Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015938

Physical Location & Seq

Genomic Coordinates Forward (+)

51891923 .. 51894999

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGCGGTTTCAGCTAATACCTCTCAAATTCCTCACAGCCAACACCTCCCAAATCCTCAGTTCCCCAAAACCCACAAGCTCGAAACCCTAAGCTTCTCCACCAAGCTCCAAAGTCCCCATATTTCTTCTAGAAAAACCCAAGAACTCACTGTCTGCAGCACCTCCTCCGTCACCACCACCAACACCCAGAACCCCAACTCCGACCTAAACGAGCTCTGCCGCCATGGGAACCTCGAGAAAGCTCTGAAGCTCTTGGACTCTATGCAGGAGCTTCAGGTTAAGGTGGAAGAAGATGCTTATGTTGCTTTGGTTAGGCTATGCGAGTGGAAGAGAACACACGAGGATGGGGCTCGCGTGTACAAGTGCATATCGAATTCGATGACCCTTTTGAGCGTTAGGCTTGGTAATGCGTTGTTGAGCATGTTTGTGAGGTTTGGCAATTTGGTTGATGCTTGGTATGTGTTTGGGAGAATGGGTGAGAGGGATGTGTTTTCTTGGAATGTTTTGGTTGGTGGGTATGCGAAAGCCGGGTTTTTCGATGAGGCTTTGAACTTGTATCATAGAATGTTGTGGGTTGGGATTGTGCCTGATGTGTATACGTTTCCTTGTGTTCTCAGAACTTGTGGGGGAGTGCCGGACTTGGCGAGAGGGAGGGAGATTCATGTGCATGTGATTCGATTTGGGTTTGAGTCGGATGTCGATATTGTGAATGCTTTGATTACAATGTATGTCAAATGTGGGGTGGTTGGTAGTGCACGGGTGCTGTTTGATAGAATGCCTAGGAGAGACAGGATTTCGTGGAATGCAATGATGTCGGGGTATTTTGAGAATGGAGAGTATTTGGAAGGACTGAGATTGTTTCTTATGATGCGGGAGTTTTCAGTTGATCCGGATTTGATGACCGTGACTAGCTTGTTATCTGCTTGCGAGGTTCTTGGTGATGACAAGTTAGGGAGGGAAATACATGGTTATGTTATGAAAACAGAGTTGGTGGACGATGTTTCGGTGTGTAGTTCTTTGATTCAGATGTATTCAGTTGTTGGGGATTTGGGGGAGGCGGAGAAAGTATTTTCTAGGATGGAAGATAAAGATGTGGTGTTATGGACATCGATGATTTCGGGTTATGTGAATAACGCACTGCCTGAGAAGGCTGTGGAAACCTACAAAGTGATGGAGCAGGAGGGTATTTTGCCAGATGAAATAACTATAGCCAGTGTTATATCTGCTTGTGCTTGTTTAGGGAACTTAGATATGGGTATCAAGCTTCATGAGCTTGCTGACAGGACTGGGCTCATATCGTATGTGATAGTTGCTAATACTCTCATTGATATGTATTCTAAGTGTAAATGCATTGACAAAGCATTGGAAGTGTTCCACCAGATCCCAGGAAAGAATGTCATATCTTGGACTTCAATCATACTCGGCCTTCGGATAAACAATCGGTGCTTTGAGGCTTTAATTTTCTTTCGGCAAATGAAACTCAGGTTAAAACCAAATTCTATTACCTTGGTTTCCGTCCTAGCTGCTTGTGCTAGAATAGGAGCTCTGATGTGTGGAAAGGAGATTCATGCTCATGCACTAAGGAGTGGTGTAGCATTTGATGGTTTTTTACCCAATGCCGTTCTTGACATGTATGTAAAGTGTGGAAGGATGGGATCCGCATGGAACCAGTTCAACCATAACAAGAACGATGTCACTGGATGGAATATCATACTAACTGGGTATGCCCAGAGGGGGCAAGGAAGGAATGCCATTGAGCTATTCCACACAATGGCTGAGTCCAGGGTAGACCCAGATGAGATCACATTTATGGCGCTACTATGTGCTTGTAGTAGGTCTGGTATGGTTAGTGAAGGTTTGGAGTATTTCATTAGCATGAAACTTAATTATGGCATTGCACCTAATCTGAAACACTATGCCTGCATTGTCGATCTACTTGGCCGCGCTGGGCAATTGGCTGAAGCTCATGAGTTTGTACAGAAGATGCCCATAAATCCAGATGCAGCTATCTGGGGAGCCTTGTTAAATGCTTGTGTGATCCACAGGCAGGTTGAACTTGGTGAACTTGCAGCCCAGAAAATATTTGAATTGGATGCCCAAAGTGTAGGGTATTATATACTTATCTGTAACCTTTATGCAGACAGTGGTATGTGGGAAGAAGTTGCAGTGGTAAGAAACATGATGAGGGAGGGGGGGCTAACTGTAGATCCCGGGTGCAGTTGGGTTGAGGTAAAGGGAAAAGTTCATGCTTTCCTAAGTGGCGATAACTTCCACCCTCAAATAGAGGAACTTAATGCAGTTTTGGAGGGATTTTATGAGAAAATGAGATCATTGGCTTTCACAGAGCCAGAAAGTAGGCTTAAAGATGAAGTTGAAGCTTCAAAAGCTGAGATCTTTTGTGGACACAGTGAGAGACTAGCAGTTGCGTTTGGCCTCATTAATACAGCCCCGGGGACGCCTATATGGGTGACAAAGAATCTTTATATGTGCCAAAGCTGTCACAGTACTGTCAAATTTATCTCTAAGGTTGTGCGCCGGGAGATTTGTGTAAGGGATACTGAAAAATTCCACCATTTTAAGGATGGCTTCTGTACTTGTGGGGATGAAGGTTATTGGGGAAAGCCAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009451 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

877

Amino Acids

98.17

Weight (kDa)

6.01

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	161 - 208	2.4e-09	PPR repeat family
PPR	PF01535	164 - 193	7.7e-07	PPR repeat
PPR_2	PF13041	263 - 309	3.6e-08	PPR repeat family
PPR_2	PF13041	363 - 411	3.9e-10	PPR repeat family
PPR_2	PF13041	564 - 611	2.5e-10	PPR repeat family
E_motif	PF20431	681 - 743	4.9e-18	E motif
DYW_deaminase	PF14432	787 - 868	2.8e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15510
fragaria_vesca	FvH4_6g30690
malus_domestica	MD17G1201500.v1.1
prunus_persica	Prupe.3G077400_v2.0.a1
pyrus_communis	pycom17g20540
rosa_chinensis	RchiOBHm_Chr2g0137061
rosa_laevigata	RLG00000019603
rosa_multiflora	Rmu_sc0001374.1_g000025
rosa_roxburghii	Rroxscaffold_2G00107710
rosa_rugosa	Rorug02G0337700
rosa_samantha	Rh2AG386800 Rh2BG393600 Rh2CG374100 Rh2DG409700
rosa_wichuraiana	Rw2G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2038
AccB7I	CCANNNNNTGG	1 cut(s)	1771
AccI	GTMKAC	2 cut(s)	596, 1788
AccII	CGCG	2 cut(s)	354, 1944
AccIII	TCCGGA	1 cut(s)	889
AciI	CCGC	6 cut(s)	5, 220, 871, 1058, 1659, 1942
AclWI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
AcoI	YGGCCR	1 cut(s)	1939
AcsI	RAATTY	5 cut(s)	27, 373, 1495, 2513, 2564
AcuI	CTGAAG	3 cut(s)	257, 266, 1980
AcyI	GRCGYC	1 cut(s)	2456
AfaI	GTAC	4 cut(s)	359, 1977, 2506, 2593
AfiI	CCNNNNNNNGG	4 cut(s)	1734, 1771, 2047, 2578
AflIII	ACRYGT	1 cut(s)	1629
AgsI	TTSAA	7 cut(s)	550, 1413, 1675, 2054, 2087, 2375, 2382
AjnI	CCWGG	2 cut(s)	1384, 1781
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
Alw21I	GWGCWC	3 cut(s)	216, 757, 1546
Alw26I	GTCTC	2 cut(s)	780, 2407
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
Ama87I	CYCGRG	3 cut(s)	233, 2210, 2449
Aor13HI	TCCGGA	1 cut(s)	889
AoxI	GGCC	3 cut(s)	1423, 1939, 2431
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	4 cut(s)	156, 1523, 2003, 2069
ApoI	RAATTY	5 cut(s)	27, 373, 1495, 2513, 2564
AseI	ATTAAT	1 cut(s)	2439
Asp700I	GAANNNNTTC	1 cut(s)	1670
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	3 cut(s)	1816, 1946, 2535
