Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015938

Physical Location & Seq

Genomic Coordinates Forward (+)

23756376 .. 23759752

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30690.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGCGGTTTCAGCTAACGCCTCTCAATTCCCTCACCCCCAAAACGTTCCAAACCCTCACTTCCCCAAAACCCACAACCTCCAAACCCTCAGCTTCTCCACCAACCTCCAAACCCCCCATATTTCTTCCAGAAAAATCCAGGAAATCACTGTCTGCAGCACCTCCTCCGTCGCCACCACCACCTCTCAGAACCCCAACTCCGACTTAAACGAGCTCTGCCGCCATGGGAACCTCGAGAAAGCTCTCAAGCTCTTGGACTCCATGCAGGAGCTTCAAGTCAAAGTGGATGAAGACGCTTATGTTGCTCTGGTTAGGCTCTGCGAGTGGAAGAGAACGCACGAGGATGGTGCTCGTGTGTACAGGTATATATCGAATTCGATGACCCTTTTGAGCGTTAGGCTTGGGAATGCGCTGTTGAGCATGTTTGTGAGGTTTGGGAACTTGGTTGATGCTTGGTATGTGTTTGGGAGAATGGGTGAGAGGGATGTGTTTTCTTGGAATGTGTTGGTTGGTGGGTATGCGAAAGCGGGGTTTTTCGATGAGGCGTTGAGTTTGTATCATAGGATGTTGTGGGTTGGGATTGTGCCTGATGTGTATACATTTCCTTGTGTTCTAAGGACTTGTGGGGGAGTGCCGGACTTGGCGAGAGGGAGGGAGGTTCATGTTCATGTGATTAGATTTGGGTTTGAGTCGGATGTCGATATTGTGAATGCTTTGATTACAATGTATGTGAAATGTGGGGCGGTTGGTAGTGCGCGGGTGTTGTTTGATAGAATGCCTAGGAGAGATAGGATTTCGTGGAACGCGATGATTTCAGGGTATTTTGAGAATGGAGAGTGTTTGGAAGGGTTGAGATTGTTTCTTAAGATGAGGGAGTTTTCAGTTGATCCGGATTTGATGACCGTGACTAGCTTGCTATCTGCTTGTGAGGTTCTTGGTGATGGCAAGTTAGGGAGGGAAATCCATGGCTATGTTATGAAAACAGAAATGGTGGAGGATGTTTCGGTGTGTAGTTCTTTGATTCAGATGTATTCGGTTGTTGGGTATTTGGGGGAAGCGGAGAAAGTCTTTTGTAGGATGGAAGATAAAGATGTGGTGTTATGGACATCCATGATTTCTGGTTATGTGAATAACGCATTGCCTGAGAAGGCTGTGGAAACCTACAAAGTGATGGAGCAGGAAGGTATTATGCCAGATGAAATAACTATAGCTACTGTTATATCTGCTTGTACTTGTTTAGGGAATTTAGATTTGGGTATTAAGCTTCATGAGCTTGCTGACAGGACCGGCCTTATATCATATGTGATAGTTGCTAATACTCTCATTGATATGTATTCCAAGTGTAAATGCATTGACAAAGCACTTGAAGTGTTCCACCAGATCCCAGCAAAGAATGTGATATCTTGGACTTCAATCATACTCGGTCTTCGGACAAACAATCGGTGCTTTGAGGCTTTGATTTTCTTTCGGCAAATGAAGCTCGGGTTAAAACCAAATTCTATAACCTTAGTTTCTGTCCTATCTGCTTGTGCTAGAATAGGAGCTCTGATGTGTGGAAAGGAGATTCATGCTCATGCATTAAGGACTGGTGTAGCATTTGATGGTTTTTTACCCAATGCAGTTCTAGACATGTATGTAAGGTGTGGAAGGATGGGATCCGCGTGGAACCAGTTCAACCATAACAAGAACGATGTCACAGCATGGAATATCATACTAACTGGATATGCCCAGAGGGGGAAAGGAAGGAACGCCATCGAACTATTCCACACAATGGCTGAGTCAAGGGTAGACCCAGATGAGATCACATTTATGGCACTACTATGTGCTTGTAGTAGGTCTTGTATGGTGAGTGAAGGTTTGGAGTATTTCATAAGCATGAAGCTGAATTATGGCATTGTACCTAATCTGAAACATTATGCATGCATTGTTGATCTACTTGGCCGAGCTGGGAAATTGGCTGATGCTCATGAGTTCATACAGAAGATGCCTATAAATCCAGATGCAGCTATCTGGGGAGCCCTGTTAAATGCCTGCGTGATCCACAGGCAGGTTGAACTTGGTGAACTTGCAGCCCAGAAAATATTTGAATTTGATGCACACAGTGTAGGTTATTACATACTTATCTGTAATCTCTATGCTGACAGTGGTATGTGGGAAGAAGTTGCAAGGGTACGAAACATGATGAGGGAGAGGGGGCTAGCTGTAGATCCTGGTTGCAGTTGGGTTGAGGTGAAGGGAAAAGTTCATGCTTTCCTAAGTGGTGATAACTTCCACCCTCAAATAGAGGACCTCAATGCAGTTTTGGAGGGATTTTATGAGAAAATGAGATCGGCGGCTTTGACAGAGCCAGAAAGTAGGCTTAACGATGAAGTTGAAGCTTCAAAAGCTGAGATCTTTTGTGGACACAGTGAGAGACTAGCAGTTGCATTTGGCCTCATCAATACAGCCCCGGGGACCCCTATATGGGTGACAAAGAATCTTTATATGTGCCAAAGCTGTCACAGTACTGTCAAGTTTATCTCTAAGGTTGTGCGCCGGGAGATTTGTGTAAGGGATACTGAAAAGTTCCACCATTTTAAGGATGGCTTCTGTACCTGTGCGGATGAAGGTTATTGGGGAAAGCCAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009451 