Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015938

Physical Location & Seq

Genomic Coordinates Reverse (-)

24343145 .. 24345811

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGCAAAACCCTCTGGGAAGACGATGCTCTGAGTGTCCAAAAATGGCGGTTTCAGCTAAAACCACTCAAATACCTCACTCTCCGCATCTTCCCAATCCTCAATTCCCCAAGACCCATAAGCTCGAAGCCATCGGTTTCTCTCACAAGCTCCAAACCCACCTAATTTCCTACAGAAAAACCCAAGAAATCACAGTCTGCAGCACCTCCTCTGTTTCCACACAGAACCCAAACTCTGATTTGAAAAAGCTTTGCCGCCATGGGAACCTTGAACAAGCTTTGAAGCTCTTGGATTCGATGCAGGAGGTTCAGGTTAAAGTGGATGAAGATGGTTACGTTGCTTTGGTTAGGCTGTGTGAGTGGAAGCGAACGCATGAGGAAGGAGCTCGCGTGTACTCGTACATATCGAATTCGACGACCCTTTTGAGTGTTCGGCTTGGTAATGCATTGCTGAGCATGTTTGTGAGGTTTGGTAATTTGGTTGATGCTTGGTATGTGTTTGGAAGAATGGGTGAGAGGGATGTGTTTTCTTGGAATGTTTTGGTTGGCGGGTATGCGAAAGCGGGGTTTTTCGATGAGGCTTTGAATTTGTATCATAGAATGTTGTGGGTTGGGATTGTGCCTGATATTTATACATTTCCTTGTGTTCTTAGGACTTGTGGGGGCGTGCCAGACTTGGCGAGGGGAAGGGAGATTCATTTACATGTGATTCGATTCGGGTTTGAGTCCGATGTTGATGTGGTTAATGCGTTGATCACAATGTATGTGAAATGCGGTGCTCTTGGTACTGCACGGAAGTTGTTTGATAAAATGCCTAGGAGGGACAGGATCTCGTGGAACGCAATGATTTCGGGATATTTTGAGAATGGAGAGTTTTTGGAAGGGTTGAAATTGTTTCTCATGATGCGCGAGTCTTCAATTTATCCGGATTTGATGACTATGACTAGCTTGGTATCTGCTTGTGAGCTTCTTGGGGATGATAAATTAGGGAGGGAAATCCATGGTTACATTTTGAGGACGGAGTTTGCGGAGGATGTTTCGGTTTGTAATTCTTTAATTCAGATGTATTCAATCATTGGGCATTTCACGGAGGCTGAAAAAGTTTTTTCTAGAATGGAATATAAAGATGTGGTGTCATGGACATCAATGATCTCGTGTTATGGCAATAATGCACTGCCTGACAAGGCTGTGGAAACCTACAGAATGATGGAGCGAGAGGGAATCATGCCAGATGAAATAACTATAGCCTGTGTTCTATCTGCTTGTGCATGTTTAGGGAATTTGGATATGGGTATGAAGCTTCATGAGCTTGCTTACCGGACTGGGTACATATCATATGTGATAGTTGCCAATACACTCATTGATATGTATTCTAAGTGTAAATGCGTCGATAAGGCTTTGGAAGTGTTCCATGGCATCCCCAGCAAGAATGTCATATCATGGAGTTCTATCATCCTTGGCCTTCGGACCAACAATCGGTGCTTTGAGGCTTTGATTTTCTTTCGGCAAATGAAACTCAGGCTGAAACCAAATTCTGTTACCTTGGTTTCTGTCCTATCTGCTTGTGCAAGAATAGGAGCTTTGATGTGTGGAAAAGAAATTCATGCCCATGCATTAAGGACTGGTGTAGCATTTGACGGTCATTTACCCAATGCACTTTTAGACTTGTACGTAAGGTGTGGAAGGATGGGACCTGCATGGAACCAGTTTAACTATAACAAAAAGGATGTTGCAGCTTGGAATATCCTATTAACTGGGTATGCACAGAGGGGTCAAGGAAAGCAAGCAGTTGAGCTATTTCACAGTATGGTTGAGTCCGGGTTAGATCCGGATGAGATCACATTTATTTCACTATTATGTGCTTGCAGTAGGTCTGGTATGGTTAGTGAAGGGTTGGAGTATTTCAGAAGCATGAAACTTGAATATTTTATTACACCTAATCTGAAGCACTATGCGTGTGTAGTTGATCTACTTGGTCGTGATGGTCAATTGGATAATGCGCACGAGTTTATACAGAAGATGCCTATAAATCCCGATCCAGCTATATGGGGAGCCTTGTTAAATGCATGCATGATCAACAAGAAGGTTGAACTTGGTGAGCTTGCAGCTGAGCAAATTTTTAAGATGGATACAGAAAGTGTTGGGTATTACGTACTTATGTGTAATCTCTATGCTGACAGTGGAAAATGGGAAGAAGTGGCACTAGTAAGAAAGATGATGAGGAAAAGGGGCCTAACTGTAGATCCTGGATGCAGTTGGGTGGAGGTAAAGGGAAAAGTTCATGCTTTCCTAAGTGGTGATAATTTGCATCCTCAATTTAAGGAAATAAATGCAGTTATGGACGGATTTTATGAGAAAATGAGATCTGCGGGTGTCAAAGAGCCCGAAACCCGTCCAACAGATGAATTTGAAGCTTCAAAAGCTGAGATCTTCTGTGGACACAGCGAAAGACTTGCAGTTGCATTTGGGCTCATTAACACAGCGCCTGGGATGCCTATATGGGTGACTAAGAACCTTTACATGTGCCAAAGCTGTCACAGTACTATCAAGTTTATCTCTAAGGTTGTGCGTCGGGAGATTTCTGTAAGGGATACAGAAAAGTTTCACCATTTTAAGGATGGCTCCTGCACTTGTGGGGATGAAGGTTACTGGAGAAACTCCGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009451 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

889

Amino Acids

100.24

Weight (kDa)

7.66

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 219	5.6e-09	PPR repeat family
PPR	PF01535	175 - 204	7.9e-07	PPR repeat
PPR_2	PF13041	274 - 320	6.3e-09	PPR repeat family
PPR	PF01535	276 - 305	1.5e-06	PPR repeat
PPR_2	PF13041	374 - 422	8.8e-10	PPR repeat family
PPR	PF01535	377 - 407	1.7e-06	PPR repeat
PPR_2	PF13041	574 - 622	5.9e-13	PPR repeat family
PPR	PF01535	578 - 607	4.2e-06	PPR repeat
E_motif	PF20431	694 - 754	2.5e-17	E motif
DYW_deaminase	PF14432	803 - 879	1.9e-29	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15510
fragaria_vesca	FvH4_6g30690
malus_domestica	MD17G1201500.v1.1
prunus_persica	Prupe.3G077400_v2.0.a1
pyrus_communis	pycom17g20540
rosa_chinensis	RchiOBHm_Chr2g0137061
rosa_laevigata	RLG00000019603
rosa_multiflora	Rmu_sc0001374.1_g000025
rosa_roxburghii	Rroxscaffold_2G00107710
rosa_rugosa	Rorug02G0337700
rosa_samantha	Rh2AG386800 Rh2BG393600 Rh2CG374100 Rh2DG409700
rosa_wichuraiana	Rw2G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1998
Acc36I	ACCTGC	1 cut(s)	1699
AccII	CGCG	2 cut(s)	387, 906
AccIII	TCCGGA	2 cut(s)	922, 1825
AciI	CCGC	8 cut(s)	47, 83, 253, 546, 560, 771, 1025, 2366
AclWI	GGATC	4 cut(s)	833, 1817, 2027, 2234
AcsI	RAATTY	7 cut(s)	406, 583, 1276, 1528, 1596, 2112, 2402
AcuI	CTGAAG	1 cut(s)	1961
AfaI	GTAC	7 cut(s)	392, 398, 784, 1325, 1667, 2151, 2539
AfiI	CCNNNNNNNGG	2 cut(s)	1473, 2611
AflIII	ACRYGT	2 cut(s)	700, 2517
