Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016893

Physical Location & Seq

Genomic Coordinates Forward (+)

41054387 .. 41056398

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCCATAGAGGAACTCAGCAAAATGGTTGAAGCATATCCAATGAAAGGTGGAGATGGACCCAACAGCTATGCCAAGAACTCCAGTTACCAGAAAGGAGTTGCAGGTGCTGCCCAAGAAGTTGTGAACAGGGCTATAGCAGAAAAGCTTGACATAGACAATATCACATTATCTAATTCCAACACCTTTAGCATTGCAGATTTAGGTTGCTCTGTTGGGCCAAATACGTTTTCTGCAGTTGGGAACATAATTGAAGCTGTGCAGCTCAAGTATCAAAGCCAAGTGCGGCTGCTTGATTCCCAAATCCCTCAATTTCAAGTTTTCTTTAATGATCATACCCCAAATGACTTTAACATGCTCTTCAAGTCCCTCCCTCCCAACAGACAATACTATGCAATGGGTGTGCCCGGTTCTTTCTATGGCCGTCTATTTCCTAAAGCTTCAGTTCACTTTGTTCACTCTTCTTACGCCATTCATTGGCTTTCAAGGGTACCGAAGCAGGTACTCGATAAAAATAGCCCCGCTTGGAACAAAGGACGAATCCATTACCTAAATTCCACAGATGCAGTAGTGAGGGCATTTGAAGCTCAATATGCTGAGGACATGGCGTGCTTCCTGCATGCCAGGGCACAAGAGATTGTCTGTGGAGGATTGATGGTACTTATCATTCCAGGTCACATTCAAGATACACATCATTCCCAATCTTTCAGAAATATGACCTATCAACTATTAGGGTCTTGCCTCATGGACTTGGCTAGGAAGGGATTAGTTAGCGAGGAGAAGGTAGATTCGTTTAATATACCTATTTACTATATGTCTCCCCAAGAACTGGAAGCTTCTGTAGAAAGAAATGGCTGTTTTAGCATAGAGGGTATGGAAAACTTACGTAAGATCTCAAAACTTGGCAGTGTCACCGAAAGTGCCCAACTAATTGCATCTCATGGAAGAGCTGTCATGGAGGGACTGTTCAGGCGGCAATTTGGAGATGAAATTTTAGATGAGCTCTTTGACTTGTACCGCAAGAAACTTGAAGAGAATCCCTCCATCTTTGAGTCAATGGATGCAACTCTCTTTCTTTCCGTGCTTAAACGCAACGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

367

Amino Acids

41.11

Weight (kDa)