AsuC2I	CCSGG	6 cut(s)	529, 2211, 2212, 2450, 2451, 2537
AsuHPI	GGTGA	5 cut(s)	163, 488, 950, 2072, 2479
AvaI	CYCGRG	3 cut(s)	233, 2210, 2449
AvrII	CCTAGG	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	1655
BanII	GRGCYC	4 cut(s)	216, 352, 1293, 1546
BauI	CACGAG	1 cut(s)	338
Bbv12I	GWGCWC	3 cut(s)	216, 757, 1546
BbvI	GCAGC	4 cut(s)	168, 1510, 2015, 2081
BccI	CCATC	7 cut(s)	338, 1072, 1165, 1595, 1645, 1695, 2576
BceAI	ACGGC	1 cut(s)	1604
BcgI	CGANNNNNNTGC	4 cut(s)	656, 690, 795, 829
BciT130I	CCWGG	2 cut(s)	1386, 1783
BciVI	GTATCC	1 cut(s)	2548
BcnI	CCSGG	6 cut(s)	529, 2211, 2212, 2450, 2451, 2537
BcoDI	GTCTC	2 cut(s)	780, 2407
BfaI	CTAG	7 cut(s)	129, 780, 909, 1074, 1520, 1533, 2417
BfmI	CTRYAG	3 cut(s)	154, 1206, 2202
BfoI	RGCGCY	1 cut(s)	1817
BfuAI	ACCTGC	1 cut(s)	2038
BfuI	GTATCC	1 cut(s)	2548
BglII	AGATCT	1 cut(s)	2391
BisI	GCNGC	6 cut(s)	157, 220, 1524, 1942, 2004, 2070
BlnI	CCTAGG	1 cut(s)	779
BlsI	GCNGC	6 cut(s)	158, 221, 1525, 1943, 2005, 2071
BmcAI	AGTACT	1 cut(s)	2506
Bme1390I	CCNGG	8 cut(s)	529, 1386, 1783, 2211, 2212, 2450, 2451, 2537
BmeT110I	CYCGRG	3 cut(s)	233, 2210, 2449
BmiI	GGNNCC	4 cut(s)	230, 1657, 1667, 2017
BmrFI	CCNGG	8 cut(s)	529, 1386, 1783, 2211, 2212, 2450, 2451, 2537
BmrI	ACTGGG	2 cut(s)	1296, 1728
BmsI	GCATC	6 cut(s)	283, 439, 858, 1974, 1990, 2083
BmuI	ACTGGG	2 cut(s)	1296, 1728
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	6 cut(s)	529, 2211, 2212, 2450, 2451, 2537
Bsa29I	ATCGAT	1 cut(s)	1109
BsaHI	GRCGYC	1 cut(s)	2456
BsaJI	CCNNGG	9 cut(s)	223, 779, 1384, 1506, 1782, 2210, 2448, 2449, 2450
BsaWI	WCCGGW	1 cut(s)	889
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	1734, 1771, 2047, 2578
Bse1I	ACTGG	5 cut(s)	1212, 1291, 1669, 1702, 1723
Bse3DI	GCAATG	2 cut(s)	813, 1893
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	2 cut(s)	1386, 1783
BseCI	ATCGAT	1 cut(s)	1109
BseDI	CCNNGG	9 cut(s)	223, 779, 1384, 1506, 1782, 2210, 2448, 2449, 2450
BseGI	GGATG	9 cut(s)	349, 490, 700, 1083, 1656, 1706, 2098, 2587, 2608
BseLI	CCNNNNNNNGG	4 cut(s)	1734, 1771, 2047, 2578
BseMI	GCAATG	2 cut(s)	813, 1893
BseMII	CTCAG	7 cut(s)	71, 628, 842, 1134, 1495, 1767, 2379
BseNI	ACTGG	5 cut(s)	1212, 1291, 1669, 1702, 1723
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	4 cut(s)	168, 1510, 2015, 2081
BseYI	CCCAGC	1 cut(s)	1946
BsgI	GTGCAG	1 cut(s)	2236
Bsh1236I	CGCG	2 cut(s)	354, 1944
BshFI	GGCC	3 cut(s)	1425, 1941, 2433
BshVI	ATCGAT	1 cut(s)	1109
BsiHKAI	GWGCWC	3 cut(s)	216, 757, 1546
BsiHKCI	CYCGRG	3 cut(s)	233, 2210, 2449
BsiSI	CCGG	6 cut(s)	528, 635, 890, 2211, 2450, 2536
