Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016893

Physical Location & Seq

Genomic Coordinates Forward (+)

24934745 .. 24935914

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1206200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTGGAACAACCTCCCCTGCGACCTCCTCACCAACATCTTCTCCTTCCTCTCCGCCGACTCTTTTGCATGCGCCAAGTCGACATGCAGACACTGGCAAGCCTGCGCCTCCTCCGCAGCCGGTAACTACCCGTTTTTGCTGCAGAATCATCACCCGCCTTGGTTCGTAGCTTTGCCACTGCACGACCATGGTGCTCTATGCAGCTGCTATGCCCTCAATCCAAGTAACAACAACTGGTATGTTCTCTCCATGGATTTCTTACCAGCCCCAGTTAGGTATGTCGGCCCACTGGACAGCTTCATCTTGCTAAGGCCCACAGTTTCCACATTTCTCCAATTGGGTCTGTGCAACCCCTTCACAAGGCAATACAAGCCCTTCCCAAAGTTGAACATCAAAAGGACCAACCCAGCTGTTGGTGTTGTCCCAGTCAGGTCAGTCGCGTCGCCGAACAACTCATTATTCTGTGAAACAAATGCTACCCTTCAAAATTCGTGCTTTAGTTCTAGGATCTACGTGGCAGGCGGGATGTCTGAGGCATCCCGCGGTGGTGCCACGTATGAGCCTACATTGGAAATGTACGATCCGCAGCTTGACATGTGGTGGGTCGTCGGGTCAATGCCGATGGAGTTTGCTGTGAGGCTAACAGTTTGGACCCCAAAGGAGAGTGTGTATTGTGATGGGGTGCTGTATTGGATGACTTCGGCCCGGGCCTATAGCCTAATGGGCTACGAGATTGGGTCAAACACTTGGAGGGAGCTGAGTGTCCCAATGGCAGACAAGCTGGAATTTGCTGTGCTGGTGCTGCGCAATTGGAGGTTGACACTTGTTGGCGGCGGAGTGTGTGTTTCGGGTGCTTGTGTATGGGAACTTGGGGAGGGAGATATTTGGGTATTGGTCGAGAAGGTACCTAGTGAAATGGGGATGAAATTGATGGGGGATAGGGGAAGTTGGGCGAGTACAAAATGTGTAGGTGGTGATGGGGCTATTTATTTGTATAGAGATCTTTGGTCAGGAATGGTAGTTTGGAGGGAAGTTGGGGATAAGAGTAGGAGTCAATGGGAATGGTATTGGATTGAAGGGTGTTCTTCAATTAGAGGAAAACAAGTGAGGAACTTGCAAATTAAGGGAGTTCTTATATACCCTAATCTTGTACCCTCATTCATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

390

Amino Acids

43.66

Weight (kDa)