6.08

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	56 - 364	1.5e-106	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016893)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30250
malus_domestica	MD17G1206200.v1.1
prunus_persica	Prupe.3G081200_v2.0.a1
pyrus_communis	pycom17g20940
rosa_chinensis	RchiOBHm_Chr2g0136491
rosa_laevigata	RLG00000019536
rosa_multiflora	Rmu_sc0015604.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108240
rosa_rugosa	Rorug02G0331300
rosa_samantha	Rh2AG382100 Rh2BG388700 Rh2CG368400 Rh2DG405400
rosa_wichuraiana	Rw2G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	2 cut(s)	95, 490
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccB7I	CCANNNNNTGG	2 cut(s)	477, 829
AciI	CCGC	4 cut(s)	286, 522, 973, 1018
AcoI	YGGCCR	2 cut(s)	3, 421
AcsI	RAATTY	2 cut(s)	553, 990
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	4 cut(s)	492, 504, 660, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	47, 477, 829
AgsI	TTSAA	8 cut(s)	32, 254, 317, 364, 486, 584, 683, 1031
AjnI	CCWGG	2 cut(s)	623, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	214, 246
AloI	GAACNNNNNNTCC	2 cut(s)	950, 982
AluBI	AGCT	9 cut(s)	69, 148, 257, 265, 440, 587, 836, 950, 1003
AluI	AGCT	9 cut(s)	69, 148, 257, 265, 440, 587, 836, 950, 1003
Alw21I	GWGCWC	1 cut(s)	1005
Alw26I	GTCTC	1 cut(s)	822
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	3, 218, 421
ApeKI	GCWGC	3 cut(s)	110, 262, 289
ApoI	RAATTY	2 cut(s)	553, 990
Asp718I	GGTACC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	59, 218
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	3 cut(s)	408, 631, 925
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1005
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	97, 274, 276
BccI	CCATC	3 cut(s)	50, 649, 1052
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	625, 672
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	3 cut(s)	135, 234, 840
BfuAI	ACCTGC	2 cut(s)	95, 490
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	5 cut(s)	111, 263, 287, 290, 974
BlsI	GCNGC	5 cut(s)	112, 264, 288, 291, 975
Bme1390I	CCNGG	3 cut(s)	408, 625, 672
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 218
BmiI	GGNNCC	2 cut(s)	61, 492
BmrFI	CCNGG	3 cut(s)	408, 625, 672
BmsI	GCATC	3 cut(s)	553, 944, 1051
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	887
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 477, 829
Bse1I	ACTGG	2 cut(s)	84, 834
Bse3DI	GCAATG	2 cut(s)	192, 402
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	625, 672
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	1 cut(s)	1066
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	3 cut(s)	47, 477, 829
BseMI	GCAATG	2 cut(s)	192, 402
BseMII	CTCAG	2 cut(s)	31, 588
BseNI	ACTGG	2 cut(s)	84, 834
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	3 cut(s)	408, 631, 925
BseXI	GCAGC	3 cut(s)	97, 274, 276
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	5, 220, 423
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	1005
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	2 cut(s)	352, 975
BslI	CCNNNNNNNGG	3 cut(s)	47, 477, 829
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	352, 975
BsnI	GGCC	3 cut(s)	5, 220, 423
Bsp1286I	GDGCHC	4 cut(s)	408, 631, 925, 1005
Bsp143I	GATC	2 cut(s)	331, 891
BspACI	CCGC	4 cut(s)	286, 522, 973, 1018
BspANI	GGCC	3 cut(s)	5, 220, 423
BspCNI	CTCAG	2 cut(s)	30, 589
BspLI	GGNNCC	2 cut(s)	61, 492
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	2 cut(s)	95, 490
BspQI	GCTCTTC	2 cut(s)	365, 940
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	2 cut(s)	192, 402
BsrI	ACTGG	2 cut(s)	84, 834
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	2 cut(s)	331, 891
Bst2UI	CCWGG	2 cut(s)	625, 672
Bst4CI	ACNGT	1 cut(s)	966
Bst6I	CTCTTC	4 cut(s)	365, 466, 940, 1026
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	887
BstC8I	GCNNGC	2 cut(s)	610, 621
BstDEI	CTNAG	2 cut(s)	17, 597
BstF5I	GGATG	1 cut(s)	1066
BstKTI	GATC	2 cut(s)	334, 894
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	2 cut(s)	331, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 584, 593, 861
BstNI	CCWGG	2 cut(s)	625, 672
BstNSI	RCATGY	2 cut(s)	358, 623
BstSCI	CCNGG	3 cut(s)	406, 623, 670
BstSFI	CTRYAG	3 cut(s)	135, 234, 840
BstSLI	GKGCMC	3 cut(s)	408, 631, 925
BstSNI	TACGTA	1 cut(s)	887
BstV1I	GCAGC	3 cut(s)	97, 274, 276
BstX2I	RGATCY	1 cut(s)	891
BstYI	RGATCY	1 cut(s)	891
BsuRI	GGCC	3 cut(s)	5, 220, 423
BtsCI	GGATG	1 cut(s)	1066
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	913
BveI	ACCTGC	2 cut(s)	95, 490
Cac8I	GCNNGC	2 cut(s)	610, 621
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	59, 218
Csp6I	GTAC	4 cut(s)	491, 503, 659, 1015
