 84, 165, 822
CviQI GTAC 4 cut(s) 541, 562, 655, 1130
DdeI CTNAG 3 cut(s) 295, 570, 743
DinI GGCGCC 1 cut(s) 522
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 414
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 773
EclXI CGGCCG 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 75, 164
Eco147I AGGCCT 1 cut(s) 303
Eco32I GATATC 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 313, 982
Eco52I CGGCCG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 689
EcoRV GATATC 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 75, 164
EcoT22I ATGCAT 1 cut(s) 1119
EgeI GGCGCC 1 cut(s) 522
EheI GGCGCC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 75, 164
Esp3I CGTCTC 2 cut(s) 287, 875
FaeI CATG 3 cut(s) 87, 168, 825
FaqI GGGAC 2 cut(s) 832, 995
FatI CATG 3 cut(s) 83, 164, 821
FauI CCCGC 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 81, 380, 529
FokI GGATG 5 cut(s) 523, 691, 916, 1104, 1123
Fsp4HI GCNGC 3 cut(s) 81, 380, 529
FspBI CTAG 2 cut(s) 554, 891
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 3 cut(s) 73, 522, 791
GluI GCNGC 3 cut(s) 81, 380, 529
GsaI CCCAGC 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 2 cut(s) 303, 416
HapII CCGG 1 cut(s) 413
HgaI GACGC 2 cut(s) 559, 587
HhaI GCGC 3 cut(s) 74, 523, 792
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 3 cut(s) 87, 168, 825
Hin6I GCGC 3 cut(s) 72, 521, 790
HinP1I GCGC 3 cut(s) 72, 521, 790
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 4 cut(s) 59, 473, 492, 637
HpaII CCGG 1 cut(s) 413
HphI GGTGA 3 cut(s) 436, 866, 883
Hpy166II GTNNAC 3 cut(s) 636, 655, 1079
Hpy188I TCNGA 5 cut(s) 317, 401, 467, 491, 517
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 3 cut(s) 636, 655, 1079
Hpy99I CGWCG 3 cut(s) 553, 581, 1069
HpyAV CCTTC 4 cut(s) 293, 916, 1016, 1049
HpyCH4III ACNGT 5 cut(s) 334, 631, 659, 731, 886
HpyCH4IV ACGT 3 cut(s) 389, 498, 539
HpyCH4V TGCA 6 cut(s) 145, 157, 354, 617, 1096, 1117
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 204, 376, 748, 787
HpyF3I CTNAG 3 cut(s) 295, 570, 743
HpySE526I ACGT 3 cut(s) 389, 498, 539
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 3 cut(s) 87, 168, 825
HspAI GCGC 3 cut(s) 72, 521, 790
KasI GGCGCC 1 cut(s) 520
KspI CCGCGG 1 cut(s) 529
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 6, 847
Lsp1109I GCAGC 2 cut(s) 92, 391
LweI GCATC 3 cut(s) 106, 591, 1126
MaeI CTAG 2 cut(s) 554, 891
MaeII ACGT 3 cut(s) 389, 498, 539
MaeIII GTNAC 1 cut(s) 713
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 7 cut(s) 17, 31, 34, 37, 176, 414, 714
MfeI CAATTG 1 cut(s) 341
MluCI AATT 6 cut(s) 249, 276, 341, 455, 896, 1090
MluI ACGCGT 1 cut(s) 579
Mly113I GGCGCC 1 cut(s) 521
MlyI GAGTC 2 cut(s) 53, 631
MmeI TCCRAC 6 cut(s) 57, 340, 410, 495, 713, 997
Mph1103I ATGCAT 1 cut(s) 1119
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 3 cut(s) 392, 458, 704
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 413, 691
MunI CAATTG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 691
MvnI CGCG 2 cut(s) 528, 581
MwoI GCNNNNNNNGC 5 cut(s) 80, 204, 376, 748, 787
NarI GGCGCC 1 cut(s) 521
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 164
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 87, 168, 825
NlaIV GGNNCC 4 cut(s) 522, 535, 888, 983
NmuCI GTSAC 1 cut(s) 713
NsbI TGCGCA 1 cut(s) 791
NsiI ATGCAT 1 cut(s) 1119
NspI RCATGY 2 cut(s) 87, 825
NspV TTCGAA 1 cut(s) 187
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 1 cut(s) 821
PcsI WCGNNNNNNNCGW 2 cut(s) 495, 545
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 473, 492
Pfl23II CGTACG 1 cut(s) 540
PkrI GCNGC 3 cut(s) 82, 381, 530
PleI GAGTC 2 cut(s) 53, 631
PluTI GGCGCC 1 cut(s) 524
PpsI GAGTC 2 cut(s) 53, 631
Ppu21I YACGTR 2 cut(s) 499, 540
PpuMI RGGWCCY 1 cut(s) 982
PscI ACATGT 1 cut(s) 821
PshBI ATTAAT 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 1 cut(s) 689
PspFI CCCAGC 1 cut(s) 436
PspGI CCWGG 1 cut(s) 689
PspLI CGTACG 1 cut(s) 540
PspN4I GGNNCC 4 cut(s) 522, 535, 888, 983
PspPI GGNCC 2 cut(s) 313, 982
PspPPI RGGWCCY 1 cut(s) 982
RsaI GTAC 4 cut(s) 542, 563, 656, 1131
RsaNI GTAC 4 cut(s) 541, 562, 655, 1130
SacII CCGCGG 1 cut(s) 529
SaqAI TTAA 3 cut(s) 392, 458, 704
SatI GCNGC 3 cut(s) 81, 380, 529
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 313, 982
SchI GAGTC 2 cut(s) 53, 631
ScrFI CCNGG 2 cut(s) 413, 691
SfaNI GCATC 3 cut(s) 106, 591, 1126
SfoI GGCGCC 1 cut(s) 522
Sfr303I CCGCGG 1 cut(s) 529
SfuI TTCGAA 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 529
SinI GGWCC 2 cut(s) 313, 982
Sse9I AATT 6 cut(s) 249, 276, 341, 455, 896, 1090
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 4 cut(s) 526, 528, 531, 758
SspDI GGCGCC 1 cut(s) 520
SspMI CTAG 2 cut(s) 554, 891
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 411, 689
StyI CCWWGG 2 cut(s) 75, 164
TaaI ACNGT 5 cut(s) 334, 631, 659, 731, 886
TaiI ACGT 3 cut(s) 392, 501, 542
TaqI TCGA 5 cut(s) 88, 187, 576, 599, 1067
TasI AATT 6 cut(s) 249, 276, 341, 455, 896, 1090
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 473, 492
Tru1I TTAA 3 cut(s) 392, 458, 704
Tru9I TTAA 3 cut(s) 392, 458, 704
TscAI CASTG 2 cut(s) 624, 636
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 80, 379
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 3 cut(s) 160, 261, 470
TspRI CASTG 2 cut(s) 624, 636
VpaK11BI GGWCC 2 cut(s) 313, 982
VspI ATTAAT 1 cut(s) 458
XagI CCTNNNNNAGG 1 cut(s) 688
XapI RAATTY 2 cut(s) 249, 1090
XceI RCATGY 2 cut(s) 87, 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 2 cut(s) 554, 891
Zsp2I ATGCAT 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.