7.44

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 38	2.3e-08	F-box-like
F-box	PF00646	2 - 38	3e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016893)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30250
malus_domestica	MD17G1206200.v1.1
prunus_persica	Prupe.3G081200_v2.0.a1
pyrus_communis	pycom17g20940
rosa_chinensis	RchiOBHm_Chr2g0136491
rosa_laevigata	RLG00000019536
rosa_multiflora	Rmu_sc0015604.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108240
rosa_rugosa	Rorug02G0331300
rosa_samantha	Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana	Rw2G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	806
Acc65I	GGTACC	1 cut(s)	904
AccB1I	GGYRCC	2 cut(s)	548, 904
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	2 cut(s)	440, 543
AciI	CCGC	9 cut(s)	54, 114, 155, 522, 541, 543, 584, 831, 834
AclWI	GGATC	2 cut(s)	515, 575
AcsI	RAATTY	2 cut(s)	487, 785
AfaI	GTAC	4 cut(s)	578, 906, 958, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	273, 360, 413
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	4 cut(s)	388, 485, 1076, 1089
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	7 cut(s)	170, 204, 297, 410, 589, 757, 781
AluI	AGCT	7 cut(s)	170, 204, 297, 410, 589, 757, 781
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	515, 575
AlwNI	CAGNNNCTG	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	4 cut(s)	283, 311, 702, 708
ApeKI	GCWGC	6 cut(s)	116, 139, 201, 204, 586, 802
ApoI	RAATTY	2 cut(s)	487, 785
Asp718I	GGTACC	1 cut(s)	904
AspLEI	GCGC	3 cut(s)	74, 107, 807
AspS9I	GGNCC	6 cut(s)	284, 312, 399, 651, 703, 708
AsuC2I	CCSGG	2 cut(s)	706, 707
AsuHPI	GGTGA	3 cut(s)	22, 143, 986
AvaI	CYCGRG	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	399, 651
BanI	GGYRCC	2 cut(s)	548, 904
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	6 cut(s)	126, 128, 191, 213, 598, 789
BccI	CCATC	4 cut(s)	616, 671, 925, 971
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 173, 207
BcnI	CCSGG	2 cut(s)	706, 707
BfaI	CTAG	2 cut(s)	504, 909
BfmI	CTRYAG	2 cut(s)	140, 712
BglI	GCCNNNNNGGC	1 cut(s)	723
BglII	AGATCT	1 cut(s)	1000
BisI	GCNGC	7 cut(s)	117, 140, 202, 205, 587, 803, 832
BlsI	GCNGC	7 cut(s)	118, 141, 203, 206, 588, 804, 833
Bme1390I	CCNGG	2 cut(s)	706, 707
Bme18I	GGWCC	2 cut(s)	399, 651
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	6 cut(s)	284, 312, 399, 651, 703, 708
BmiI	GGNNCC	3 cut(s)	550, 653, 906
BmrFI	CCNGG	2 cut(s)	706, 707
BmrI	ACTGGG	2 cut(s)	263, 419
BmsI	GCATC	1 cut(s)	545
BmuI	ACTGGG	2 cut(s)	263, 419
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	706, 707
BsaAI	YACGTR	2 cut(s)	514, 555
BsaJI	CCNNGG	5 cut(s)	158, 187, 249, 541, 705
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 653, 683, 828, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 360, 413
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	5 cut(s)	98, 239, 269, 294, 425
BseDI	CCNNGG	5 cut(s)	158, 187, 249, 541, 705
BseGI	GGATG	4 cut(s)	531, 536, 699, 927
BseLI	CCNNNNNNNGG	3 cut(s)	273, 360, 413
BseMII	CTCAG	2 cut(s)	522, 749
BseNI	ACTGG	5 cut(s)	98, 239, 269, 294, 425
BseRI	GAGGAG	2 cut(s)	17, 100
BseXI	GCAGC	6 cut(s)	126, 128, 191, 213, 598, 789
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	440, 543
BshFI	GGCC	4 cut(s)	285, 313, 704, 710
BshNI	GGYRCC	2 cut(s)	548, 904
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	120, 706
BslFI	GGGAC	2 cut(s)	407, 749
BslI	CCNNNNNNNGG	3 cut(s)	273, 360, 413
BsmFI	GGGAC	2 cut(s)	407, 749
BsnI	GGCC	4 cut(s)	285, 313, 704, 710