AhlI	ACTAGT	1 cut(s)	2200
AjnI	CCWGG	2 cut(s)	2242, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw21I	GWGCWC	2 cut(s)	385, 778
AlwI	GGATC	4 cut(s)	833, 1817, 2027, 2234
AlwNI	CAGNNNCTG	1 cut(s)	2483
Aor13HI	TCCGGA	2 cut(s)	922, 1825
AoxI	GGCC	2 cut(s)	1456, 2227
ApeKI	GCWGC	3 cut(s)	198, 1730, 2102
ApoI	RAATTY	7 cut(s)	406, 583, 1276, 1528, 1596, 2112, 2402
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
Asp700I	GAANNNNTTC	1 cut(s)	2598
AspA2I	CCTAGG	1 cut(s)	812
AspLEI	GCGC	3 cut(s)	906, 1999, 2482
AspS9I	GGNCC	3 cut(s)	1464, 1688, 2227
AsuC2I	CCSGG	1 cut(s)	1816
AsuHPI	GGTGA	5 cut(s)	521, 2105, 2306, 2512, 2594
AvaII	GGWCC	2 cut(s)	1464, 1688
AvrII	CCTAGG	1 cut(s)	812
BanII	GRGCYC	3 cut(s)	385, 2382, 2469
BauI	CACGAG	3 cut(s)	829, 1150, 2000
BbsI	GAAGAC	2 cut(s)	25, 903
Bbv12I	GWGCWC	2 cut(s)	385, 778
BbvI	GCAGC	3 cut(s)	210, 1742, 2114
BccI	CCATC	7 cut(s)	137, 320, 1198, 1678, 1973, 2116, 2609
BcgI	CGANNNNNNTGC	4 cut(s)	828, 862, 2432, 2466
BciT130I	CCWGG	2 cut(s)	2244, 2484
BciVI	GTATCC	2 cut(s)	2119, 2581
BclI	TGATCA	2 cut(s)	750, 2070
BcnI	CCSGG	1 cut(s)	1816
BcuI	ACTAGT	1 cut(s)	2200
BfaI	CTAG	4 cut(s)	813, 942, 1107, 2201
BfmI	CTRYAG	5 cut(s)	169, 196, 1195, 1239, 2235
BfoI	RGCGCY	1 cut(s)	2483
BfuAI	ACCTGC	1 cut(s)	1699
BfuI	GTATCC	2 cut(s)	2119, 2581
BglII	AGATCT	2 cut(s)	2360, 2424
BisI	GCNGC	4 cut(s)	199, 253, 1731, 2103
BlnI	CCTAGG	1 cut(s)	812
BlpI	GCTNAGC	2 cut(s)	449, 2106
BlsI	GCNGC	4 cut(s)	200, 254, 1732, 2104
BmcAI	AGTACT	1 cut(s)	2539
Bme1390I	CCNGG	3 cut(s)	1816, 2244, 2484
Bme18I	GGWCC	2 cut(s)	1464, 1688
BmgT120I	GGNCC	3 cut(s)	1464, 1688, 2227
BmiI	GGNNCC	6 cut(s)	263, 1689, 1700, 2050, 2228, 2620
BmrFI	CCNGG	3 cut(s)	1816, 2244, 2484
BmrI	ACTGGG	2 cut(s)	1329, 1761
BmuI	ACTGGG	2 cut(s)	1329, 1761
BpiI	GAAGAC	2 cut(s)	25, 903
Bpu1102I	GCTNAGC	2 cut(s)	449, 2106
BpuMI	CCSGG	1 cut(s)	1816
BsaAI	YACGTR	2 cut(s)	1669, 2149
BsaJI	CCNNGG	7 cut(s)	256, 812, 997, 1408, 1453, 1539, 2483
BsaWI	WCCGGW	3 cut(s)	922, 1314, 1825
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	1473, 2611
Bse1I	ACTGG	5 cut(s)	1324, 1624, 1702, 1756, 2651
Bse3DI	GCAATG	2 cut(s)	443, 846
BseAI	TCCGGA	2 cut(s)	922, 1825
BseBI	CCWGG	2 cut(s)	2244, 2484
