Rh2DG405400

Protein UNUSUAL FLORAL

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
58909322 .. 58910473
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG405400.1

Sequence Viewer

Length: 1152 bp
ATGTGGAGCGACCTCCCCTTTGATCTTCTCTCCAACATCTTCATCTTCCTCTCCCCCGACTCTTTTGCTTGCGCCAAGGCAGCATGTCGAAACTGGCATCAAGCTTGTGCCTCCACACCGAGCTTCAAGAACCCCTTTTTGTTGCAGAAGCAACTTCACCCTCCATGGTTCATAGCATTGCCTCTTCGAAACAACAGCCTTTCTTGCTATGCTCACAATCCAATCAACACCACCACCAACAACTGGTATGAAATTTCTTTAGATTTCTTACCCCACCCAATTCGTCTCGTGGCTCACTTAGAAGGCCTCCTCTTGGTCCGACCCTCGATCTCTACCGTTCTCCAATTGGGTGTCTGCAACCCATTTACAAGGCAATACAAGCAGCTTCCGACATTAAACATCAGAAGAACCAACCCGGCCGTGGGGGTGATATCACTCCCAGCATTTTCAAACACTAAATTAATGTTCGGAACAGATTCATTTCATTGCTTCGGAATCTACGTGGCTGGTGGGATGTCGGAGGCGCCCCGCGGCGGCGCCACGTACCAGCCGACGCTGGAAATGTACGACCCTCAACTCGACTCGTGGCGAGTTGTCGGTTCCATGCCGATGGAGTTTGCAGTGAGGTTAACAGTCTGGACTCCAAAGGAGAGTGTGTACTGTGATGGTGTGCTGTATTGGATGACCTCTGCCAGGGCATACAGCTTAATGGGGTGTGACATTTCTTCTAACAGTTGGAGAGAGCTGAGCGTGCCAATGGCGGACAAGCTGGAGTTTGCTGTGCTGGTTCTGCGCAATGGGAGGCTGACACTTGTGGGAGGGACATGTGCTTTGGGGGTTTGTATATGGGAGCTTGTGGAGGGAGGGAGTTGGGTGATGGTTGAGACGGTTCCTAGTGAATTGGGGATGAGGTTTATAGGGGAGAAGGGAAGTTGGGATGGAACAAAGTGTGTGGGGAGTGATGGGACGATTTACTTGTATAGGGACCTTTGGGCAGGAATGGTGGTTTGGAGGGAAGTTGGAGAAGGGAATAGTAAGTGGGAATGGTATTGGATTGAAGGGTGTTCGTCGATTAGAGGTAAACAAGTGAGAAATTTGCAAATAAAGGGAGTTCTTATGCATCCTAATCTTGTACCCTCATCCAATTTCTAA

Protein Analysis

383

Amino Acids

42.99

Weight (kDa)