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	507, 580, 1000
Bsp19I	CCATGG	2 cut(s)	187, 249
BspACI	CCGC	9 cut(s)	54, 114, 155, 522, 541, 543, 584, 831, 834
BspANI	GGCC	4 cut(s)	285, 313, 704, 710
BspCNI	CTCAG	2 cut(s)	523, 750
BspFNI	CGCG	2 cut(s)	440, 543
BspLI	GGNNCC	3 cut(s)	550, 653, 906
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	2 cut(s)	515, 575
BspT107I	GGYRCC	2 cut(s)	548, 904
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	5 cut(s)	98, 239, 269, 294, 425
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	5 cut(s)	158, 187, 249, 541, 705
BssMI	GATC	3 cut(s)	507, 580, 1000
BssT1I	CCWWGG	3 cut(s)	158, 187, 249
Bst4CI	ACNGT	2 cut(s)	319, 646
BstBAI	YACGTR	2 cut(s)	514, 555
BstC8I	GCNNGC	4 cut(s)	70, 99, 103, 520
BstDEI	CTNAG	3 cut(s)	308, 531, 758
BstDSI	CCRYGG	3 cut(s)	187, 249, 541
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	4 cut(s)	531, 536, 699, 927
BstFNI	CGCG	2 cut(s)	440, 543
BstHHI	GCGC	3 cut(s)	74, 107, 807
BstKTI	GATC	3 cut(s)	510, 583, 1003
BstMBI	GATC	3 cut(s)	507, 580, 1000
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 370, 723, 802
BstNSI	RCATGY	3 cut(s)	72, 87, 598
BstSCI	CCNGG	2 cut(s)	704, 705
BstSFI	CTRYAG	2 cut(s)	140, 712
BstUI	CGCG	2 cut(s)	440, 543
BstV1I	GCAGC	6 cut(s)	126, 128, 191, 213, 598, 789
BstX2I	RGATCY	2 cut(s)	507, 1000
BstYI	RGATCY	2 cut(s)	507, 1000
BsuRI	GGCC	4 cut(s)	285, 313, 704, 710
BtgI	CCRYGG	3 cut(s)	187, 249, 541
BtsCI	GGATG	4 cut(s)	531, 536, 699, 927
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	3 cut(s)	91, 176, 287
Cac8I	GCNNGC	4 cut(s)	70, 99, 103, 520
CaiI	CAGNNNCTG	1 cut(s)	93
CfoI	GCGC	3 cut(s)	74, 107, 807
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	6 cut(s)	284, 312, 399, 651, 703, 708
Cfr42I	CCGCGG	1 cut(s)	544
Cfr9I	CCCGGG	1 cut(s)	705
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	577, 905, 957, 1151
CviAII	CATG	5 cut(s)	69, 84, 188, 250, 595
CviQI	GTAC	4 cut(s)	577, 905, 957, 1151
DdeI	CTNAG	3 cut(s)	308, 531, 758
DpnI	GATC	3 cut(s)	509, 582, 1002
DpnII	GATC	3 cut(s)	507, 580, 1000
EciI	GGCGGA	2 cut(s)	43, 849
Eco130I	CCWWGG	3 cut(s)	158, 187, 249
Eco47I	GGWCC	2 cut(s)	399, 651
Eco88I	CYCGRG	1 cut(s)	705
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoT14I	CCWWGG	3 cut(s)	158, 187, 249
ErhI	CCWWGG	3 cut(s)	158, 187, 249
FaeI	CATG	5 cut(s)	72, 87, 191, 253, 598
FaqI	GGGAC	2 cut(s)	407, 749
FatI	CATG	5 cut(s)	68, 83, 187, 249, 594
FauI	CCCGC	3 cut(s)	162, 515, 548
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	7 cut(s)	117, 140, 202, 205, 587, 803, 832
FokI	GGATG	4 cut(s)	523, 538, 706, 934
Fsp4HI	GCNGC	7 cut(s)	117, 140, 202, 205, 587, 803, 832
FspBI	CTAG	2 cut(s)	504, 909
FspI	TGCGCA	1 cut(s)	806
GlaI	GCGC	3 cut(s)	73, 106, 806
GluI	GCNGC	7 cut(s)	117, 140, 202, 205, 587, 803, 832
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	4 cut(s)	285, 313, 704, 710
HapII	CCGG	2 cut(s)	120, 706
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	74, 107, 807
Hin1II	CATG	5 cut(s)	72, 87, 191, 253, 598
Hin6I	GCGC	3 cut(s)	72, 105, 805
HinP1I	GCGC	3 cut(s)	72, 105, 805
HincII	GTYRAC	2 cut(s)	81, 819
HindII	GTYRAC	2 cut(s)	81, 819
HinfI	GANTC	3 cut(s)	59, 145, 1051
HpaII	CCGG	2 cut(s)	120, 706
HphI	GGTGA	3 cut(s)	22, 143, 986
Hpy166II	GTNNAC	2 cut(s)	81, 819
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	2 cut(s)	898, 1011
Hpy8I	GTNNAC	2 cut(s)	81, 819
Hpy99I	CGWCG	2 cut(s)	445, 611
HpyAV	CCTTC	6 cut(s)	55, 364, 385, 491, 895, 1070
HpyCH4III	ACNGT	2 cut(s)	319, 646