BseDI	CCNNGG	7 cut(s)	256, 812, 997, 1408, 1453, 1539, 2483
BseLI	CCNNNNNNNGG	2 cut(s)	1473, 2611
BseMI	GCAATG	2 cut(s)	443, 846
BseMII	CTCAG	5 cut(s)	21, 440, 1528, 2097, 2412
BseNI	ACTGG	5 cut(s)	1324, 1624, 1702, 1756, 2651
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	210, 1742, 2114
BseYI	CCCAGC	1 cut(s)	1418
BsgI	GTGCAG	2 cut(s)	771, 2608
Bsh1236I	CGCG	2 cut(s)	387, 906
BshFI	GGCC	2 cut(s)	1458, 2229
BsiHKAI	GWGCWC	2 cut(s)	385, 778
BsiSI	CCGG	4 cut(s)	923, 1315, 1815, 1826
BslFI	GGGAC	2 cut(s)	833, 1701
BslI	CCNNNNNNNGG	2 cut(s)	1473, 2611
BsmFI	GGGAC	2 cut(s)	833, 1701
BsnI	GGCC	2 cut(s)	1458, 2229
Bsp1286I	GDGCHC	4 cut(s)	385, 778, 2382, 2469
Bsp13I	TCCGGA	2 cut(s)	922, 1825
Bsp1720I	GCTNAGC	2 cut(s)	449, 2106
Bsp19I	CCATGG	3 cut(s)	256, 997, 1408
BspACI	CCGC	8 cut(s)	47, 83, 253, 546, 560, 771, 1025, 2366
BspANI	GGCC	2 cut(s)	1458, 2229
BspCNI	CTCAG	5 cut(s)	22, 441, 1527, 2098, 2413
BspEI	TCCGGA	2 cut(s)	922, 1825
BspFNI	CGCG	2 cut(s)	387, 906
BspHI	TCATGA	2 cut(s)	897, 1300
BspLI	GGNNCC	6 cut(s)	263, 1689, 1700, 2050, 2228, 2620
BspMAI	CTGCAG	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	1699
BspPI	GGATC	4 cut(s)	833, 1817, 2027, 2234
BsrDI	GCAATG	2 cut(s)	443, 846
BsrI	ACTGG	5 cut(s)	1324, 1624, 1702, 1756, 2651
BssECI	CCNNGG	7 cut(s)	256, 812, 997, 1408, 1453, 1539, 2483
BssSI	CACGAG	3 cut(s)	829, 1150, 2000
BssT1I	CCWWGG	6 cut(s)	256, 812, 997, 1408, 1453, 1539
Bst2BI	CACGAG	3 cut(s)	829, 1150, 2000
Bst2UI	CCWGG	2 cut(s)	2244, 2484
Bst4CI	ACNGT	6 cut(s)	193, 1637, 1802, 2177, 2236, 2537
BstBAI	YACGTR	2 cut(s)	1669, 2149
BstC8I	GCNNGC	7 cut(s)	385, 665, 1308, 1782, 1861, 2065, 2100
BstDSI	CCRYGG	3 cut(s)	256, 997, 1408
BstFNI	CGCG	2 cut(s)	387, 906
BstH2I	RGCGCY	1 cut(s)	2483
BstHHI	GCGC	3 cut(s)	906, 1999, 2482
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 1303, 1419, 2417, 2488
BstNI	CCWGG	2 cut(s)	2244, 2484
BstNSI	RCATGY	5 cut(s)	457, 704, 1269, 2067, 2521
BstSCI	CCNGG	3 cut(s)	1814, 2242, 2482
BstSFI	CTRYAG	5 cut(s)	169, 196, 1195, 1239, 2235
BstSNI	TACGTA	2 cut(s)	1669, 2149
BstUI	CGCG	2 cut(s)	387, 906
BstV1I	GCAGC	3 cut(s)	210, 1742, 2114
BstV2I	GAAGAC	2 cut(s)	25, 903
BstX2I	RGATCY	5 cut(s)	825, 1822, 2239, 2360, 2424