7.51

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 39 2.8e-07 F-box-like
F-box PF00646 2 - 42 1.3e-06 F-box domain
FBA_1 PF07734 88 - 272 1.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016893)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30250
malus_domestica MD17G1206200.v1.1
prunus_persica Prupe.3G081200_v2.0.a1
pyrus_communis pycom17g20940
rosa_chinensis RchiOBHm_Chr2g0136491
rosa_laevigata RLG00000019536
rosa_multiflora Rmu_sc0015604.1_g000002
rosa_roxburghii Rroxscaffold_2G00108240
rosa_rugosa Rorug02G0331300
rosa_samantha Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana Rw2G031230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 794
AccB1I GGYRCC 2 cut(s) 523, 536
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 1 cut(s) 531
AciI CCGC 4 cut(s) 529, 531, 534, 761
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 2 cut(s) 252, 1093
AcyI GRCGYC 2 cut(s) 524, 537
AfaI GTAC 4 cut(s) 545, 566, 659, 1134
AfiI CCNNNNNNNGG 6 cut(s) 243, 313, 421, 422, 533, 693
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 3 cut(s) 127, 450, 1058
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 991, 1023
AluBI AGCT 7 cut(s) 104, 123, 385, 705, 745, 769, 853
AluI AGCT 7 cut(s) 104, 123, 385, 705, 745, 769, 853
Alw26I GTCTC 2 cut(s) 290, 878
AoxI GGCC 2 cut(s) 304, 417
ApeKI GCWGC 2 cut(s) 80, 382
ApoI RAATTY 2 cut(s) 252, 1093
ArsI GACNNNNNNTTYG 3 cut(s) 34, 814, 846
AseI ATTAAT 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 4 cut(s) 74, 526, 539, 795
AspS9I GGNCC 2 cut(s) 316, 985
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 149, 439, 886
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 2 cut(s) 316, 985
BanI GGYRCC 2 cut(s) 523, 536
BauI CACGAG 2 cut(s) 287, 583
BbvI GCAGC 2 cut(s) 92, 394
BccI CCATC 5 cut(s) 604, 659, 871, 932, 956
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 694
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 290, 878
BfaI CTAG 1 cut(s) 894
BfoI RGCGCY 2 cut(s) 527, 540
BisI GCNGC 4 cut(s) 81, 383, 532, 535
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 4 cut(s) 82, 384, 533, 536
Bme1390I CCNGG 2 cut(s) 416, 694
Bme18I GGWCC 2 cut(s) 316, 985
BmgT120I GGNCC 2 cut(s) 316, 985
BmiI GGNNCC 5 cut(s) 525, 538, 601, 891, 986
BmrFI CCNGG 2 cut(s) 416, 694
BmsI GCATC 2 cut(s) 106, 1129
BpmI CTGGAG 1 cut(s) 791
Bpu1102I GCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 416
BsaAI YACGTR 2 cut(s) 502, 543
BsaHI GRCGYC 2 cut(s) 524, 537
BsaJI CCNNGG 5 cut(s) 75, 164, 420, 529, 693
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 313, 421, 422, 533, 693
Bse1I ACTGG 2 cut(s) 98, 248
Bse3DI GCAATG 3 cut(s) 176, 484, 802
BseBI CCWGG 1 cut(s) 694
BseDI CCNNGG 5 cut(s) 75, 164, 420, 529, 693
BseGI GGATG 6 cut(s) 519, 687, 912, 943, 1120, 1139
BseLI CCNNNNNNNGG 6 cut(s) 243, 313, 421, 422, 533, 693
BseMI GCAATG 3 cut(s) 176, 484, 802
BseMII CTCAG 1 cut(s) 737
BseNI ACTGG 2 cut(s) 98, 248
BseRI GAGGAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 92, 394
BseYI CCCAGC 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 531
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 2 cut(s) 306, 419
BshNI GGYRCC 2 cut(s) 523, 536
BsiEI CGRYCG 1 cut(s) 420
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 3 cut(s) 835, 979, 998
BslI CCNNNNNNNGG 6 cut(s) 243, 313, 421, 422, 533, 693
BsmAI GTCTC 2 cut(s) 290, 878
BsmBI CGTCTC 2 cut(s) 290, 878
BsmFI GGGAC 3 cut(s) 835, 979, 998
BsnI GGCC 2 cut(s) 306, 419
Bsp119I TTCGAA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 22, 327
Bsp1720I GCTNAGC 1 cut(s) 746
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 529, 531, 534, 761
BspANI GGCC 2 cut(s) 306, 419
BspCNI CTCAG 1 cut(s) 738
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 5 cut(s) 525, 538, 601, 891, 986