HpyCH4IV	ACGT	2 cut(s)	513, 554
HpyCH4V	TGCA	7 cut(s)	68, 87, 142, 181, 201, 348, 1117
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 370, 723, 802
HpyF3I	CTNAG	3 cut(s)	308, 531, 758
HpySE526I	ACGT	2 cut(s)	513, 554
Hsp92II	CATG	5 cut(s)	72, 87, 191, 253, 598
HspAI	GCGC	3 cut(s)	72, 105, 805
KpnI	GGTACC	1 cut(s)	908
KspI	CCGCGG	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	507, 580, 1000
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	6 cut(s)	126, 128, 191, 213, 598, 789
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	504, 909
MaeII	ACGT	2 cut(s)	513, 554
MaeIII	GTNAC	2 cut(s)	122, 224
MalI	GATC	3 cut(s)	509, 582, 1002
MboI	GATC	3 cut(s)	507, 580, 1000
MboII	GAAGA	2 cut(s)	31, 1077
MfeI	CAATTG	2 cut(s)	335, 808
MflI	RGATCY	2 cut(s)	507, 1000
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	7 cut(s)	335, 487, 785, 808, 926, 1089, 1119
MlyI	GAGTC	2 cut(s)	53, 1060
MseI	TTAA	1 cut(s)	1122
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	3 cut(s)	204, 410, 543
MspI	CCGG	2 cut(s)	120, 706
MspR9I	CCNGG	2 cut(s)	706, 707
MunI	CAATTG	2 cut(s)	335, 808
MvnI	CGCG	2 cut(s)	440, 543
MwoI	GCNNNNNNNGC	4 cut(s)	113, 370, 723, 802
NciI	CCSGG	2 cut(s)	706, 707
NcoI	CCATGG	2 cut(s)	187, 249
NdeII	GATC	3 cut(s)	507, 580, 1000
NlaIII	CATG	5 cut(s)	72, 87, 191, 253, 598
NlaIV	GGNNCC	3 cut(s)	550, 653, 906
NsbI	TGCGCA	1 cut(s)	806
NspI	RCATGY	3 cut(s)	72, 87, 598
PaeI	GCATGC	1 cut(s)	72
PciI	ACATGT	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	7 cut(s)	118, 141, 203, 206, 588, 804, 833
PleI	GAGTC	2 cut(s)	53, 1059
PpsI	GAGTC	2 cut(s)	53, 1059
Ppu21I	YACGTR	2 cut(s)	514, 555
PscI	ACATGT	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	550, 653, 906
PspPI	GGNCC	6 cut(s)	284, 312, 399, 651, 703, 708
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	507, 1000
PvuII	CAGCTG	2 cut(s)	204, 410
RsaI	GTAC	4 cut(s)	578, 906, 958, 1152
RsaNI	GTAC	4 cut(s)	577, 905, 957, 1151
RseI	CAYNNNNRTG	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	544
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	1122
SatI	GCNGC	7 cut(s)	117, 140, 202, 205, 587, 803, 832
Sau3AI	GATC	3 cut(s)	507, 580, 1000
Sau96I	GGNCC	6 cut(s)	284, 312, 399, 651, 703, 708
SchI	GAGTC	2 cut(s)	53, 1060
ScrFI	CCNGG	2 cut(s)	706, 707
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	2 cut(s)	140, 712
Sfr303I	CCGCGG	1 cut(s)	544
SgrBI	CCGCGG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	399, 651
SmaI	CCCGGG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	72
SrfI	GCCCGGGC	1 cut(s)	707
Sse9I	AATT	7 cut(s)	335, 487, 785, 808, 926, 1089, 1119
SsiI	CCGC	9 cut(s)	54, 114, 155, 522, 541, 543, 584, 831, 834
SspMI	CTAG	2 cut(s)	504, 909
StyD4I	CCNGG	2 cut(s)	704, 705
StyI	CCWWGG	3 cut(s)	158, 187, 249
TaaI	ACNGT	2 cut(s)	319, 646
TaiI	ACGT	2 cut(s)	516, 557
TaqI	TCGA	2 cut(s)	80, 897
TasI	AATT	7 cut(s)	335, 487, 785, 808, 926, 1089, 1119
TatI	WGTACW	1 cut(s)	956
TauI	GCSGC	1 cut(s)	834
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	1122
Tru9I	TTAA	1 cut(s)	1122
TscAI	CASTG	3 cut(s)	98, 183, 294
TseI	GCWGC	6 cut(s)	116, 139, 201, 204, 586, 802
TspDTI	ATGAA	3 cut(s)	289, 938, 1150
TspMI	CCCGGG	1 cut(s)	705
TspRI	CASTG	3 cut(s)	98, 183, 294
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	399, 651
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	487, 785
XceI	RCATGY	3 cut(s)	72, 87, 598
XmaI	CCCGGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	504, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.