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

878

Amino Acids

98.22

Weight (kDa)

6.19

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	161 - 208	1.9e-09	PPR repeat family
PPR	PF01535	164 - 193	2.2e-07	PPR repeat
PPR_2	PF13041	263 - 309	2e-08	PPR repeat family
PPR	PF01535	265 - 293	2.2e-06	PPR repeat
PPR_2	PF13041	363 - 410	2.8e-10	PPR repeat family
PPR_2	PF13041	564 - 611	7.7e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15510
fragaria_vesca	FvH4_6g30690
malus_domestica	MD17G1201500.v1.1
prunus_persica	Prupe.3G077400_v2.0.a1
pyrus_communis	pycom17g20540
rosa_chinensis	RchiOBHm_Chr2g0137061
rosa_laevigata	RLG00000019603
rosa_multiflora	Rmu_sc0001374.1_g000025
rosa_roxburghii	Rroxscaffold_2G00107710
rosa_rugosa	Rorug02G0337700
rosa_samantha	Rh2AG386800 Rh2BG393600 Rh2CG374100 Rh2DG409700
rosa_wichuraiana	Rw2G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2038
AccB7I	CCANNNNNTGG	1 cut(s)	1771
AccI	GTMKAC	2 cut(s)	596, 1788
AccII	CGCG	3 cut(s)	757, 806, 1661
AccIII	TCCGGA	1 cut(s)	889
AciI	CCGC	9 cut(s)	5, 220, 527, 743, 757, 1058, 1659, 2333, 2600
AclI	AACGTT	1 cut(s)	45
AclWI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
AcoI	YGGCCR	1 cut(s)	1939
AcsI	RAATTY	4 cut(s)	373, 1243, 1495, 2087
AdeI	CACNNNGTG	1 cut(s)	2102
AfaI	GTAC	6 cut(s)	359, 1231, 1899, 2172, 2506, 2593
AfiI	CCNNNNNNNGG	6 cut(s)	1734, 1771, 2047, 2463, 2464, 2578
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	1 cut(s)	1629
AgsI	TTSAA	8 cut(s)	275, 1367, 1413, 1675, 2054, 2087, 2375, 2382
AjnI	CCWGG	2 cut(s)	138, 2209
AjuI	GAANNNNNNNTTGG	2 cut(s)	1235, 1267
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
Alw21I	GWGCWC	3 cut(s)	216, 352, 1546
Alw26I	GTCTC	1 cut(s)	2407
AlwI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
Ama87I	CYCGRG	3 cut(s)	233, 1481, 2449
Aor13HI	TCCGGA	1 cut(s)	889
AoxI	GGCC	3 cut(s)	1288, 1939, 2431
ApeKI	GCWGC	3 cut(s)	156, 2003, 2069
ApoI	RAATTY	4 cut(s)	373, 1243, 1495, 2087
Asp700I	GAANNNNTTC	1 cut(s)	1670
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	3 cut(s)	412, 757, 2535
AspS9I	GGNCC	3 cut(s)	1284, 2287, 2454
AsuC2I	CCSGG	3 cut(s)	2450, 2451, 2537
AsuHPI	GGTGA	8 cut(s)	26, 488, 950, 1858, 2072, 2242, 2273, 2479
