RLG00000019536

Protein UNUSUAL FLORAL

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
53266043 .. 53267441
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019536

Sequence Viewer

Length: 1203 bp
ATGTGGAGCAACCTCCCCTTTGATCTTCTCTCCAACATCTTCTTCTTCCTCTCCCCCGACTCTTTTGCTTGCGCCAAGGCAACATGTCAAAACTGGCATCAAGCTTGTGCCTCCACACCGAGCTTCAAGAACCCGTTTTTGTTGCAGAAGCAACTTCACCCTCCATGGTTCATAGCATTGCCTCTTCGAAACAACAGCCTTTCTTGCTATGCTCACAATCCAATCAACACCAACAACAACTGGTATGAAATTTCTTTAGATTTCTTACCCCACCCAATTCGTCTCGTGGCTCACTTAGAAGGCCTCCTCTTGGTCCGACCCTCCATCTCTACGGTTCTCCAATTGGGTGTATGCAACCCATTTACAAGGCAATACAAGCAGCTTCCGACGTTAAACATCAGAAGAACCAACCCGGCCGTGGGGGTGATATCACTTCCAGCAGTTTCAAACACTAAAATGTTCGGAACAGATTCATTTCATTGCTTTGGAATCTACGTGGCTGGTGGGATGTCGGAGGCGCCCAGCGGCGGCGCCACGTACGAGCCGACGCTGGAAATGTACGACCCTCAGCTCGACGCGTGGCGAATTGTCGGGTCGATGCCGATGGAGTTTGCAGTGAGGCTAACAGTTTGGACTCCAAAGGAGAGTGTGTACTGTGATGGGGTGCTGTATTGGATGACCTCTGCCAGGGCATACAGCTTAATGGGGTGTGACATTTCTTCTAACAGTTGGAGAGAGCTGAGCGTGCCAATGGCGGACAAGCTGGAGTTTGCTGTGCTGGTTCTGCGCAATGGGAGGCTGACACTTGTGGGAGGGACATGTGCTTTGGGGGTTTGTATATGGGAGCTTGGTGAGGGAGAGAGTTGGGTGATGGTTGAGACGGTTCCTAGTGAATTGGGGATGAGGTTTATAGGGGAGAAGGGAAGTTGGGATAGAACAAAGTGTGTGGGGAGTGATGGGGCTATTTACTTGTATAGGGACCTTTGGGCAGGAATGGTGGTTTGGAGGGAAGTTGGAGAAGGGAATAGTAAGTGGGAATGGTTTTGGATTGAAGGGTGTTCGTCGACTAAAGCGTATTTGAAAGCCACCGGCCACCACCAACACTTCAATAGCCACCAACCGCAACACCTCAATTTGGGATGGCAATGGGGCAGGTTGCGTTTCTCATATCCAAATTCATTCTTCGCCCCACTCTCTGATTAA

Protein Analysis

401

Amino Acids

45.16

Weight (kDa)