BslFI	GGGAC	2 cut(s)	99, 2467
BslI	CCNNNNNNNGG	4 cut(s)	1734, 1771, 2047, 2578
BsmAI	GTCTC	2 cut(s)	780, 2407
BsmFI	GGGAC	2 cut(s)	99, 2467
BsmI	GAATGC	4 cut(s)	715, 780, 808, 1753
BsnI	GGCC	3 cut(s)	1425, 1941, 2433
BsoBI	CYCGRG	3 cut(s)	233, 2210, 2449
Bsp1286I	GDGCHC	5 cut(s)	216, 352, 757, 1293, 1546
Bsp13I	TCCGGA	1 cut(s)	889
Bsp1407I	TGTACA	2 cut(s)	357, 1975
Bsp143I	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	6 cut(s)	5, 220, 871, 1058, 1659, 1942
BspANI	GGCC	3 cut(s)	1425, 1941, 2433
BspCNI	CTCAG	7 cut(s)	70, 627, 843, 1135, 1494, 1768, 2380
BspDI	ATCGAT	1 cut(s)	1109
BspEI	TCCGGA	1 cut(s)	889
BspFNI	CGCG	2 cut(s)	354, 1944
BspHI	TCATGA	2 cut(s)	1267, 1966
BspLI	GGNNCC	4 cut(s)	230, 1657, 1667, 2017
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	2038
BspPI	GGATC	6 cut(s)	881, 1375, 1650, 1663, 2032, 2201
BsrDI	GCAATG	2 cut(s)	813, 1893
BsrGI	TGTACA	2 cut(s)	357, 1975
BsrI	ACTGG	5 cut(s)	1212, 1291, 1669, 1702, 1723
BssECI	CCNNGG	9 cut(s)	223, 779, 1384, 1506, 1782, 2210, 2448, 2449, 2450
BssMI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
BssNAI	GTATAC	1 cut(s)	597
BssNI	GRCGYC	1 cut(s)	2456
BssSI	CACGAG	1 cut(s)	338
BssT1I	CCWWGG	3 cut(s)	223, 779, 1506
Bst1107I	GTATAC	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	1386, 1783
Bst4CI	ACNGT	7 cut(s)	151, 904, 2144, 2203, 2408, 2504, 2509
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	2456
BstAUI	TGTACA	2 cut(s)	357, 1975
BstC8I	GCNNGC	4 cut(s)	352, 925, 1275, 1921
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	9 cut(s)	349, 490, 700, 1083, 1656, 1706, 2098, 2587, 2608
BstFNI	CGCG	2 cut(s)	354, 1944
BstH2I	RGCGCY	1 cut(s)	1817
BstHHI	GCGC	3 cut(s)	1816, 1946, 2535
BstKTI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
BstMAI	GTCTC	2 cut(s)	780, 2407
BstMBI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1529, 2384
BstNI	CCWGG	2 cut(s)	1386, 1783
BstNSI	RCATGY	3 cut(s)	424, 671, 1633
BstSCI	CCNGG	8 cut(s)	527, 1384, 1781, 2209, 2210, 2448, 2449, 2535
BstSFI	CTRYAG	3 cut(s)	154, 1206, 2202
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	2 cut(s)	354, 1944
BstV1I	GCAGC	4 cut(s)	168, 1510, 2015, 2081
BstX2I	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
BstYI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
BstZ17I	GTATAC	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	1109
BsuI	GTATCC	1 cut(s)	2548
BsuRI	GGCC	3 cut(s)	1425, 1941, 2433
BsuTUI	ATCGAT	1 cut(s)	1109