AsuNHI	GCTAGC	1 cut(s)	2197
AvaI	CYCGRG	3 cut(s)	233, 1481, 2449
AvaII	GGWCC	3 cut(s)	1284, 2287, 2454
AvrII	CCTAGG	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	1655
BanII	GRGCYC	3 cut(s)	216, 1546, 2020
BauI	CACGAG	2 cut(s)	338, 351
BbsI	GAAGAC	2 cut(s)	297, 1418
Bbv12I	GWGCWC	3 cut(s)	216, 352, 1546
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	168, 2015, 2081
BccI	CCATC	8 cut(s)	338, 935, 1072, 1165, 1595, 1645, 1760, 2576
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	2 cut(s)	140, 2211
BciVI	GTATCC	1 cut(s)	2548
BcnI	CCSGG	3 cut(s)	2450, 2451, 2537
BcoDI	GTCTC	1 cut(s)	2407
BfaI	CTAG	6 cut(s)	780, 909, 1533, 1625, 2198, 2417
BfmI	CTRYAG	3 cut(s)	154, 1206, 2202
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	2038
BfuI	GTATCC	1 cut(s)	2548
BglII	AGATCT	1 cut(s)	2391
BisI	GCNGC	5 cut(s)	157, 220, 2004, 2070, 2334
BlnI	CCTAGG	1 cut(s)	779
BlsI	GCNGC	5 cut(s)	158, 221, 2005, 2071, 2335
BmcAI	AGTACT	1 cut(s)	2506
Bme1390I	CCNGG	5 cut(s)	140, 2211, 2450, 2451, 2537
Bme18I	GGWCC	3 cut(s)	1284, 2287, 2454
BmeT110I	CYCGRG	3 cut(s)	233, 1481, 2449
BmgT120I	GGNCC	3 cut(s)	1284, 2287, 2454
BmiI	GGNNCC	6 cut(s)	230, 1657, 1667, 2017, 2455, 2456
BmrFI	CCNGG	5 cut(s)	140, 2211, 2450, 2451, 2537
BmsI	GCATC	5 cut(s)	439, 1951, 1974, 1990, 2083
BmtI	GCTAGC	1 cut(s)	2201
BpiI	GAAGAC	2 cut(s)	297, 1418
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	3 cut(s)	2450, 2451, 2537
BsaJI	CCNNGG	6 cut(s)	223, 779, 964, 2448, 2449, 2450
BsaWI	WCCGGW	1 cut(s)	889
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 460, 490
Bsc4I	CCNNNNNNNGG	6 cut(s)	1734, 1771, 2047, 2463, 2464, 2578
Bse118I	RCCGGY	1 cut(s)	1286
Bse1I	ACTGG	3 cut(s)	1591, 1669, 1723
Bse3DI	GCAATG	1 cut(s)	1136
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	2 cut(s)	140, 2211
BseDI	CCNNGG	6 cut(s)	223, 779, 964, 2448, 2449, 2450
BseLI	CCNNNNNNNGG	6 cut(s)	1734, 1771, 2047, 2463, 2464, 2578
BseMI	GCAATG	1 cut(s)	1136
BseMII	CTCAG	5 cut(s)	103, 200, 1134, 1767, 2379
BseNI	ACTGG	3 cut(s)	1591, 1669, 1723
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	168, 2015, 2081
BseYI	CCCAGC	2 cut(s)	1384, 1946
Bsh1236I	CGCG	3 cut(s)	757, 806, 1661
BshFI	GGCC	3 cut(s)	1290, 1941, 2433
BsiHKAI	GWGCWC	3 cut(s)	216, 352, 1546
BsiHKCI	CYCGRG	3 cut(s)	233, 1481, 2449
BsiSI	CCGG	5 cut(s)	635, 890, 1287, 2450, 2536
BslFI	GGGAC	1 cut(s)	2467
BslI	CCNNNNNNNGG	6 cut(s)	1734, 1771, 2047, 2463, 2464, 2578
BsmAI	GTCTC	1 cut(s)	2407
BsmFI	GGGAC	1 cut(s)	2467
BsmI	GAATGC	3 cut(s)	412, 715, 780
BsnI	GGCC	3 cut(s)	1290, 1941, 2433