6.59

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 42 3.4e-07 F-box domain
F-box-like PF12937 2 - 39 9e-07 F-box-like
FBA_1 PF07734 88 - 271 2.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016893)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30250
malus_domestica MD17G1206200.v1.1
prunus_persica Prupe.3G081200_v2.0.a1
pyrus_communis pycom17g20940
rosa_chinensis RchiOBHm_Chr2g0136491
rosa_laevigata RLG00000019536
rosa_multiflora Rmu_sc0015604.1_g000002
rosa_roxburghii Rroxscaffold_2G00108240
rosa_rugosa Rorug02G0331300
rosa_samantha Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana Rw2G031230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 1143
AccB1I GGYRCC 2 cut(s) 517, 530
AccI GTMKAC 1 cut(s) 1064
AccII CGCG 1 cut(s) 578
AciI CCGC 4 cut(s) 525, 528, 755, 1121
AcoI YGGCCR 2 cut(s) 414, 1090
AcsI RAATTY 2 cut(s) 249, 1174
AcyI GRCGYC 2 cut(s) 518, 531
AfaI GTAC 3 cut(s) 539, 560, 653
AfiI CCNNNNNNNGG 6 cut(s) 310, 418, 419, 527, 687, 1135
AflIII ACRYGT 3 cut(s) 83, 576, 818
AgsI TTSAA 5 cut(s) 127, 447, 1052, 1081, 1108
AjnI CCWGG 1 cut(s) 686
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 985, 1017
AluBI AGCT 8 cut(s) 104, 123, 382, 571, 699, 739, 763, 847
AluI AGCT 8 cut(s) 104, 123, 382, 571, 699, 739, 763, 847
Alw26I GTCTC 2 cut(s) 287, 872
AoxI GGCC 3 cut(s) 301, 414, 1090
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 2 cut(s) 249, 1174
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
Asp700I GAANNNNTTC 1 cut(s) 469
AspLEI GCGC 4 cut(s) 74, 520, 533, 789
AspS9I GGNCC 2 cut(s) 313, 979
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 4 cut(s) 149, 436, 863, 880
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 2 cut(s) 313, 979
BanI GGYRCC 2 cut(s) 517, 530
BauI CACGAG 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 391
BccI CCATC 6 cut(s) 332, 598, 653, 865, 950, 1134
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 688
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 287, 872
BfaI CTAG 1 cut(s) 888
BfoI RGCGCY 2 cut(s) 521, 534
BfuAI ACCTGC 1 cut(s) 1143
BisI GCNGC 3 cut(s) 380, 526, 529
BlpI GCTNAGC 1 cut(s) 740
BlsI GCNGC 3 cut(s) 381, 527, 530
Bme1390I CCNGG 2 cut(s) 413, 688
Bme18I GGWCC 2 cut(s) 313, 979
BmgT120I GGNCC 2 cut(s) 313, 979
BmiI GGNNCC 4 cut(s) 519, 532, 885, 980
BmrFI CCNGG 2 cut(s) 413, 688
BmsI GCATC 2 cut(s) 106, 588
BpmI CTGGAG 1 cut(s) 785
Bpu10I CCTNAGC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 2 cut(s) 496, 537
BsaHI GRCGYC 2 cut(s) 518, 531
BsaJI CCNNGG 4 cut(s) 75, 164, 417, 687
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 6 cut(s) 310, 418, 419, 527, 687, 1135
Bse118I RCCGGY 1 cut(s) 1088
Bse1I ACTGG 2 cut(s) 98, 245
Bse3DI GCAATG 4 cut(s) 176, 478, 796, 1151
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 4 cut(s) 75, 164, 417, 687
BseGI GGATG 4 cut(s) 513, 681, 906, 1145
BseLI CCNNNNNNNGG 6 cut(s) 310, 418, 419, 527, 687, 1135
BseMI GCAATG 4 cut(s) 176, 478, 796, 1151
BseMII CTCAG 2 cut(s) 581, 731
BseNI ACTGG 2 cut(s) 98, 245
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 3 cut(s) 303, 416, 1092
BshNI GGYRCC 2 cut(s) 517, 530
BsiEI CGRYCG 1 cut(s) 417
BsiSI CCGG 2 cut(s) 413, 1089
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 829, 992
BslI CCNNNNNNNGG 6 cut(s) 310, 418, 419, 527, 687, 1135
BsmAI GTCTC 2 cut(s) 287, 872
BsmBI CGTCTC 2 cut(s) 287, 872
BsmFI GGGAC 2 cut(s) 829, 992
BsnI GGCC 3 cut(s) 303, 416, 1092
Bsp119I TTCGAA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 22
Bsp1720I GCTNAGC 1 cut(s) 740