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	9 cut(s)	349, 490, 700, 1083, 1656, 1706, 2098, 2587, 2608
BtsI	GCAGTG	2 cut(s)	1136, 2172
BtsIMutI	CAGTG	7 cut(s)	147, 1136, 1219, 1695, 2149, 2172, 2413
BveI	ACCTGC	1 cut(s)	2038
Cac8I	GCNNGC	4 cut(s)	352, 925, 1275, 1921
CciI	TCATGA	2 cut(s)	1267, 1966
CfoI	GCGC	3 cut(s)	1816, 1946, 2535
Cfr9I	CCCGGG	2 cut(s)	2210, 2449
ClaI	ATCGAT	1 cut(s)	1109
CseI	GACGC	1 cut(s)	2464
Csp6I	GTAC	4 cut(s)	358, 1976, 2505, 2592
CviQI	GTAC	4 cut(s)	358, 1976, 2505, 2592
DpnI	GATC	9 cut(s)	888, 1382, 1657, 1802, 1932, 2039, 2208, 2329, 2393
DpnII	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
EaeI	YGGCCR	1 cut(s)	1939
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EciI	GGCGGA	1 cut(s)	1073
Ecl136II	GAGCTC	2 cut(s)	214, 1544
Eco130I	CCWWGG	3 cut(s)	223, 779, 1506
Eco24I	GRGCYC	4 cut(s)	216, 352, 1293, 1546
Eco53kI	GAGCTC	2 cut(s)	214, 1544
Eco57I	CTGAAG	3 cut(s)	257, 266, 1980
Eco88I	CYCGRG	3 cut(s)	233, 2210, 2449
EcoICRI	GAGCTC	2 cut(s)	214, 1544
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	1384, 1781
EcoT14I	CCWWGG	3 cut(s)	223, 779, 1506
EcoT22I	ATGCAT	1 cut(s)	1352
EcoT38I	GRGCYC	4 cut(s)	216, 352, 1293, 1546
ErhI	CCWWGG	3 cut(s)	223, 779, 1506
FalI	AAGNNNNNCTT	2 cut(s)	2570, 2602
FaqI	GGGAC	2 cut(s)	99, 2467
FauI	CCCGC	1 cut(s)	864
FblI	GTMKAC	2 cut(s)	596, 1788
Fnu4HI	GCNGC	6 cut(s)	157, 220, 1524, 1942, 2004, 2070
FokI	GGATG	9 cut(s)	356, 497, 707, 1090, 1663, 1713, 2105, 2594, 2615
FriOI	GRGCYC	4 cut(s)	216, 352, 1293, 1546
Fsp4HI	GCNGC	6 cut(s)	157, 220, 1524, 1942, 2004, 2070
FspBI	CTAG	7 cut(s)	129, 780, 909, 1074, 1520, 1533, 2417
GlaI	GCGC	3 cut(s)	1815, 1945, 2534
GluI	GCNGC	6 cut(s)	157, 220, 1524, 1942, 2004, 2070
GsaI	CCCAGC	1 cut(s)	1950
HaeII	RGCGCY	1 cut(s)	1817
HaeIII	GGCC	3 cut(s)	1425, 1941, 2433
HapII	CCGG	6 cut(s)	528, 635, 890, 2211, 2450, 2536
HgaI	GACGC	1 cut(s)	2464
HhaI	GCGC	3 cut(s)	1816, 1946, 2535
Hin1I	GRCGYC	1 cut(s)	2456
Hin6I	GCGC	3 cut(s)	1814, 1944, 2533
HinP1I	GCGC	3 cut(s)	1814, 1944, 2533
HindIII	AAGCTT	3 cut(s)	91, 1262, 2376
HinfI	GANTC	8 cut(s)	257, 658, 673, 689, 1021, 1564, 1778, 2476
HpaII	CCGG	6 cut(s)	528, 635, 890, 2211, 2450, 2536
HphI	GGTGA	5 cut(s)	163, 488, 950, 2072, 2479
Hpy166II	GTNNAC	7 cut(s)	358, 597, 755, 994, 1789, 2063, 2402
Hpy188I	TCNGA	8 cut(s)	202, 246, 617, 694, 1026, 1431, 1548, 1908
Hpy188III	TCNNGA	7 cut(s)	129, 235, 890, 1268, 1625, 1967, 1997
Hpy8I	GTNNAC	7 cut(s)	358, 597, 755, 994, 1789, 2063, 2402
HpyAV	CCTTC	7 cut(s)	839, 1141, 1436, 1641, 1737, 1847, 2600