BsoBI	CYCGRG	3 cut(s)	233, 1481, 2449
Bsp1286I	GDGCHC	4 cut(s)	216, 352, 1546, 2020
Bsp13I	TCCGGA	1 cut(s)	889
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
Bsp19I	CCATGG	2 cut(s)	223, 964
BspACI	CCGC	9 cut(s)	5, 220, 527, 743, 757, 1058, 1659, 2333, 2600
BspANI	GGCC	3 cut(s)	1290, 1941, 2433
BspCNI	CTCAG	5 cut(s)	102, 199, 1135, 1768, 2380
BspEI	TCCGGA	1 cut(s)	889
BspFNI	CGCG	3 cut(s)	757, 806, 1661
BspHI	TCATGA	2 cut(s)	1267, 1966
BspLI	GGNNCC	6 cut(s)	230, 1657, 1667, 2017, 2455, 2456
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	2038
BspOI	GCTAGC	1 cut(s)	2201
BspPI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	1136
BsrFI	RCCGGY	1 cut(s)	1286
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	1591, 1669, 1723
BssAI	RCCGGY	1 cut(s)	1286
BssECI	CCNNGG	6 cut(s)	223, 779, 964, 2448, 2449, 2450
BssMI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
BssNAI	GTATAC	1 cut(s)	597
BssSI	CACGAG	2 cut(s)	338, 351
BssT1I	CCWWGG	3 cut(s)	223, 779, 964
Bst1107I	GTATAC	1 cut(s)	597
Bst2BI	CACGAG	2 cut(s)	338, 351
Bst2UI	CCWGG	2 cut(s)	140, 2211
Bst4CI	ACNGT	8 cut(s)	151, 904, 1216, 2102, 2144, 2408, 2504, 2509
Bst6I	CTCTTC	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	5 cut(s)	914, 1275, 1921, 2032, 2199
BstDEI	CTNAG	9 cut(s)	89, 186, 614, 1143, 1507, 1776, 2255, 2388, 2523
BstDSI	CCRYGG	2 cut(s)	223, 964
BstFNI	CGCG	3 cut(s)	757, 806, 1661
BstHHI	GCGC	3 cut(s)	412, 757, 2535
BstKTI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
BstMAI	GTCTC	1 cut(s)	2407
BstMBI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1477, 2384
BstNI	CCWGG	2 cut(s)	140, 2211
BstNSI	RCATGY	3 cut(s)	424, 1633, 1923
BstSCI	CCNGG	5 cut(s)	138, 2209, 2448, 2449, 2535
BstSFI	CTRYAG	3 cut(s)	154, 1206, 2202
BstUI	CGCG	3 cut(s)	757, 806, 1661
BstV1I	GCAGC	3 cut(s)	168, 2015, 2081
BstV2I	GAAGAC	2 cut(s)	297, 1418
BstX2I	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
BstYI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
BstZ17I	GTATAC	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	2548
BsuRI	GGCC	3 cut(s)	1290, 1941, 2433
BtgI	CCRYGG	2 cut(s)	223, 964
BtgZI	GCGATG	1 cut(s)	821
BtsIMutI	CAGTG	4 cut(s)	147, 2107, 2149, 2413
BveI	ACCTGC	1 cut(s)	2038
Cac8I	GCNNGC	5 cut(s)	914, 1275, 1921, 2032, 2199
CciI	TCATGA	2 cut(s)	1267, 1966
CfoI	GCGC	3 cut(s)	412, 757, 2535
Cfr10I	RCCGGY	1 cut(s)	1286
Cfr13I	GGNCC	3 cut(s)	1284, 2287, 2454
Cfr9I	CCCGGG	1 cut(s)	2449
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	6 cut(s)	358, 1230, 1898, 2171, 2505, 2592
CviQI	GTAC	6 cut(s)	358, 1230, 1898, 2171, 2505, 2592