BstXI	CCANNNNNNTGG	1 cut(s)	2043
BstYI	RGATCY	5 cut(s)	825, 1822, 2239, 2360, 2424
BsuI	GTATCC	2 cut(s)	2119, 2581
BsuRI	GGCC	2 cut(s)	1458, 2229
BtgI	CCRYGG	3 cut(s)	256, 997, 1408
BtsI	GCAGTG	1 cut(s)	1169
BtsIMutI	CAGTG	2 cut(s)	1169, 2182
BveI	ACCTGC	1 cut(s)	1699
Cac8I	GCNNGC	7 cut(s)	385, 665, 1308, 1782, 1861, 2065, 2100
CaiI	CAGNNNCTG	1 cut(s)	2483
CciI	TCATGA	2 cut(s)	897, 1300
CfoI	GCGC	3 cut(s)	906, 1999, 2482
Cfr13I	GGNCC	3 cut(s)	1464, 1688, 2227
CseI	GACGC	2 cut(s)	1372, 2555
Csp6I	GTAC	7 cut(s)	391, 397, 783, 1324, 1666, 2150, 2538
CviQI	GTAC	7 cut(s)	391, 397, 783, 1324, 1666, 2150, 2538
Ecl136II	GAGCTC	1 cut(s)	383
Eco105I	TACGTA	2 cut(s)	1669, 2149
Eco130I	CCWWGG	6 cut(s)	256, 812, 997, 1408, 1453, 1539
Eco24I	GRGCYC	3 cut(s)	385, 2382, 2469
Eco47I	GGWCC	2 cut(s)	1464, 1688
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	1961
EcoICRI	GAGCTC	1 cut(s)	383
EcoO109I	RGGNCCY	2 cut(s)	1688, 2227
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	2242, 2482
EcoT14I	CCWWGG	6 cut(s)	256, 812, 997, 1408, 1453, 1539
EcoT22I	ATGCAT	4 cut(s)	445, 1612, 2065, 2069
EcoT38I	GRGCYC	3 cut(s)	385, 2382, 2469
ErhI	CCWWGG	6 cut(s)	256, 812, 997, 1408, 1453, 1539
FaqI	GGGAC	2 cut(s)	833, 1701
FauI	CCCGC	3 cut(s)	539, 553, 2359
FauNDI	CATATG	1 cut(s)	1333
FbaI	TGATCA	2 cut(s)	750, 2070
Fnu4HI	GCNGC	4 cut(s)	199, 253, 1731, 2103
FriOI	GRGCYC	3 cut(s)	385, 2382, 2469
Fsp4HI	GCNGC	4 cut(s)	199, 253, 1731, 2103
FspAI	RTGCGCAY	1 cut(s)	1998
FspBI	CTAG	4 cut(s)	813, 942, 1107, 2201
FspI	TGCGCA	1 cut(s)	1998
GlaI	GCGC	3 cut(s)	905, 1998, 2481
GluI	GCNGC	4 cut(s)	199, 253, 1731, 2103
GsaI	CCCAGC	1 cut(s)	1422
HaeII	RGCGCY	1 cut(s)	2483
HaeIII	GGCC	2 cut(s)	1458, 2229
HapII	CCGG	4 cut(s)	923, 1315, 1815, 1826
HgaI	GACGC	2 cut(s)	1372, 2555
HhaI	GCGC	3 cut(s)	906, 1999, 2482
Hin6I	GCGC	3 cut(s)	904, 1997, 2480
HinP1I	GCGC	3 cut(s)	904, 1997, 2480
HindIII	AAGCTT	4 cut(s)	245, 273, 1295, 2409
HinfI	GANTC	8 cut(s)	290, 691, 706, 711, 722, 908, 1218, 1811
HpaII	CCGG	4 cut(s)	923, 1315, 1815, 1826
HphI	GGTGA	5 cut(s)	521, 2105, 2306, 2512, 2594
Hpy166II	GTNNAC	2 cut(s)	391, 2435
Hpy188I	TCNGA	8 cut(s)	31, 235, 727, 1059, 1464, 1904, 1941, 2659