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 523, 536
BsrDI GCAATG 3 cut(s) 176, 484, 802
BsrI ACTGG 2 cut(s) 98, 248
BssECI CCNNGG 5 cut(s) 75, 164, 420, 529, 693
BssMI GATC 2 cut(s) 22, 327
BssNI GRCGYC 2 cut(s) 524, 537
BssSI CACGAG 2 cut(s) 287, 583
BssT1I CCWWGG 2 cut(s) 75, 164
Bst2BI CACGAG 2 cut(s) 287, 583
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 5 cut(s) 337, 634, 662, 734, 889
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 2 cut(s) 524, 537
BstBAI YACGTR 2 cut(s) 502, 543
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 70, 752
BstDEI CTNAG 2 cut(s) 298, 746
BstDSI CCRYGG 3 cut(s) 164, 420, 529
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 6 cut(s) 519, 687, 912, 943, 1120, 1139
BstFNI CGCG 1 cut(s) 531
BstH2I RGCGCY 2 cut(s) 527, 540
BstHHI GCGC 4 cut(s) 74, 526, 539, 795
BstKTI GATC 2 cut(s) 25, 330
BstMAI GTCTC 2 cut(s) 290, 878
BstMBI GATC 2 cut(s) 22, 327
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 5 cut(s) 80, 204, 379, 751, 790
BstNI CCWGG 1 cut(s) 694
BstNSI RCATGY 2 cut(s) 87, 828
BstSCI CCNGG 2 cut(s) 414, 692
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 92, 394
BstXI CCANNNNNNTGG 1 cut(s) 610
BstZI CGGCCG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 306, 419
BtgI CCRYGG 3 cut(s) 164, 420, 529
BtsCI GGATG 6 cut(s) 519, 687, 912, 943, 1120, 1139
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 70, 752
CfoI GCGC 4 cut(s) 74, 526, 539, 795
Cfr13I GGNCC 2 cut(s) 316, 985
Cfr42I CCGCGG 1 cut(s) 532
CseI GACGC 1 cut(s) 562
Csp6I GTAC 4 cut(s) 544, 565, 658, 1133
CspCI CAANNNNNGTGG 2 cut(s) 933, 968
CviAII CATG 4 cut(s) 84, 165, 604, 825
CviQI GTAC 4 cut(s) 544, 565, 658, 1133
DdeI CTNAG 2 cut(s) 298, 746
DinI GGCGCC 2 cut(s) 525, 538
DpnI GATC 2 cut(s) 24, 329
DpnII GATC 2 cut(s) 22, 327
EaeI YGGCCR 1 cut(s) 417
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 776
EclXI CGGCCG 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 75, 164
Eco147I AGGCCT 1 cut(s) 306
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 316, 985
Eco52I CGGCCG 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 692
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 75, 164
EcoT22I ATGCAT 1 cut(s) 1122
EgeI GGCGCC 2 cut(s) 525, 538
EheI GGCGCC 2 cut(s) 525, 538
ErhI CCWWGG 2 cut(s) 75, 164
Esp3I CGTCTC 2 cut(s) 290, 878
FaeI CATG 4 cut(s) 87, 168, 607, 828
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 3 cut(s) 835, 979, 998
FatI CATG 4 cut(s) 83, 164, 603, 824
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 81, 383, 532, 535
FokI GGATG 6 cut(s) 526, 694, 919, 950, 1107, 1126
Fsp4HI GCNGC 4 cut(s) 81, 383, 532, 535
FspBI CTAG 1 cut(s) 894
FspI TGCGCA 1 cut(s) 794
GlaI GCGC 4 cut(s) 73, 525, 538, 794
GluI GCNGC 4 cut(s) 81, 383, 532, 535
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 1 cut(s) 791
HaeII RGCGCY 2 cut(s) 527, 540
HaeIII GGCC 2 cut(s) 306, 419
HapII CCGG 1 cut(s) 416
HgaI GACGC 1 cut(s) 562
HhaI GCGC 4 cut(s) 74, 526, 539, 795
Hin1I GRCGYC 2 cut(s) 524, 537
Hin1II CATG 4 cut(s) 87, 168, 607, 828
Hin6I GCGC 4 cut(s) 72, 524, 537, 793
HinP1I GCGC 4 cut(s) 72, 524, 537, 793
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 5 cut(s) 59, 476, 495, 581, 640
HpaI GTTAAC 1 cut(s) 630
HpaII CCGG 1 cut(s) 416
HphI GGTGA 3 cut(s) 149, 439, 886
Hpy166II GTNNAC 3 cut(s) 630, 658, 1082
Hpy188I TCNGA 6 cut(s) 320, 390, 404, 470, 494, 520
Hpy188III TCNNGA 2 cut(s) 127, 637
Hpy8I GTNNAC 3 cut(s) 630, 658, 1082
Hpy99I CGWCG 2 cut(s) 556, 1072
HpyAV CCTTC 4 cut(s) 296, 919, 1019, 1052
HpyCH4III ACNGT 5 cut(s) 337, 634, 662, 734, 889
HpyCH4IV ACGT 2 cut(s) 501, 542
HpyCH4V TGCA 5 cut(s) 145, 357, 620, 1099, 1120
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 204, 379, 751, 790