DdeI	CTNAG	9 cut(s)	89, 186, 614, 1143, 1507, 1776, 2255, 2388, 2523
DpnI	GATC	9 cut(s)	888, 1382, 1657, 1802, 1932, 2039, 2208, 2329, 2393
DpnII	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
DraIII	CACNNNGTG	1 cut(s)	2102
EaeI	YGGCCR	1 cut(s)	1939
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	2 cut(s)	214, 1544
Eco130I	CCWWGG	3 cut(s)	223, 779, 964
Eco24I	GRGCYC	3 cut(s)	216, 1546, 2020
Eco32I	GATATC	1 cut(s)	1401
Eco47I	GGWCC	3 cut(s)	1284, 2287, 2454
Eco53kI	GAGCTC	2 cut(s)	214, 1544
Eco88I	CYCGRG	3 cut(s)	233, 1481, 2449
EcoICRI	GAGCTC	2 cut(s)	214, 1544
EcoO109I	RGGNCCY	2 cut(s)	2287, 2454
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	138, 2209
EcoRV	GATATC	1 cut(s)	1401
EcoT14I	CCWWGG	3 cut(s)	223, 779, 964
EcoT22I	ATGCAT	4 cut(s)	1352, 1579, 1921, 1925
EcoT38I	GRGCYC	3 cut(s)	216, 1546, 2020
ErhI	CCWWGG	3 cut(s)	223, 779, 964
FalI	AAGNNNNNCTT	2 cut(s)	2570, 2602
FaqI	GGGAC	1 cut(s)	2467
FauI	CCCGC	2 cut(s)	520, 750
FauNDI	CATATG	1 cut(s)	1300
FblI	GTMKAC	2 cut(s)	596, 1788
Fnu4HI	GCNGC	5 cut(s)	157, 220, 2004, 2070, 2334
FriOI	GRGCYC	3 cut(s)	216, 1546, 2020
Fsp4HI	GCNGC	5 cut(s)	157, 220, 2004, 2070, 2334
FspBI	CTAG	6 cut(s)	780, 909, 1533, 1625, 2198, 2417
GlaI	GCGC	3 cut(s)	411, 756, 2534
GluI	GCNGC	5 cut(s)	157, 220, 2004, 2070, 2334
GsaI	CCCAGC	2 cut(s)	1388, 1950
HaeIII	GGCC	3 cut(s)	1290, 1941, 2433
HapII	CCGG	5 cut(s)	635, 890, 1287, 2450, 2536
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	3 cut(s)	412, 757, 2535
Hin6I	GCGC	3 cut(s)	410, 755, 2533
HinP1I	GCGC	3 cut(s)	410, 755, 2533
HindIII	AAGCTT	2 cut(s)	1262, 2376
HinfI	GANTC	6 cut(s)	257, 689, 1021, 1564, 1778, 2476
HpaII	CCGG	5 cut(s)	635, 890, 1287, 2450, 2536
HphI	GGTGA	8 cut(s)	26, 488, 950, 1858, 2072, 2242, 2273, 2479
Hpy166II	GTNNAC	5 cut(s)	358, 597, 1789, 2063, 2402
Hpy188I	TCNGA	7 cut(s)	189, 202, 694, 1026, 1431, 1548, 1908
Hpy188III	TCNNGA	7 cut(s)	129, 235, 890, 1268, 1625, 1967, 1997
Hpy8I	GTNNAC	5 cut(s)	358, 597, 1789, 2063, 2402
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	8 cut(s)	839, 1141, 1175, 1641, 1737, 1847, 2227, 2600
HpyCH4III	ACNGT	8 cut(s)	151, 904, 1216, 2102, 2144, 2408, 2504, 2509
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1477, 2384
HpyF3I	CTNAG	9 cut(s)	89, 186, 614, 1143, 1507, 1776, 2255, 2388, 2523
HpySE526I	ACGT	1 cut(s)	45
HspAI	GCGC	3 cut(s)	410, 755, 2533
KflI	GGGWCCC	1 cut(s)	2454
Kpn2I	TCCGGA	1 cut(s)	889
Kzo9I	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
LmnI	GCTCC	4 cut(s)	268, 1174, 1541, 2015
Lsp1109I	GCAGC	3 cut(s)	168, 2015, 2081