Hpy188III	TCNNGA	9 cut(s)	849, 898, 923, 1107, 1301, 1826, 1976, 2030, 2570
Hpy8I	GTNNAC	2 cut(s)	391, 2435
Hpy99I	CGWCG	3 cut(s)	415, 1388, 2571
HpyAV	CCTTC	8 cut(s)	371, 678, 872, 1469, 1674, 1880, 2074, 2633
HpyCH4III	ACNGT	6 cut(s)	193, 1637, 1802, 2177, 2236, 2537
HpyCH4IV	ACGT	3 cut(s)	333, 1668, 2148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 1303, 1419, 2417, 2488
HpySE526I	ACGT	3 cut(s)	333, 1668, 2148
HspAI	GCGC	3 cut(s)	904, 1997, 2480
Kpn2I	TCCGGA	2 cut(s)	922, 1825
Ksp22I	TGATCA	2 cut(s)	750, 2070
LmnI	GCTCC	6 cut(s)	153, 380, 1207, 1574, 2048, 2624
Lsp1109I	GCAGC	3 cut(s)	210, 1742, 2114
MaeI	CTAG	4 cut(s)	813, 942, 1107, 2201
MaeII	ACGT	3 cut(s)	333, 1668, 2148
MaeIII	GTNAC	6 cut(s)	329, 1001, 1534, 2500, 2531, 2642
MboII	GAAGA	8 cut(s)	30, 80, 335, 513, 903, 2026, 2201, 2419
MfeI	CAATTG	1 cut(s)	1985
MflI	RGATCY	5 cut(s)	825, 1822, 2239, 2360, 2424
MhlI	GDGCHC	4 cut(s)	385, 778, 2382, 2469
MlyI	GAGTC	3 cut(s)	731, 917, 1820
MmeI	TCCRAC	2 cut(s)	1872, 2417
Mph1103I	ATGCAT	4 cut(s)	445, 1612, 2065, 2069
MroI	TCCGGA	2 cut(s)	922, 1825
MroXI	GAANNNNTTC	1 cut(s)	2598
MslI	CAYNNNNRTG	5 cut(s)	458, 699, 1361, 1605, 1852
MspA1I	CMGCKG	1 cut(s)	2105
MspI	CCGG	4 cut(s)	923, 1315, 1815, 1826
MspR9I	CCNGG	3 cut(s)	1816, 2244, 2484
MunI	CAATTG	1 cut(s)	1985
MvaI	CCWGG	2 cut(s)	2244, 2484
MvnI	CGCG	2 cut(s)	387, 906
MwoI	GCNNNNNNNGC	5 cut(s)	53, 1303, 1419, 2417, 2488
NciI	CCSGG	1 cut(s)	1816
NcoI	CCATGG	3 cut(s)	256, 997, 1408
NdeI	CATATG	1 cut(s)	1333
NlaIV	GGNNCC	6 cut(s)	263, 1689, 1700, 2050, 2228, 2620
NmuCI	GTSAC	2 cut(s)	2500, 2531
NsbI	TGCGCA	1 cut(s)	1998
NsiI	ATGCAT	4 cut(s)	445, 1612, 2065, 2069
NspI	RCATGY	5 cut(s)	457, 704, 1269, 2067, 2521
PaeI	GCATGC	1 cut(s)	2067
PagI	TCATGA	2 cut(s)	897, 1300
PciI	ACATGT	2 cut(s)	700, 2517
PcsI	WCGNNNNNNNCGW	2 cut(s)	401, 410
PdmI	GAANNNNTTC	1 cut(s)	2598
PfeI	GAWTC	5 cut(s)	290, 691, 706, 711, 1218
PfoI	TCCNGGA	1 cut(s)	2242
PkrI	GCNGC	4 cut(s)	200, 254, 1732, 2104
PleI	GAGTC	3 cut(s)	730, 916, 1819
PpsI	GAGTC	3 cut(s)	730, 916, 1819
Ppu21I	YACGTR	2 cut(s)	1669, 2149
PpuMI	RGGWCCY	1 cut(s)	1688
PscI	ACATGT	2 cut(s)	700, 2517
Psp124BI	GAGCTC	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	1688