HpyCH4III	ACNGT	7 cut(s)	151, 904, 2144, 2203, 2408, 2504, 2509
HpyCH4IV	ACGT	1 cut(s)	599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1529, 2384
HpySE526I	ACGT	1 cut(s)	599
Hsp92I	GRCGYC	1 cut(s)	2456
HspAI	GCGC	3 cut(s)	1814, 1944, 2533
Kpn2I	TCCGGA	1 cut(s)	889
Kzo9I	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
LmnI	GCTCC	5 cut(s)	111, 268, 1174, 1541, 2015
Lsp1109I	GCAGC	4 cut(s)	168, 1510, 2015, 2081
LweI	GCATC	6 cut(s)	283, 439, 858, 1974, 1990, 2083
MaeI	CTAG	7 cut(s)	129, 780, 909, 1074, 1520, 1533, 2417
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	6 cut(s)	169, 904, 1693, 2126, 2467, 2498
MalI	GATC	9 cut(s)	888, 1382, 1657, 1802, 1932, 2039, 2208, 2329, 2393
MboI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
MboII	GAAGA	7 cut(s)	117, 299, 302, 340, 1094, 1993, 2168
MfeI	CAATTG	1 cut(s)	1952
MflI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
MhlI	GDGCHC	5 cut(s)	216, 352, 757, 1293, 1546
MlyI	GAGTC	3 cut(s)	251, 698, 1787
MmeI	TCCRAC	2 cut(s)	225, 672
Mph1103I	ATGCAT	1 cut(s)	1352
MroI	TCCGGA	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	1670
MseI	TTAA	9 cut(s)	279, 1457, 1487, 1884, 2024, 2292, 2361, 2439, 2577
MslI	CAYNNNNRTG	8 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1874
MspI	CCGG	6 cut(s)	528, 635, 890, 2211, 2450, 2536
MspR9I	CCNGG	8 cut(s)	529, 1386, 1783, 2211, 2212, 2450, 2451, 2537
MunI	CAATTG	1 cut(s)	1952
Mva1269I	GAATGC	4 cut(s)	715, 780, 808, 1753
MvaI	CCWGG	2 cut(s)	1386, 1783
MvnI	CGCG	2 cut(s)	354, 1944
MwoI	GCNNNNNNNGC	5 cut(s)	11, 302, 1270, 1529, 2384
NciI	CCSGG	6 cut(s)	529, 2211, 2212, 2450, 2451, 2537
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
NlaIV	GGNNCC	4 cut(s)	230, 1657, 1667, 2017
NmeAIII	GCCGAG	1 cut(s)	1401
NmuCI	GTSAC	5 cut(s)	169, 904, 1693, 2467, 2498
NsiI	ATGCAT	1 cut(s)	1352
NspI	RCATGY	3 cut(s)	424, 671, 1633
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	2 cut(s)	1267, 1966
PciI	ACATGT	1 cut(s)	1629
PctI	GAATGC	4 cut(s)	715, 780, 808, 1753
PdmI	GAANNNNTTC	1 cut(s)	1670
PfeI	GAWTC	5 cut(s)	658, 673, 1021, 1564, 2476
PflMI	CCANNNNNTGG	1 cut(s)	1771
PkrI	GCNGC	6 cut(s)	158, 221, 1525, 1943, 2005, 2071
PleI	GAGTC	3 cut(s)	251, 697, 1786
PpsI	GAGTC	3 cut(s)	251, 697, 1786
PscI	ACATGT	1 cut(s)	1629
PshBI	ATTAAT	1 cut(s)	2439
Psp124BI	GAGCTC	2 cut(s)	216, 1546
Psp6I	CCWGG	2 cut(s)	1384, 1781
PspFI	CCCAGC	1 cut(s)	1946
PspGI	CCWGG	2 cut(s)	1384, 1781
PspN4I	GGNNCC	4 cut(s)	230, 1657, 1667, 2017