LweI	GCATC	5 cut(s)	439, 1951, 1974, 1990, 2083
MaeI	CTAG	6 cut(s)	780, 909, 1533, 1625, 2198, 2417
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	4 cut(s)	904, 1693, 2467, 2498
MalI	GATC	9 cut(s)	888, 1382, 1657, 1802, 1932, 2039, 2208, 2329, 2393
MboI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
MboII	GAAGA	7 cut(s)	117, 302, 340, 1094, 1418, 1993, 2168
MflI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
MhlI	GDGCHC	4 cut(s)	216, 352, 1546, 2020
MluCI	AATT	8 cut(s)	26, 373, 1243, 1495, 1885, 1952, 2087, 2629
MlyI	GAGTC	3 cut(s)	251, 698, 1787
MmeI	TCCRAC	2 cut(s)	225, 672
Mph1103I	ATGCAT	4 cut(s)	1352, 1579, 1921, 1925
MroI	TCCGGA	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	1670
MseI	TTAA	8 cut(s)	206, 864, 1260, 1487, 1580, 2024, 2361, 2577
MslI	CAYNNNNRTG	9 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1819, 1874
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	5 cut(s)	635, 890, 1287, 2450, 2536
MspR9I	CCNGG	5 cut(s)	140, 2211, 2450, 2451, 2537
Mva1269I	GAATGC	3 cut(s)	412, 715, 780
MvaI	CCWGG	2 cut(s)	140, 2211
MvnI	CGCG	3 cut(s)	757, 806, 1661
MwoI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1477, 2384
NciI	CCSGG	3 cut(s)	2450, 2451, 2537
NcoI	CCATGG	2 cut(s)	223, 964
NdeI	CATATG	1 cut(s)	1300
NdeII	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
NheI	GCTAGC	1 cut(s)	2197
NlaIV	GGNNCC	6 cut(s)	230, 1657, 1667, 2017, 2455, 2456
NmeAIII	GCCGAG	1 cut(s)	1967
NmuCI	GTSAC	4 cut(s)	904, 1693, 2467, 2498
NsiI	ATGCAT	4 cut(s)	1352, 1579, 1921, 1925
NspI	RCATGY	3 cut(s)	424, 1633, 1923
PaeI	GCATGC	1 cut(s)	1923
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	2 cut(s)	1267, 1966
PciI	ACATGT	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PctI	GAATGC	3 cut(s)	412, 715, 780
PdmI	GAANNNNTTC	1 cut(s)	1670
PfeI	GAWTC	3 cut(s)	1021, 1564, 2476
PflMI	CCANNNNNTGG	1 cut(s)	1771
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	5 cut(s)	158, 221, 2005, 2071, 2335
PleI	GAGTC	3 cut(s)	251, 697, 1786
PpsI	GAGTC	3 cut(s)	251, 697, 1786
PpuMI	RGGWCCY	2 cut(s)	2287, 2454
PscI	ACATGT	1 cut(s)	1629
Psp124BI	GAGCTC	2 cut(s)	216, 1546
Psp1406I	AACGTT	1 cut(s)	45
Psp5II	RGGWCCY	2 cut(s)	2287, 2454
Psp6I	CCWGG	2 cut(s)	138, 2209
PspFI	CCCAGC	2 cut(s)	1384, 1946
PspGI	CCWGG	2 cut(s)	138, 2209
PspN4I	GGNNCC	6 cut(s)	230, 1657, 1667, 2017, 2455, 2456
PspPI	GGNCC	3 cut(s)	1284, 2287, 2454
PspPPI	RGGWCCY	2 cut(s)	2287, 2454
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
RsaI	GTAC	6 cut(s)	359, 1231, 1899, 2172, 2506, 2593