HpyF3I CTNAG 2 cut(s) 298, 746
HpySE526I ACGT 2 cut(s) 501, 542
Hsp92I GRCGYC 2 cut(s) 524, 537
Hsp92II CATG 4 cut(s) 87, 168, 607, 828
HspAI GCGC 4 cut(s) 72, 524, 537, 793
KasI GGCGCC 2 cut(s) 523, 536
KspAI GTTAAC 1 cut(s) 630
KspI CCGCGG 1 cut(s) 532
Kzo9I GATC 2 cut(s) 22, 327
LmnI GCTCC 2 cut(s) 6, 850
Lsp1109I GCAGC 2 cut(s) 92, 394
LweI GCATC 2 cut(s) 106, 1129
MaeI CTAG 1 cut(s) 894
MaeII ACGT 2 cut(s) 501, 542
MaeIII GTNAC 1 cut(s) 716
MalI GATC 2 cut(s) 24, 329
MboI GATC 2 cut(s) 22, 327
MboII GAAGA 6 cut(s) 17, 31, 37, 176, 417, 717
MfeI CAATTG 1 cut(s) 344
MluCI AATT 7 cut(s) 252, 279, 344, 458, 899, 1093, 1144
Mly113I GGCGCC 2 cut(s) 524, 537
MlyI GAGTC 3 cut(s) 53, 575, 634
MmeI TCCRAC 6 cut(s) 57, 343, 413, 498, 716, 1000
Mph1103I ATGCAT 1 cut(s) 1122
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 4 cut(s) 395, 461, 629, 707
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 416, 694
MunI CAATTG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 694
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 5 cut(s) 80, 204, 379, 751, 790
NarI GGCGCC 2 cut(s) 524, 537
NciI CCSGG 1 cut(s) 416
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 22, 327
NlaIII CATG 4 cut(s) 87, 168, 607, 828
NlaIV GGNNCC 5 cut(s) 525, 538, 601, 891, 986
NmuCI GTSAC 1 cut(s) 716
NsbI TGCGCA 1 cut(s) 794
NsiI ATGCAT 1 cut(s) 1122
NspI RCATGY 2 cut(s) 87, 828
NspV TTCGAA 1 cut(s) 187
PceI AGGCCT 1 cut(s) 306
PciI ACATGT 1 cut(s) 824
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 548
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 476, 495
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 4 cut(s) 82, 384, 533, 536
PleI GAGTC 3 cut(s) 53, 575, 634
PluTI GGCGCC 2 cut(s) 527, 540
PpsI GAGTC 3 cut(s) 53, 575, 634
Ppu21I YACGTR 2 cut(s) 502, 543
PpuMI RGGWCCY 1 cut(s) 985
PscI ACATGT 1 cut(s) 824
PshBI ATTAAT 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 692
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 5 cut(s) 525, 538, 601, 891, 986
PspPI GGNCC 2 cut(s) 316, 985
PspPPI RGGWCCY 1 cut(s) 985
RsaI GTAC 4 cut(s) 545, 566, 659, 1134
RsaNI GTAC 4 cut(s) 544, 565, 658, 1133
RseI CAYNNNNRTG 1 cut(s) 608
SacII CCGCGG 1 cut(s) 532
SaqAI TTAA 4 cut(s) 395, 461, 629, 707
SatI GCNGC 4 cut(s) 81, 383, 532, 535
Sau3AI GATC 2 cut(s) 22, 327
Sau96I GGNCC 2 cut(s) 316, 985
SchI GAGTC 3 cut(s) 53, 575, 634
ScrFI CCNGG 2 cut(s) 416, 694
SfaNI GCATC 2 cut(s) 106, 1129
SfoI GGCGCC 2 cut(s) 525, 538
Sfr303I CCGCGG 1 cut(s) 532
SfuI TTCGAA 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 532
SinI GGWCC 2 cut(s) 316, 985
SmiMI CAYNNNNRTG 1 cut(s) 608
Sse9I AATT 7 cut(s) 252, 279, 344, 458, 899, 1093, 1144
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 4 cut(s) 529, 531, 534, 761
SspDI GGCGCC 2 cut(s) 523, 536
SspMI CTAG 1 cut(s) 894
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 414, 692
StyI CCWWGG 2 cut(s) 75, 164
TaaI ACNGT 5 cut(s) 337, 634, 662, 734, 889
TaiI ACGT 2 cut(s) 504, 545
TaqI TCGA 5 cut(s) 88, 187, 326, 579, 1070
TasI AATT 7 cut(s) 252, 279, 344, 458, 899, 1093, 1144
TatI WGTACW 1 cut(s) 657
TauI GCSGC 2 cut(s) 534, 537
TfiI GAWTC 2 cut(s) 476, 495
Tru1I TTAA 4 cut(s) 395, 461, 629, 707
Tru9I TTAA 4 cut(s) 395, 461, 629, 707
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 80, 382
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 31, 160, 264, 468, 473
TspRI CASTG 1 cut(s) 627
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 316, 985
VspI ATTAAT 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 691
XapI RAATTY 2 cut(s) 252, 1093
XceI RCATGY 2 cut(s) 87, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 1 cut(s) 894
Zsp2I ATGCAT 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.