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	4 cut(s)	1380, 1655, 2206, 2391
RsaI	GTAC	4 cut(s)	359, 1977, 2506, 2593
RsaNI	GTAC	4 cut(s)	358, 1976, 2505, 2592
RseI	CAYNNNNRTG	8 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1874
SacI	GAGCTC	2 cut(s)	216, 1546
SaqAI	TTAA	9 cut(s)	279, 1457, 1487, 1884, 2024, 2292, 2361, 2439, 2577
SatI	GCNGC	6 cut(s)	157, 220, 1524, 1942, 2004, 2070
Sau3AI	GATC	9 cut(s)	886, 1380, 1655, 1800, 1930, 2037, 2206, 2327, 2391
ScaI	AGTACT	1 cut(s)	2506
SchI	GAGTC	3 cut(s)	251, 698, 1787
ScrFI	CCNGG	8 cut(s)	529, 1386, 1783, 2211, 2212, 2450, 2451, 2537
SduI	GDGCHC	5 cut(s)	216, 352, 757, 1293, 1546
SfaNI	GCATC	6 cut(s)	283, 439, 858, 1974, 1990, 2083
SfcI	CTRYAG	3 cut(s)	154, 1206, 2202
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmaI	CCCGGG	2 cut(s)	2212, 2451
SmiMI	CAYNNNNRTG	8 cut(s)	342, 425, 666, 969, 1328, 1572, 1808, 1874
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	6 cut(s)	5, 220, 871, 1058, 1659, 1942
SspI	AATATT	1 cut(s)	2082
SspMI	CTAG	7 cut(s)	129, 780, 909, 1074, 1520, 1533, 2417
SstI	GAGCTC	2 cut(s)	216, 1546
StyD4I	CCNGG	8 cut(s)	527, 1384, 1781, 2209, 2210, 2448, 2449, 2535
StyI	CCWWGG	3 cut(s)	223, 779, 1506
TaaI	ACNGT	7 cut(s)	151, 904, 2144, 2203, 2408, 2504, 2509
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	9 cut(s)	81, 234, 371, 377, 537, 676, 699, 1109, 1929
TatI	WGTACW	4 cut(s)	357, 1975, 2504, 2591
TauI	GCSGC	2 cut(s)	222, 1944
TfiI	GAWTC	5 cut(s)	658, 673, 1021, 1564, 2476
Tru1I	TTAA	9 cut(s)	279, 1457, 1487, 1884, 2024, 2292, 2361, 2439, 2577
Tru9I	TTAA	9 cut(s)	279, 1457, 1487, 1884, 2024, 2292, 2361, 2439, 2577
TscAI	CASTG	7 cut(s)	154, 1143, 1219, 1702, 2149, 2172, 2413
TseFI	GTSAC	5 cut(s)	169, 904, 1693, 2467, 2498
TseI	GCWGC	4 cut(s)	156, 1523, 2003, 2069
Tsp45I	GTSAC	5 cut(s)	169, 904, 1693, 2467, 2498
TspGWI	ACGGA	2 cut(s)	157, 1504
TspMI	CCCGGG	2 cut(s)	2210, 2449
TspRI	CASTG	7 cut(s)	154, 1143, 1219, 1702, 2149, 2172, 2413
Van91I	CCANNNNNTGG	1 cut(s)	1771
VneI	GTGCAC	1 cut(s)	753
VspI	ATTAAT	1 cut(s)	2439
XapI	RAATTY	5 cut(s)	27, 373, 1495, 2513, 2564
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	3 cut(s)	424, 671, 1633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2579
XhoI	CTCGAG	1 cut(s)	233
XmaI	CCCGGG	2 cut(s)	2210, 2449
XmaJI	CCTAGG	1 cut(s)	779
XmiI	GTMKAC	2 cut(s)	596, 1788
XmnI	GAANNNNTTC	1 cut(s)	1670
XspI	CTAG	7 cut(s)	129, 780, 909, 1074, 1520, 1533, 2417
ZrmI	AGTACT	1 cut(s)	2506
Zsp2I	ATGCAT	1 cut(s)	1352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.