RsaNI	GTAC	6 cut(s)	358, 1230, 1898, 2171, 2505, 2592
RseI	CAYNNNNRTG	9 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1819, 1874
SacI	GAGCTC	2 cut(s)	216, 1546
SaqAI	TTAA	8 cut(s)	206, 864, 1260, 1487, 1580, 2024, 2361, 2577
SatI	GCNGC	5 cut(s)	157, 220, 2004, 2070, 2334
Sau3AI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
Sau96I	GGNCC	3 cut(s)	1284, 2287, 2454
ScaI	AGTACT	1 cut(s)	2506
SchI	GAGTC	3 cut(s)	251, 698, 1787
ScrFI	CCNGG	5 cut(s)	140, 2211, 2450, 2451, 2537
SduI	GDGCHC	4 cut(s)	216, 352, 1546, 2020
SfaNI	GCATC	5 cut(s)	439, 1951, 1974, 1990, 2083
SfcI	CTRYAG	3 cut(s)	154, 1206, 2202
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	3 cut(s)	1284, 2287, 2454
SlaI	CTCGAG	1 cut(s)	233
SmaI	CCCGGG	1 cut(s)	2451
SmiMI	CAYNNNNRTG	9 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1819, 1874
SmlI	CTYRAG	3 cut(s)	233, 245, 863
SmoI	CTYRAG	3 cut(s)	233, 245, 863
SphI	GCATGC	1 cut(s)	1923
Sse9I	AATT	8 cut(s)	26, 373, 1243, 1495, 1885, 1952, 2087, 2629
SsiI	CCGC	9 cut(s)	5, 220, 527, 743, 757, 1058, 1659, 2333, 2600
SspI	AATATT	1 cut(s)	2082
SspMI	CTAG	6 cut(s)	780, 909, 1533, 1625, 2198, 2417
SstI	GAGCTC	2 cut(s)	216, 1546
StyD4I	CCNGG	5 cut(s)	138, 2209, 2448, 2449, 2535
StyI	CCWWGG	3 cut(s)	223, 779, 964
TaaI	ACNGT	8 cut(s)	151, 904, 1216, 2102, 2144, 2408, 2504, 2509
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	6 cut(s)	234, 371, 377, 537, 699, 1755
TaqII	GACCGA	1 cut(s)	1412
TasI	AATT	8 cut(s)	26, 373, 1243, 1495, 1885, 1952, 2087, 2629
TatI	WGTACW	3 cut(s)	357, 1229, 2504
TauI	GCSGC	2 cut(s)	222, 2336
TfiI	GAWTC	3 cut(s)	1021, 1564, 2476
Tru1I	TTAA	8 cut(s)	206, 864, 1260, 1487, 1580, 2024, 2361, 2577
Tru9I	TTAA	8 cut(s)	206, 864, 1260, 1487, 1580, 2024, 2361, 2577
TscAI	CASTG	4 cut(s)	154, 2107, 2149, 2413
TseFI	GTSAC	4 cut(s)	904, 1693, 2467, 2498
TseI	GCWGC	3 cut(s)	156, 2003, 2069
Tsp45I	GTSAC	4 cut(s)	904, 1693, 2467, 2498
TspGWI	ACGGA	1 cut(s)	157
TspMI	CCCGGG	1 cut(s)	2449
TspRI	CASTG	4 cut(s)	154, 2107, 2149, 2413
Van91I	CCANNNNNTGG	1 cut(s)	1771
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	1284, 2287, 2454
XapI	RAATTY	4 cut(s)	373, 1243, 1495, 2087
XbaI	TCTAGA	1 cut(s)	1624
XceI	RCATGY	3 cut(s)	424, 1633, 1923
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2579
XhoI	CTCGAG	1 cut(s)	233
XmaI	CCCGGG	1 cut(s)	2449
XmaJI	CCTAGG	1 cut(s)	779
XmiI	GTMKAC	2 cut(s)	596, 1788
XmnI	GAANNNNTTC	1 cut(s)	1670
XspI	CTAG	6 cut(s)	780, 909, 1533, 1625, 2198, 2417
ZrmI	AGTACT	1 cut(s)	2506
Zsp2I	ATGCAT	4 cut(s)	1352, 1579, 1921, 1925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.