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 525, 528, 755, 1121
BspANI GGCC 3 cut(s) 303, 416, 1092
BspCNI CTCAG 2 cut(s) 580, 732
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 519, 532, 885, 980
BspMI ACCTGC 1 cut(s) 1143
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 517, 530
BsrDI GCAATG 4 cut(s) 176, 478, 796, 1151
BsrFI RCCGGY 1 cut(s) 1088
BsrI ACTGG 2 cut(s) 98, 245
BssAI RCCGGY 1 cut(s) 1088
BssECI CCNNGG 4 cut(s) 75, 164, 417, 687
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 2 cut(s) 518, 531
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 75, 164
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 5 cut(s) 334, 628, 656, 728, 883
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 2 cut(s) 518, 531
BstBAI YACGTR 2 cut(s) 496, 537
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 70, 746
BstDEI CTNAG 3 cut(s) 295, 567, 740
BstDSI CCRYGG 2 cut(s) 164, 417
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 4 cut(s) 513, 681, 906, 1145
BstFNI CGCG 1 cut(s) 578
BstH2I RGCGCY 2 cut(s) 521, 534
BstHHI GCGC 4 cut(s) 74, 520, 533, 789
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 287, 872
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 4 cut(s) 204, 376, 745, 784
BstNI CCWGG 1 cut(s) 688
BstNSI RCATGY 2 cut(s) 87, 822
BstSCI CCNGG 2 cut(s) 411, 686
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 414
BsuRI GGCC 3 cut(s) 303, 416, 1092
BtgI CCRYGG 2 cut(s) 164, 417
BtsCI GGATG 4 cut(s) 513, 681, 906, 1145
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 1143
Cac8I GCNNGC 2 cut(s) 70, 746
CfoI GCGC 4 cut(s) 74, 520, 533, 789
Cfr10I RCCGGY 1 cut(s) 1088
Cfr13I GGNCC 2 cut(s) 313, 979
CseI GACGC 2 cut(s) 556, 584
Csp6I GTAC 3 cut(s) 538, 559, 652
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 3 cut(s) 84, 165, 819
CviQI GTAC 3 cut(s) 538, 559, 652
DdeI CTNAG 3 cut(s) 295, 567, 740
DinI GGCGCC 2 cut(s) 519, 532
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 414, 1090
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 770
EclXI CGGCCG 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 75, 164
Eco147I AGGCCT 1 cut(s) 303
Eco32I GATATC 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 313, 979
Eco52I CGGCCG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 979
EcoRII CCWGG 1 cut(s) 686
EcoRV GATATC 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 75, 164
EgeI GGCGCC 2 cut(s) 519, 532
EheI GGCGCC 2 cut(s) 519, 532
ErhI CCWWGG 2 cut(s) 75, 164
Esp3I CGTCTC 2 cut(s) 287, 872
FaeI CATG 3 cut(s) 87, 168, 822
FaqI GGGAC 2 cut(s) 829, 992
FatI CATG 3 cut(s) 83, 164, 818
FblI GTMKAC 1 cut(s) 1064
Fnu4HI GCNGC 3 cut(s) 380, 526, 529
FokI GGATG 4 cut(s) 520, 688, 913, 1152
Fsp4HI GCNGC 3 cut(s) 380, 526, 529
FspBI CTAG 1 cut(s) 888
FspI TGCGCA 1 cut(s) 788
GlaI GCGC 4 cut(s) 73, 519, 532, 788
GluI GCNGC 3 cut(s) 380, 526, 529
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 785
HaeII RGCGCY 2 cut(s) 521, 534
HaeIII GGCC 3 cut(s) 303, 416, 1092
HapII CCGG 2 cut(s) 413, 1089
HgaI GACGC 2 cut(s) 556, 584
HhaI GCGC 4 cut(s) 74, 520, 533, 789
Hin1I GRCGYC 2 cut(s) 518, 531
Hin1II CATG 3 cut(s) 87, 168, 822
Hin6I GCGC 4 cut(s) 72, 518, 531, 787
HinP1I GCGC 4 cut(s) 72, 518, 531, 787
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 4 cut(s) 59, 470, 489, 634
HpaII CCGG 2 cut(s) 413, 1089
HphI GGTGA 4 cut(s) 149, 436, 863, 880
Hpy166II GTNNAC 2 cut(s) 652, 1065
Hpy188I TCNGA 6 cut(s) 317, 387, 401, 464, 514, 1198
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 652, 1065
Hpy99I CGWCG 4 cut(s) 391, 550, 578, 1066
HpyAV CCTTC 4 cut(s) 293, 913, 1013, 1046