CviAII	CATG	6 cut(s)	355, 604, 620, 745, 941, 955
CviQI	GTAC	4 cut(s)	491, 503, 659, 1015
DdeI	CTNAG	2 cut(s)	17, 597
DpnI	GATC	2 cut(s)	333, 893
DpnII	GATC	2 cut(s)	331, 891
EaeI	YGGCCR	2 cut(s)	3, 421
Eam1104I	CTCTTC	4 cut(s)	365, 466, 940, 1026
EarI	CTCTTC	4 cut(s)	365, 466, 940, 1026
Ecl136II	GAGCTC	1 cut(s)	1003
Eco105I	TACGTA	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	1005
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	623, 670
EcoT38I	GRGCYC	1 cut(s)	1005
FaeI	CATG	6 cut(s)	358, 607, 623, 748, 944, 958
FaqI	GGGAC	2 cut(s)	352, 975
FatI	CATG	6 cut(s)	354, 603, 619, 744, 940, 954
FauI	CCCGC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	111, 263, 287, 290, 974
FokI	GGATG	1 cut(s)	1073
FriOI	GRGCYC	1 cut(s)	1005
Fsp4HI	GCNGC	5 cut(s)	111, 263, 287, 290, 974
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	5 cut(s)	111, 263, 287, 290, 974
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	5, 220, 423
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	6 cut(s)	358, 607, 623, 748, 944, 958
HindIII	AAGCTT	3 cut(s)	146, 438, 834
HinfI	GANTC	5 cut(s)	296, 540, 788, 1036, 1052
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	3 cut(s)	127, 448, 457
Hpy188I	TCNGA	1 cut(s)	710
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	3 cut(s)	127, 448, 457
HpyAV	CCTTC	2 cut(s)	754, 775
HpyCH4III	ACNGT	1 cut(s)	966
HpyCH4IV	ACGT	2 cut(s)	227, 886
HpyCH4V	TGCA	9 cut(s)	104, 197, 236, 262, 395, 566, 619, 935, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 584, 593, 861
HpyF3I	CTNAG	2 cut(s)	17, 597
HpySE526I	ACGT	2 cut(s)	227, 886
Hsp92II	CATG	6 cut(s)	358, 607, 623, 748, 944, 958
KpnI	GGTACC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	331, 891
LguI	GCTCTTC	2 cut(s)	365, 940
Lsp1109I	GCAGC	3 cut(s)	97, 274, 276
LweI	GCATC	3 cut(s)	553, 944, 1051
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	2 cut(s)	227, 886
MaeIII	GTNAC	3 cut(s)	86, 674, 910
MalI	GATC	2 cut(s)	333, 893
MboI	GATC	2 cut(s)	331, 891
MboII	GAAGA	4 cut(s)	352, 453, 957, 1043
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	4 cut(s)	408, 631, 925, 1005
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	175, 249, 311, 553, 930, 977, 990, 1099
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1061
MmeI	TCCRAC	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	327, 351, 795, 1086
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	408, 625, 672
MvaI	CCWGG	2 cut(s)	625, 672
MwoI	GCNNNNNNNGC	4 cut(s)	110, 584, 593, 861
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	331, 891
NlaIII	CATG	6 cut(s)	358, 607, 623, 748, 944, 958
NlaIV	GGNNCC	2 cut(s)	61, 492
NmuCI	GTSAC	2 cut(s)	674, 910
NspI	RCATGY	2 cut(s)	358, 623
PaeI	GCATGC	1 cut(s)	623
PaqCI	CACCTGC	1 cut(s)	95
PciSI	GCTCTTC	2 cut(s)	365, 940
PfeI	GAWTC	4 cut(s)	296, 540, 788, 1036
PflMI	CCANNNNNTGG	2 cut(s)	477, 829
PkrI	GCNGC	5 cut(s)	112, 264, 288, 291, 975
PleI	GAGTC	1 cut(s)	1060
PpsI	GAGTC	1 cut(s)	1060
Ppu21I	YACGTR	1 cut(s)	887
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	2 cut(s)	623, 670
PspGI	CCWGG	2 cut(s)	623, 670
PspN4I	GGNNCC	2 cut(s)	61, 492
PspPI	GGNCC	2 cut(s)	59, 218
PsrI	GAACNNNNNNTAC	2 cut(s)	71, 103
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	4 cut(s)	492, 504, 660, 1016
RsaNI	GTAC	4 cut(s)	491, 503, 659, 1015
SacI	GAGCTC	1 cut(s)	1005
SapI	GCTCTTC	2 cut(s)	365, 940
SaqAI	TTAA	4 cut(s)	327, 351, 795, 1086
SatI	GCNGC	5 cut(s)	111, 263, 287, 290, 974
Sau3AI	GATC	2 cut(s)	331, 891
Sau96I	GGNCC	2 cut(s)	59, 218
SchI	GAGTC	1 cut(s)	1061
ScrFI	CCNGG	3 cut(s)	408, 625, 672
SduI	GDGCHC	4 cut(s)	408, 631, 925, 1005
SfaNI	GCATC	3 cut(s)	553, 944, 1051
SfcI	CTRYAG	3 cut(s)	135, 234, 840
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SnaBI	TACGTA	1 cut(s)	887
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	8 cut(s)	175, 249, 311, 553, 930, 977, 990, 1099
SsiI	CCGC	4 cut(s)	286, 522, 973, 1018
SspMI	CTAG	1 cut(s)	756
SstI	GAGCTC	1 cut(s)	1005
StyD4I	CCNGG	3 cut(s)	406, 623, 670
TaaI	ACNGT	1 cut(s)	966
TaiI	ACGT	2 cut(s)	230, 889
TaqI	TCGA	1 cut(s)	507
TasI	AATT	8 cut(s)	175, 249, 311, 553, 930, 977, 990, 1099
TauI	GCSGC	2 cut(s)	289, 976
TfiI	GAWTC	4 cut(s)	296, 540, 788, 1036
Tru1I	TTAA	4 cut(s)	327, 351, 795, 1086
Tru9I	TTAA	4 cut(s)	327, 351, 795, 1086
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	2 cut(s)	674, 910
TseI	GCWGC	3 cut(s)	110, 262, 289
Tsp45I	GTSAC	2 cut(s)	674, 910
TspDTI	ATGAA	3 cut(s)	59, 464, 1002
TspGWI	ACGGA	1 cut(s)	1069
TspRI	CASTG	1 cut(s)	913
Van91I	CCANNNNNTGG	2 cut(s)	477, 829
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	553, 990
XceI	RCATGY	2 cut(s)	358, 623
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.