Psp6I	CCWGG	2 cut(s)	2242, 2482
PspFI	CCCAGC	1 cut(s)	1418
PspGI	CCWGG	2 cut(s)	2242, 2482
PspN4I	GGNNCC	6 cut(s)	263, 1689, 1700, 2050, 2228, 2620
PspPI	GGNCC	3 cut(s)	1464, 1688, 2227
PspPPI	RGGWCCY	1 cut(s)	1688
PstI	CTGCAG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	2483
PsuI	RGATCY	5 cut(s)	825, 1822, 2239, 2360, 2424
PvuII	CAGCTG	1 cut(s)	2105
RsaI	GTAC	7 cut(s)	392, 398, 784, 1325, 1667, 2151, 2539
RsaNI	GTAC	7 cut(s)	391, 397, 783, 1324, 1666, 2150, 2538
RseI	CAYNNNNRTG	5 cut(s)	458, 699, 1361, 1605, 1852
SacI	GAGCTC	1 cut(s)	385
SatI	GCNGC	4 cut(s)	199, 253, 1731, 2103
Sau96I	GGNCC	3 cut(s)	1464, 1688, 2227
ScaI	AGTACT	1 cut(s)	2539
SchI	GAGTC	3 cut(s)	731, 917, 1820
ScrFI	CCNGG	3 cut(s)	1816, 2244, 2484
SduI	GDGCHC	4 cut(s)	385, 778, 2382, 2469
SfcI	CTRYAG	5 cut(s)	169, 196, 1195, 1239, 2235
SinI	GGWCC	2 cut(s)	1464, 1688
SmiMI	CAYNNNNRTG	5 cut(s)	458, 699, 1361, 1605, 1852
SnaBI	TACGTA	2 cut(s)	1669, 2149
SpeI	ACTAGT	1 cut(s)	2200
SphI	GCATGC	1 cut(s)	2067
SsiI	CCGC	8 cut(s)	47, 83, 253, 546, 560, 771, 1025, 2366
SspI	AATATT	1 cut(s)	1922
SspMI	CTAG	4 cut(s)	813, 942, 1107, 2201
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	3 cut(s)	1814, 2242, 2482
StyI	CCWWGG	6 cut(s)	256, 812, 997, 1408, 1453, 1539
TaaI	ACNGT	6 cut(s)	193, 1637, 1802, 2177, 2236, 2537
TaiI	ACGT	3 cut(s)	336, 1671, 2151
TaqI	TCGA	7 cut(s)	123, 293, 404, 410, 570, 709, 1386
TatI	WGTACW	2 cut(s)	390, 2537
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	5 cut(s)	290, 691, 706, 711, 1218
TscAI	CASTG	2 cut(s)	1176, 2182
TseFI	GTSAC	2 cut(s)	2500, 2531
TseI	GCWGC	3 cut(s)	198, 1730, 2102
Tsp45I	GTSAC	2 cut(s)	2500, 2531
TspGWI	ACGGA	4 cut(s)	805, 1031, 1100, 2355
TspRI	CASTG	2 cut(s)	1176, 2182
VpaK11BI	GGWCC	2 cut(s)	1464, 1688
XapI	RAATTY	7 cut(s)	406, 583, 1276, 1528, 1596, 2112, 2402
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	5 cut(s)	457, 704, 1269, 2067, 2521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2612
XmaJI	CCTAGG	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	2598
XspI	CTAG	4 cut(s)	813, 942, 1107, 2201
ZrmI	AGTACT	1 cut(s)	2539
Zsp2I	ATGCAT	4 cut(s)	445, 1612, 2065, 2069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.