HpyCH4III ACNGT 5 cut(s) 334, 628, 656, 728, 883
HpyCH4IV ACGT 3 cut(s) 389, 495, 536
HpyCH4V TGCA 3 cut(s) 145, 354, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 376, 745, 784
HpyF3I CTNAG 3 cut(s) 295, 567, 740
HpySE526I ACGT 3 cut(s) 389, 495, 536
Hsp92I GRCGYC 2 cut(s) 518, 531
Hsp92II CATG 3 cut(s) 87, 168, 822
HspAI GCGC 4 cut(s) 72, 518, 531, 787
KasI GGCGCC 2 cut(s) 517, 530
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 6, 844
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 106, 588
MaeI CTAG 1 cut(s) 888
MaeII ACGT 3 cut(s) 389, 495, 536
MaeIII GTNAC 1 cut(s) 710
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 8 cut(s) 17, 31, 34, 37, 176, 414, 711, 1174
MfeI CAATTG 1 cut(s) 341
MluCI AATT 7 cut(s) 249, 276, 341, 585, 893, 1132, 1174
MluI ACGCGT 1 cut(s) 576
Mly113I GGCGCC 2 cut(s) 518, 531
MlyI GAGTC 2 cut(s) 53, 628
MmeI TCCRAC 6 cut(s) 57, 340, 410, 492, 710, 994
MroXI GAANNNNTTC 1 cut(s) 469
MseI TTAA 3 cut(s) 392, 701, 1201
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 2 cut(s) 413, 1089
MspR9I CCNGG 2 cut(s) 413, 688
MunI CAATTG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 688
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 204, 376, 745, 784
NarI GGCGCC 2 cut(s) 518, 531
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 164
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 87, 168, 822
NlaIV GGNNCC 4 cut(s) 519, 532, 885, 980
NmuCI GTSAC 1 cut(s) 710
NsbI TGCGCA 1 cut(s) 788
NspI RCATGY 2 cut(s) 87, 822
NspV TTCGAA 1 cut(s) 187
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 2 cut(s) 83, 818
PcsI WCGNNNNNNNCGW 2 cut(s) 542, 1070
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 470, 489
Pfl23II CGTACG 1 cut(s) 537
PkrI GCNGC 3 cut(s) 381, 527, 530
PleI GAGTC 2 cut(s) 53, 628
PluTI GGCGCC 2 cut(s) 521, 534
PpsI GAGTC 2 cut(s) 53, 628
Ppu21I YACGTR 2 cut(s) 496, 537
PpuMI RGGWCCY 1 cut(s) 979
PscI ACATGT 2 cut(s) 83, 818
Psp5II RGGWCCY 1 cut(s) 979
Psp6I CCWGG 1 cut(s) 686
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 686
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 4 cut(s) 519, 532, 885, 980
PspPI GGNCC 2 cut(s) 313, 979
PspPPI RGGWCCY 1 cut(s) 979
RsaI GTAC 3 cut(s) 539, 560, 653
RsaNI GTAC 3 cut(s) 538, 559, 652
RseI CAYNNNNRTG 1 cut(s) 455
SalI GTCGAC 1 cut(s) 1063
SaqAI TTAA 3 cut(s) 392, 701, 1201
SatI GCNGC 3 cut(s) 380, 526, 529
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 313, 979
SchI GAGTC 2 cut(s) 53, 628
ScrFI CCNGG 2 cut(s) 413, 688
SfaNI GCATC 2 cut(s) 106, 588
SfoI GGCGCC 2 cut(s) 519, 532
SfuI TTCGAA 1 cut(s) 187
SinI GGWCC 2 cut(s) 313, 979
SmiMI CAYNNNNRTG 1 cut(s) 455
Sse9I AATT 7 cut(s) 249, 276, 341, 585, 893, 1132, 1174
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 4 cut(s) 525, 528, 755, 1121
SspDI GGCGCC 2 cut(s) 517, 530
SspMI CTAG 1 cut(s) 888
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 411, 686
StyI CCWWGG 2 cut(s) 75, 164
TaaI ACNGT 5 cut(s) 334, 628, 656, 728, 883
TaiI ACGT 3 cut(s) 392, 498, 539
TaqI TCGA 4 cut(s) 187, 573, 596, 1064
TasI AATT 7 cut(s) 249, 276, 341, 585, 893, 1132, 1174
TatI WGTACW 1 cut(s) 651
TauI GCSGC 2 cut(s) 528, 531
TfiI GAWTC 2 cut(s) 470, 489
Tru1I TTAA 3 cut(s) 392, 701, 1201
Tru9I TTAA 3 cut(s) 392, 701, 1201
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 5 cut(s) 160, 261, 462, 467, 1167
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 2 cut(s) 313, 979
XagI CCTNNNNNAGG 1 cut(s) 685
XapI RAATTY 2 cut(s) 249, 1174
XceI RCATGY 2 cut(s) 87, 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.